Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 3.4e-74 281.6 143 100.0
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 1.6e-63 246.1 128 96.9
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 3.6e-63 245.0 128 96.9
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 5.4e-43 177.9 137 67.9
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.2e-42 176.8 130 71.5
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.6e-42 176.4 130 70.8
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 5.9e-42 174.5 134 68.7
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 7.7e-42 174.1 121 74.4
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 7.7e-42 174.1 134 68.7
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 1.3e-41 173.3 134 66.4
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 2.8e-39 165.6 125 71.2
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 3.2e-27 125.6 122 56.6
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 1.9e-24 116.3 136 49.3
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 9.5e-24 114.0 117 52.1
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 1.2e-23 113.6 118 52.5
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 1.6e-23 113.2 121 52.1
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 3.6e-23 112.1 128 46.9
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 8.0e-23 110.9 129 51.9
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 8.0e-23 110.9 129 51.9
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 1.1e-22 110.5 130 49.2
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 1.1e-22 110.5 138 44.2
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 2.3e-22 109.4 129 48.8
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 2.3e-22 109.4 126 47.6
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 2.3e-22 109.4 134 45.5
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 5.2e-22 108.2 123 50.4
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 6.8e-22 107.8 143 42.0
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 6.8e-22 107.8 130 46.9
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 6.8e-22 107.8 125 52.0
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 1.5e-21 106.7 138 46.4
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 2.6e-21 105.9 122 54.1
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 2.6e-21 105.9 127 51.2
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 3.4e-21 105.5 130 46.2
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 5.8e-21 104.8 110 54.5
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 7.5e-21 104.4 129 49.6
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 7.5e-21 104.4 134 44.8
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 7.5e-21 104.4 139 46.8
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 9.8e-21 104.0 127 42.5
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.3e-20 103.6 129 45.7
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.7e-20 103.2 129 45.7
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 1.7e-20 103.2 138 45.7
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 2.2e-20 102.8 129 45.0
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 2.2e-20 102.8 137 46.7
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 3.7e-20 102.1 114 48.2
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 3.7e-20 102.1 140 44.3
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.7e-20 102.1 140 44.3
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 3.7e-20 102.1 121 53.7
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 3.7e-20 102.1 141 44.7
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 6.4e-20 101.3 141 42.6
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 6.4e-20 101.3 137 44.5
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 6.4e-20 101.3 128 43.0
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 8.3e-20 100.9 140 45.7
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 8.3e-20 100.9 140 44.3
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 8.3e-20 100.9 117 47.9
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 1.1e-19 100.5 112 50.9
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 1.1e-19 100.5 125 49.6
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 1.4e-19 100.1 124 46.8
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 1.4e-19 100.1 83 57.8
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 1.4e-19 100.1 110 48.2
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 1.9e-19 99.8 113 48.7
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 2.4e-19 99.4 130 46.9
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 2.4e-19 99.4 136 41.2
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.2e-19 99.0 140 43.6
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 4.1e-19 98.6 126 42.1
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 4.1e-19 98.6 129 45.7
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 4.1e-19 98.6 131 45.0
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 5.4e-19 98.2 131 44.3
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 5.4e-19 98.2 131 44.3
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 9.2e-19 97.4 109 47.7
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 1.2e-18 97.1 132 47.0
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 1.2e-18 97.1 135 42.2
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 1.2e-18 97.1 133 45.1
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 1.6e-18 96.7 145 39.3
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 1.6e-18 96.7 139 43.9
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 2.1e-18 96.3 127 42.5
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 2.1e-18 96.3 125 47.2
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 2.7e-18 95.9 130 46.9
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 2.7e-18 95.9 136 39.7
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 2.7e-18 95.9 124 42.7
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 2.7e-18 95.9 142 42.3
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.5e-18 95.5 144 43.1
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 4.6e-18 95.1 115 44.3
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 4.6e-18 95.1 115 44.3
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 6.0e-18 94.7 131 43.5
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 7.8e-18 94.4 130 46.2
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 7.8e-18 94.4 130 46.2
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 7.8e-18 94.4 121 41.3
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 1.0e-17 94.0 149 39.6
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 1.3e-17 93.6 137 44.5
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 1.3e-17 93.6 118 49.2
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 2.3e-17 92.8 109 45.0
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 3.9e-17 92.0 136 44.9
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 3.9e-17 92.0 140 40.7
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 3.9e-17 92.0 130 42.3
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 5.0e-17 91.7 139 38.1
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 5.0e-17 91.7 122 39.3
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 6.6e-17 91.3 113 45.1
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 6.6e-17 91.3 133 42.9
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 8.6e-17 90.9 113 44.2
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 8.6e-17 90.9 133 42.1
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 8.6e-17 90.9 121 39.7
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 1.1e-16 90.5 133 42.1
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 1.1e-16 90.5 133 42.1
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 1.1e-16 90.5 113 46.0
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.1e-16 90.5 131 42.7
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.5e-16 90.1 113 45.1
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 1.9e-16 89.7 128 42.2
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 1.9e-16 89.7 126 40.5
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 1.9e-16 89.7 126 41.3
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.5e-16 89.4 113 45.1
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 3.3e-16 89.0 133 42.1
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 3.3e-16 89.0 127 40.9
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 5.6e-16 88.2 132 43.9
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 5.6e-16 88.2 132 43.9
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 5.6e-16 88.2 132 43.9
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 1.2e-15 87.0 128 43.0
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 2.1e-15 86.3 113 43.4
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 2.1e-15 86.3 130 41.5
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 2.8e-15 85.9 132 41.7
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 2.8e-15 85.9 132 41.7
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 2.8e-15 85.9 74 58.1
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 4.7e-15 85.1 113 43.4
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 4.7e-15 85.1 115 38.3
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 1.1e-14 84.0 129 44.2
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 1.1e-14 84.0 117 42.7
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 1.8e-14 83.2 132 40.2
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 5.2e-14 81.6 98 44.9
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 5.2e-14 81.6 117 41.9
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 5.2e-14 81.6 117 41.9
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 4.4e-13 78.6 136 36.0
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 6.4e-12 74.7 115 34.8
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 9.2e-11 70.9 52 69.2
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 6.0e-10 68.2 105 38.1
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 7.8e-10 67.8 62 53.2
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.0e-09 67.4 91 45.1
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 1.3e-09 67.0 129 39.5
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 7.3e-08 61.2 109 34.9
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 1.2e-07 60.5 67 46.3
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 4.7e-07 58.5 118 33.1
Zm00001eb418860 Zea mays HOM05D005336 ORTHO05D006511 6.2e-07 58.2 134 30.6
Os04g0105200 Oryza sativa ssp. japonica HOM05D005336 ORTHO05D006511 8.1e-07 57.8 120 33.3
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 8.1e-07 57.8 140 33.6
Zm00001eb089560 Zea mays HOM05D005336 ORTHO05D006511 1.4e-06 57.0 135 30.4
SEGI_10606 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 5.2e-06 55.1 111 37.8
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 6.8e-06 54.7 75 45.3
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 6.8e-06 54.7 85 42.4
Lj8P558T23 Lonicera japonica HOM05D012621 ORTHO05D004349 6.8e-06 54.7 82 37.8
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 6.8e-06 54.7 79 43.0
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 8.9e-06 54.3 75 45.3
Lj8P558T18 Lonicera japonica HOM05D012621 ORTHO05D004349 8.9e-06 54.3 83 39.8


User provided reference genes

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