Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 1.4e-30 136.3 64 100.0
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 3.4e-29 131.7 64 95.3
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 3.4e-29 131.7 64 95.3
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 9.9e-29 130.2 64 96.9
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 2.2e-28 129.0 64 95.3
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 3.2e-19 98.6 64 67.2
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 3.2e-19 98.6 64 67.2
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 1.2e-18 96.7 61 68.9
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 2.7e-18 95.5 63 68.3
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 4.6e-18 94.7 63 66.7
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 1.3e-17 93.2 64 65.6
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 1.7e-17 92.8 63 63.5
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 2.3e-17 92.4 66 66.7
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 3.0e-17 92.0 61 60.7
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 1.1e-16 90.1 63 61.9
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 1.5e-16 89.7 60 65.0
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 1.9e-16 89.4 61 63.9
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 1.9e-16 89.4 61 62.3
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 1.9e-16 89.4 64 64.1
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 2.5e-16 89.0 63 57.1
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 4.3e-16 88.2 61 59.0
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 9.6e-16 87.0 63 60.3
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 9.6e-16 87.0 65 56.9
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 2.8e-15 85.5 63 60.3
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 6.2e-15 84.3 61 62.3
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 6.2e-15 84.3 61 62.3
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 6.2e-15 84.3 61 62.3
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 6.2e-15 84.3 61 63.9
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 8.1e-15 84.0 65 63.1
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.1e-14 83.6 63 61.9
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 1.1e-14 83.6 61 60.7
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.4e-14 83.2 61 60.7
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 3.1e-14 82.0 61 60.7
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 5.2e-14 81.3 60 55.0
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 5.2e-14 81.3 63 58.7
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 1.5e-13 79.7 63 58.7
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 1.5e-13 79.7 64 56.2
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 2.0e-13 79.3 63 55.6
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 2.6e-13 79.0 65 55.4
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 3.4e-13 78.6 60 58.3
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 1.7e-12 76.3 61 54.1
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 2.2e-12 75.9 61 52.5
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 3.8e-12 75.1 67 58.2
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 6.4e-12 74.3 63 50.8
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 6.4e-12 74.3 63 61.9
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 1.4e-11 73.2 65 50.8
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 1.4e-11 73.2 50 60.0
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 2.4e-11 72.4 64 50.0
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 2.4e-11 72.4 62 54.8
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 3.2e-11 72.0 60 48.3
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 3.2e-11 72.0 63 54.0
Peaxi162Scf00078g00515 Petunia axillaris HOM05D004137 ORTHO05D004804 5.4e-11 71.2 39 82.1
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 1.2e-10 70.1 63 57.1
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 1.2e-10 70.1 64 50.0
Lalb_Chr13g0295561 Lupinus albus HOM05D004137 ORTHO05D004804 1.2e-10 70.1 56 55.4
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 2.1e-10 69.3 63 46.0
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 2.7e-10 68.9 67 52.2
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 3.5e-10 68.6 61 49.2
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 3.5e-10 68.6 65 46.2
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 3.5e-10 68.6 65 46.2
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 4.6e-10 68.2 61 47.5
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 6.0e-10 67.8 64 43.8
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 6.0e-10 67.8 64 43.8
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 6.0e-10 67.8 64 43.8
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 6.0e-10 67.8 64 43.8
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 6.0e-10 67.8 64 43.8
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 6.0e-10 67.8 63 47.6
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.3e-09 66.6 62 56.5
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 1.7e-09 66.2 63 55.6
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 3.0e-09 65.5 62 41.9
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 3.0e-09 65.5 62 48.4
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 3.9e-09 65.1 63 54.0
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 3.9e-09 65.1 62 41.9
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 3.9e-09 65.1 61 49.2
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 5.1e-09 64.7 63 55.6
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 6.6e-09 64.3 66 40.9
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 8.7e-09 63.9 62 41.9
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 8.7e-09 63.9 63 52.4
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 8.7e-09 63.9 63 39.7
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 8.7e-09 63.9 65 46.2
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 1.1e-08 63.5 60 46.7
Lalb_Chr07g0185901 Lupinus albus HOM05D004137 ORTHO05D004804 1.1e-08 63.5 59 45.8
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 1.9e-08 62.8 63 52.4
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 1.9e-08 62.8 63 52.4
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 1.9e-08 62.8 63 50.8
Phvul.002G247400 Phaseolus vulgaris HOM05D004137 ORTHO05D004804 1.9e-08 62.8 60 46.7
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 2.5e-08 62.4 63 52.4
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 2.5e-08 62.4 63 54.0
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 2.5e-08 62.4 63 52.4
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 2.5e-08 62.4 63 52.4
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 3.3e-08 62.0 64 42.2
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 3.3e-08 62.0 64 43.8
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 3.3e-08 62.0 64 42.2
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 3.3e-08 62.0 66 50.0
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 3.3e-08 62.0 66 50.0
BcaNung02428 Brassica carinata HOM05D004137 ORTHO05D004804 4.3e-08 61.6 63 54.0
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 4.3e-08 61.6 63 50.8
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 4.3e-08 61.6 63 41.3
VMungo1383G2992 Vigna mungo HOM05D001291 ORTHO05D004804 4.3e-08 61.6 60 46.7
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 5.6e-08 61.2 64 42.2
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 5.6e-08 61.2 67 44.8
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 7.3e-08 60.8 63 46.0
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 7.3e-08 60.8 66 50.0
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 7.3e-08 60.8 63 50.8
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 7.3e-08 60.8 64 40.6
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 7.3e-08 60.8 66 50.0
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 7.3e-08 60.8 64 40.6
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 9.6e-08 60.5 63 39.7
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 9.6e-08 60.5 63 39.7
Glyma.08G125200 Glycine max HOM05D004137 ORTHO05D004804 9.6e-08 60.5 60 48.3
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 1.3e-07 60.1 63 50.8
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 1.3e-07 60.1 63 50.8
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 1.3e-07 60.1 63 50.8
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 1.6e-07 59.7 63 49.2
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 1.6e-07 59.7 64 40.6
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 2.1e-07 59.3 62 40.3
C03p15600 Brassica napus HOM05D004137 ORTHO05D004804 2.8e-07 58.9 61 47.5
BolC3t13997H Brassica oleracea HOM05D004137 ORTHO05D004804 2.8e-07 58.9 61 47.5
ClCG02G024390 Citrullus lanatus HOM05D004137 ORTHO05D004804 3.6e-07 58.5 60 48.3
A03p56610 Brassica napus HOM05D004137 ORTHO05D004804 4.8e-07 58.2 63 49.2
Potri.013G057766 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.1e-06 57.0 63 39.7
PGSC0003DMG400023737 Solanum tuberosum HOM05D004137 ORTHO05D004804 3.1e-06 55.5 65 43.1
A01p17580 Brassica napus HOM05D004137 ORTHO05D004804 4.0e-06 55.1 63 49.2
CARHR270170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 5.3e-06 54.7 63 46.0
Gohir.A12G175500 Gossypium hirsutum HOM05D004137 ORTHO05D004804 5.3e-06 54.7 63 38.1
Cc06_g23020 Coffea canephora HOM05D004137 ORTHO05D004804 9.0e-06 53.9 64 37.5


User provided reference genes

Program Settings