Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400038656 Solanum tuberosum HOM05D001907 ORTHO05D015557 3.4e-115 418.3 208 100.0
PGSC0003DMG402028118 Solanum tuberosum HOM05D001907 ORTHO05D015557 3.7e-53 212.2 291 46.4
CAN.G128.123 Capsicum annuum HOM05D001907 ORTHO05D015557 2.1e-48 196.4 280 45.0
CAN.G128.119 Capsicum annuum HOM05D001907 ORTHO05D015557 1.8e-47 193.4 280 44.6
CAN.G128.124 Capsicum annuum HOM05D001907 ORTHO05D015557 1.8e-47 193.4 280 44.6
CAN.G3720.1 Capsicum annuum HOM05D010354 ORTHO05D015557 1.9e-33 146.7 111 67.6
Nitab4.5_0003217g0050 Nicotiana tabacum HOM05D008744 ORTHO05D015557 1.2e-22 110.9 87 63.2
Nitab4.5_0000613g0220 Nicotiana tabacum HOM05D010354 ORTHO05D012840 2.7e-19 99.8 120 49.2
CAN.G128.121 Capsicum annuum HOM05D001907 ORTHO05D015557 2.8e-16 89.7 81 60.5
PGSC0003DMG400031007 Solanum tuberosum HOM05D001907 ORTHO05D002387 2.4e-15 86.7 121 43.8
Solyc03g007170.3 Solanum lycopersicum HOM05D001907 ORTHO05D002387 1.5e-14 84.0 118 43.2
Sopen03g003150 Solanum pennellii HOM05D001907 ORTHO05D002387 1.5e-14 84.0 118 43.2
Nitab4.5_0007960g0020 Nicotiana tabacum HOM05D001907 ORTHO05D002387 2.0e-14 83.6 99 42.4
Peaxi162Scf01372g00036 Petunia axillaris HOM05D001907 ORTHO05D002387 4.5e-14 82.4 102 42.2
Nitab4.5_0000072g0450 Nicotiana tabacum HOM05D001907 ORTHO05D002387 9.9e-14 81.3 101 41.6
SalBow4G3260 Salvia bowleyana HOM05D001907 ORTHO05D002387 5.4e-12 75.5 99 39.4
HanXRQChr15g0486171 Helianthus annuus HOM05D001907 ORTHO05D002387 7.1e-12 75.1 98 40.8
Dinv22983 Davidia involucrata HOM05D001907 ORTHO05D002387 9.3e-12 74.7 76 47.4
vmacro06769 Vaccinium macrocarpon HOM05D001907 ORTHO05D002387 9.3e-12 74.7 76 48.7
Lj1A984T84 Lonicera japonica HOM05D001907 ORTHO05D002387 1.2e-11 74.3 76 44.7
Glyma.11G014400 Glycine max HOM05D001907 ORTHO05D002387 1.6e-11 73.9 93 40.9
AUR62016106 Chenopodium quinoa HOM05D001907 ORTHO05D002387 2.1e-11 73.6 114 37.7
LjContig00222g0001670 Lotus japonicus HOM05D001907 ORTHO05D002387 2.1e-11 73.6 76 43.4
Lalb_Chr16g0376731 Lupinus albus HOM05D001907 ORTHO05D002387 2.1e-11 73.6 101 39.6
CiPaw.04G062600 Carya illinoinensis HOM05D001907 ORTHO05D002387 2.7e-11 73.2 77 45.5
SGA_v2.0_scaffold2G01140 Striga asiatica HOM05D001907 ORTHO05D002387 2.7e-11 73.2 72 44.4
CSS0034181 Camellia sinensis var. sinensis HOM05D001907 ORTHO05D002387 3.5e-11 72.8 76 47.4
GSVIVG01018518001 Vitis vinifera HOM05D001907 ORTHO05D002387 3.5e-11 72.8 133 33.8
Cc02_g03910 Coffea canephora HOM05D001907 ORTHO05D002387 4.6e-11 72.4 83 45.8
Eucgr.B01534 Eucalyptus grandis HOM05D001907 ORTHO05D002387 4.6e-11 72.4 76 43.4
Glyma.01G231400 Glycine max HOM05D001907 ORTHO05D002387 4.6e-11 72.4 93 39.8
Phvul.002G035700 Phaseolus vulgaris HOM05D001907 ORTHO05D002387 4.6e-11 72.4 99 39.4
Hund04635 Selenicereus undatus HOM05D001907 ORTHO05D002387 4.6e-11 72.4 75 45.3
AUR62035052 Chenopodium quinoa HOM05D001907 ORTHO05D002387 6.0e-11 72.0 115 36.5
Ciclev10004843m.g Citrus clementina HOM05D001907 ORTHO05D002387 6.0e-11 72.0 76 44.7
Prupe.2G281800 Prunus persica HOM05D001907 ORTHO05D002387 6.0e-11 72.0 76 48.7
Haze_13829 Corylus avellana HOM05D001907 ORTHO05D002387 7.9e-11 71.6 76 44.7
ECA232G1417 Erigeron canadensis HOM05D001907 ORTHO05D002387 7.9e-11 71.6 119 34.5
VMungo1215G3103 Vigna mungo HOM05D001907 ORTHO05D002387 7.9e-11 71.6 93 39.8
Aqoxy7G00628 Aquilegia oxysepala HOM05D001907 ORTHO05D002387 1.0e-10 71.2 82 41.5
arahy.Tifrunner.gnm1.ann1.7B1RJZ Arachis hypogaea HOM05D001907 ORTHO05D002387 1.0e-10 71.2 98 41.8
arahy.Tifrunner.gnm1.ann1.SH3RHJ Arachis hypogaea HOM05D001907 ORTHO05D002387 1.0e-10 71.2 98 41.8
DCAR_020207 Daucus carota HOM05D001907 ORTHO05D002387 1.0e-10 71.2 76 44.7
Nn4g26408 Nelumbo nucifera HOM05D001907 ORTHO05D002387 1.0e-10 71.2 76 46.1
Sabra15G0144200 Salix brachista HOM05D001907 ORTHO05D002387 1.0e-10 71.2 88 40.9
CAN.G14735.1 Capsicum annuum HOM05D001907 ORTHO05D015557 1.3e-10 70.9 59 64.4
PGR031G0197 Punica granatum HOM05D001907 ORTHO05D002387 1.3e-10 70.9 77 40.3
MSTRG.8803 Avicennia marina HOM05D001907 ORTHO05D002387 1.8e-10 70.5 96 40.6
Atru.chr1.639 Acer truncatum HOM05D001907 ORTHO05D002387 2.3e-10 70.1 74 44.6
Zm00001eb423420 Zea mays HOM05D001907 ORTHO05D002387 2.3e-10 70.1 81 43.2
Manes.14G033300 Manihot esculenta HOM05D001907 ORTHO05D002387 3.0e-10 69.7 76 43.4
QL12p039655 Quercus lobata HOM05D001907 ORTHO05D002387 3.0e-10 69.7 76 43.4
THA.LOC104808290 Tarenaya hassleriana HOM05D001907 ORTHO05D002387 3.0e-10 69.7 106 35.8
TWI14G1320 Tripterygium wilfordii HOM05D001907 ORTHO05D002387 3.0e-10 69.7 102 35.3
MELO3C006832.2 Cucumis melo HOM05D001907 ORTHO05D002387 3.9e-10 69.3 76 47.4
CsaV3_3G016330 Cucumis sativus L. HOM05D001907 ORTHO05D002387 3.9e-10 69.3 76 47.4
Oeu022503.1 Olea europaea HOM05D001907 ORTHO05D002387 3.9e-10 69.3 72 45.8
PSO478G3736 Papaver somniferum HOM05D001907 ORTHO05D002387 3.9e-10 69.3 83 42.2
PSO782G3057 Papaver somniferum HOM05D001907 ORTHO05D002387 3.9e-10 69.3 83 43.4
Prupe.2G145400 Prunus persica HOM05D001907 ORTHO05D002387 3.9e-10 69.3 106 35.8
Thecc.03G161100 Theobroma cacao HOM05D001907 ORTHO05D002387 3.9e-10 69.3 75 44.0
Duzib205G0190 Durio zibethinus HOM05D001907 ORTHO05D002387 5.1e-10 68.9 75 41.3
MBI12_g10759_MAGBIO Magnolia biondii HOM05D001907 ORTHO05D002387 6.7e-10 68.6 85 38.8
MD01G1185400 Malus domestica HOM05D001907 ORTHO05D002387 6.7e-10 68.6 76 47.4
Medtr4g032680 Medicago truncatula HOM05D001907 ORTHO05D002387 6.7e-10 68.6 75 44.0
Aa31sc16G70 Aethionema arabicum HOM05D001907 ORTHO05D002387 8.7e-10 68.2 97 36.1
CAN.G29762.1 Capsicum annuum HOM05D001907 ORTHO05D015557 8.7e-10 68.2 59 62.7
ClCG05G007470 Citrullus lanatus HOM05D000898 ORTHO05D000762 8.7e-10 68.2 76 44.7
Thhalv10025104m.g Eutrema salsugineum HOM05D001907 ORTHO05D002387 8.7e-10 68.2 76 40.8
AL7G27790 Arabidopsis lyrata HOM05D001907 ORTHO05D002387 1.1e-09 67.8 79 40.5
Potri.015G130900 Populus trichocarpa HOM05D001907 ORTHO05D002387 1.1e-09 67.8 76 42.1
CDE12G0750 Ceratophyllum demersum HOM05D001907 ORTHO05D002387 1.5e-09 67.4 98 37.8
Ca_24477_v3 Cicer arietinum L. HOM05D001907 ORTHO05D002387 1.5e-09 67.4 76 42.1
Medtr5g008680 Medicago truncatula HOM05D001907 ORTHO05D002387 1.5e-09 67.4 76 42.1
Gohir.A09G044100 Gossypium hirsutum HOM05D001907 ORTHO05D002387 1.9e-09 67.0 75 40.0
Gohir.D09G045400 Gossypium hirsutum HOM05D001907 ORTHO05D002387 1.9e-09 67.0 75 40.0
Phvul.011G000800 Phaseolus vulgaris HOM05D001907 ORTHO05D002387 1.9e-09 67.0 75 41.3
AT4G25340 Arabidopsis thaliana HOM05D001907 ORTHO05D002387 2.5e-09 66.6 76 39.5
Carub.0007s1567 Capsella rubella HOM05D001907 ORTHO05D002387 2.5e-09 66.6 76 43.4
Glyma.20G055800 Glycine max HOM05D001907 ORTHO05D002387 2.5e-09 66.6 75 40.0
Gorai.006G065000 Gossypium raimondii HOM05D001907 ORTHO05D002387 2.5e-09 66.6 117 34.2
HanXRQChr16g0512681 Helianthus annuus HOM05D001907 ORTHO05D002387 2.5e-09 66.6 73 42.5
Oeu042583.1 Olea europaea HOM05D001907 ORTHO05D002387 2.5e-09 66.6 206 29.1
Sp7g23360 Schrenkiella parvula HOM05D001907 ORTHO05D002387 2.5e-09 66.6 99 36.4
CAN.G1720.3 Capsicum annuum HOM05D000154 ORTHO05D015557 3.3e-09 66.2 37 78.4
A01p16640 Brassica napus HOM05D001907 ORTHO05D002387 4.3e-09 65.9 79 39.2
Psat7g226200 Pisum sativum HOM05D001907 ORTHO05D002387 4.3e-09 65.9 75 42.7
BraA01t01618Z Brassica rapa HOM05D001907 ORTHO05D002387 5.6e-09 65.5 79 38.0
Ca_19708_v3 Cicer arietinum L. HOM05D001907 ORTHO05D002387 5.6e-09 65.5 78 39.7
Sc25g0000140 Simmondsia chinensis HOM05D001907 ORTHO05D002387 5.6e-09 65.5 81 38.3
BcaC09g50789 Brassica carinata HOM05D001907 ORTHO05D002387 7.4e-09 65.1 79 38.0
CSS0047059 Camellia sinensis var. sinensis HOM05D001907 ORTHO05D002387 7.4e-09 65.1 76 43.4
CARHR232750 Cardamine hirsuta HOM05D001907 ORTHO05D002387 7.4e-09 65.1 99 38.4
Lsat_1_v5_gn_9_52620 Lactuca sativa HOM05D001907 ORTHO05D002387 7.4e-09 65.1 105 35.2
Rhsim03G0171200 Rhododendron simsii HOM05D001907 ORTHO05D002387 7.4e-09 65.1 110 36.4
TAR636G0269 Trochodendron aralioides HOM05D001907 ORTHO05D002387 7.4e-09 65.1 75 45.3
ATR0810G174 Amborella trichopoda HOM05D001907 ORTHO05D002387 1.3e-08 64.3 84 39.3
Psat2g186640 Pisum sativum HOM05D001907 ORTHO05D002387 1.3e-08 64.3 96 35.4
Mapoly0084s0048 Marchantia polymorpha HOM05D001907 ORTHO05D002387 1.6e-08 63.9 72 40.3
TPR.G38002 Trifolium pratense HOM05D001907 ORTHO05D002387 2.1e-08 63.5 118 32.2
VMungo0540G2205 Vigna mungo HOM05D001907 ORTHO05D002387 2.1e-08 63.5 204 27.9
CANSAT56G0923 Cannabis sativa HOM05D001907 ORTHO05D002387 2.8e-08 63.2 96 34.4
THA.LOC104800062 Tarenaya hassleriana HOM05D001907 ORTHO05D002387 3.7e-08 62.8 196 26.5
GSVIVG01038075001 Vitis vinifera HOM05D001907 ORTHO05D002387 4.8e-08 62.4 74 40.5
COL.COLO4_14177 Corchorus olitorius HOM05D001907 ORTHO05D002387 6.2e-08 62.0 52 48.1
QL08p052511 Quercus lobata HOM05D001907 ORTHO05D002387 8.1e-08 61.6 111 32.4
C01p20860 Brassica napus HOM05D001907 ORTHO05D002387 1.1e-07 61.2 80 37.5
MD00G1063900 Malus domestica HOM05D001907 ORTHO05D002387 1.1e-07 61.2 76 38.2
PGSC0003DMG400012775 Solanum tuberosum HOM05D001907 ORTHO05D002387 1.4e-07 60.8 75 40.0
Aa31LG3G6550 Aethionema arabicum HOM05D001907 ORTHO05D002387 2.4e-07 60.1 102 33.3
CAN.G388.15 Capsicum annuum HOM05D001907 ORTHO05D002387 2.4e-07 60.1 76 35.5
QL01p040141 Quercus lobata HOM05D001907 ORTHO05D002387 2.4e-07 60.1 109 33.0
Solyc01g091340.3 Solanum lycopersicum HOM05D001907 ORTHO05D002387 3.1e-07 59.7 75 38.7
Sopen01g037080 Solanum pennellii HOM05D001907 ORTHO05D002387 3.1e-07 59.7 75 38.7
AT3G12340 Arabidopsis thaliana HOM05D001907 ORTHO05D002387 5.3e-07 58.9 93 35.5
Dinv32376 Davidia involucrata HOM05D001907 ORTHO05D002387 5.3e-07 58.9 76 35.5
Lj2g0001614 Lotus japonicus HOM05D001907 ORTHO05D002387 5.3e-07 58.9 75 37.3
Peaxi162Scf00021g01721 Petunia axillaris HOM05D001907 ORTHO05D002387 5.3e-07 58.9 76 38.2
TPR.G34167 Trifolium pratense HOM05D001907 ORTHO05D002387 5.3e-07 58.9 75 41.3
Nitab4.5_0005372g0030 Nicotiana tabacum HOM05D001907 ORTHO05D002387 9.0e-07 58.2 76 35.5
Dinv43711 Davidia involucrata HOM05D001907 ORTHO05D002387 1.2e-06 57.8 76 35.5
Pp3c7_15020 Physcomitrium patens HOM05D001907 ORTHO05D002387 1.2e-06 57.8 71 38.0
Cc00_g02900 Coffea canephora HOM05D001907 ORTHO05D002387 1.5e-06 57.4 116 29.3
Nitab4.5_0000457g0300 Nicotiana tabacum HOM05D001907 ORTHO05D002387 1.5e-06 57.4 76 35.5
Cre14.g616100 Chlamydomonas reinhardtii HOM05D001907 ORTHO05D002387 2.6e-06 56.6 92 30.4
TWI77G0638 Tripterygium wilfordii HOM05D001907 ORTHO05D002387 2.6e-06 56.6 76 39.5
MD07G1257600 Malus domestica HOM05D001907 ORTHO05D002387 3.4e-06 56.2 114 33.3
SalBow5G0762 Salvia bowleyana HOM05D001907 ORTHO05D002387 3.4e-06 56.2 75 40.0
SalBow5G3617 Salvia bowleyana HOM05D001907 ORTHO05D002387 3.4e-06 56.2 75 40.0
Atru.chr9.36 Acer truncatum HOM05D001907 ORTHO05D002387 4.5e-06 55.8 75 37.3
AL3G23980 Arabidopsis lyrata HOM05D001907 ORTHO05D002387 4.5e-06 55.8 92 34.8
Carub.0003s1169 Capsella rubella HOM05D001907 ORTHO05D002387 4.5e-06 55.8 92 34.8
Thhalv10027735m.g Eutrema salsugineum HOM05D001907 ORTHO05D002387 4.5e-06 55.8 64 43.8
MBI03_g16542_MAGBIO Magnolia biondii HOM05D001907 ORTHO05D002387 4.5e-06 55.8 76 39.5
EL10Ac3g05795 Beta vulgaris HOM05D001907 ORTHO05D002387 7.6e-06 55.1 96 33.3
AUR62017717 Chenopodium quinoa HOM05D001907 ORTHO05D002387 7.6e-06 55.1 70 38.6
Migut.F00433 Erythranthe guttata HOM05D001907 ORTHO05D002387 7.6e-06 55.1 67 46.3
AT5G05420 Arabidopsis thaliana HOM05D001907 ORTHO05D002387 9.9e-06 54.7 72 34.7
Ciclev10019343m.g Citrus clementina HOM05D001907 ORTHO05D002387 9.9e-06 54.7 75 34.7
Solyc03g097080.4 Solanum lycopersicum HOM05D008744 ORTHO05D010647 9.9e-06 54.7 77 32.5
Sopen03g027820 Solanum pennellii HOM05D008744 ORTHO05D010647 9.9e-06 54.7 77 32.5


User provided reference genes

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