Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400037185 Solanum tuberosum HOM05D008706 ORTHO05D010440 3.0e-237 824.7 392 100.0
PGSC0003DMG400037851 Solanum tuberosum HOM05D008706 ORTHO05D010440 9.7e-212 740.0 396 91.4
PGSC0003DMG400024780 Solanum tuberosum HOM05D008706 ORTHO05D010440 1.6e-105 387.1 394 55.3
Sopen01g043690 Solanum pennellii HOM05D008706 ORTHO05D010440 2.5e-103 379.8 399 54.6
Sopen01g043720 Solanum pennellii HOM05D008706 ORTHO05D010440 2.5e-103 379.8 399 54.6
Nitab4.5_0001201g0040 Nicotiana tabacum HOM05D008706 ORTHO05D010440 1.2e-100 370.9 418 51.9
Peaxi162Scf00347g00087 Petunia axillaris HOM05D008706 ORTHO05D010440 1.0e-99 367.9 407 52.6
Nitab4.5_0002715g0090 Nicotiana tabacum HOM05D008706 ORTHO05D010440 1.9e-90 337.0 392 50.5
Nitab4.5_0008157g0050 Nicotiana tabacum HOM05D008706 ORTHO05D010440 3.2e-82 309.7 410 47.8
Nitab4.5_0001201g0090 Nicotiana tabacum HOM05D008706 ORTHO05D010440 5.2e-80 302.4 412 45.6
Peaxi162Scf00073g00111 Petunia axillaris HOM05D008706 ORTHO05D010440 5.5e-74 282.3 372 48.1
PGSC0003DMG400009944 Solanum tuberosum HOM05D008706 ORTHO05D010440 5.5e-74 282.3 393 45.0
PGSC0003DMG400008068 Solanum tuberosum HOM05D008706 ORTHO05D010440 9.4e-74 281.6 395 46.8
PGSC0003DMG400009874 Solanum tuberosum HOM05D008706 ORTHO05D010440 3.0e-72 276.6 391 43.2
Nitab4.5_0002715g0100 Nicotiana tabacum HOM05D008706 ORTHO05D010440 5.2e-72 275.8 321 49.8
Peaxi162Scf01164g00027 Petunia axillaris HOM05D008706 ORTHO05D010440 1.2e-71 274.6 387 41.6
Sopen12g023140 Solanum pennellii HOM05D008706 ORTHO05D010440 2.0e-71 273.9 394 44.4
Sopen12g023130 Solanum pennellii HOM05D008706 ORTHO05D010440 4.4e-71 272.7 394 44.7
Solyc12g044775.1 Solanum lycopersicum HOM05D008706 ORTHO05D010440 2.2e-70 270.4 389 44.0
PGSC0003DMG400008116 Solanum tuberosum HOM05D008706 ORTHO05D010440 2.9e-67 260.0 388 43.0
Solyc12g044790.1 Solanum lycopersicum HOM05D008706 ORTHO05D010440 3.8e-67 259.6 394 42.6
CAN.G546.3 Capsicum annuum HOM05D008706 ORTHO05D010440 5.0e-67 259.2 419 40.1
CAN.G546.5 Capsicum annuum HOM05D008706 ORTHO05D010440 5.5e-66 255.8 336 46.1
Sopen12g023120 Solanum pennellii HOM05D008706 ORTHO05D010440 7.2e-66 255.4 375 44.0
Peaxi162Scf01164g10021 Petunia axillaris HOM05D008706 ORTHO05D010440 4.9e-62 242.7 386 42.0
Peaxi162Scf00136g00622 Petunia axillaris HOM05D008706 ORTHO05D010440 6.3e-62 242.3 304 48.7
Nitab4.5_0000368g0410 Nicotiana tabacum HOM05D008706 ORTHO05D010440 3.5e-60 236.5 326 43.6
Solyc11g069120.1 Solanum lycopersicum HOM05D008706 ORTHO05D010440 6.1e-57 225.7 311 46.9
PGSC0003DMG400022280 Solanum tuberosum HOM05D008706 ORTHO05D010440 8.9e-56 221.9 402 35.3
Solyc12g044780.2 Solanum lycopersicum HOM05D008706 ORTHO05D010440 3.7e-54 216.5 344 40.7
PGSC0003DMG400009945 Solanum tuberosum HOM05D008706 ORTHO05D010440 9.2e-53 211.8 346 41.0
Peaxi162Scf00105g00614 Petunia axillaris HOM05D008706 ORTHO05D010440 6.0e-44 182.6 220 46.4
CAN.G396.6 Capsicum annuum HOM05D008706 ORTHO05D010440 5.0e-43 179.5 264 40.5
Peaxi162Scf01026g00232 Petunia axillaris HOM05D008706 ORTHO05D010440 1.1e-42 178.3 285 41.1
CAN.G1476.3 Capsicum annuum HOM05D008706 ORTHO05D010440 2.1e-41 174.1 392 33.2
Nitab4.5_0003349g0020 Nicotiana tabacum HOM05D008706 ORTHO05D010440 4.3e-26 123.2 188 43.1
Nitab4.5_0006875g0050 Nicotiana tabacum HOM05D008706 ORTHO05D010440 7.3e-26 122.5 155 49.0
Sopen12g023150 Solanum pennellii HOM05D008706 ORTHO05D010440 7.8e-20 102.4 163 41.1
Duzib177G0763 Durio zibethinus HOM05D007779 ORTHO05D009863 2.1e-17 94.4 411 26.3
Thecc.05G277100 Theobroma cacao HOM05D007779 ORTHO05D009863 9.0e-16 89.0 332 28.3
COL.COLO4_15414 Corchorus olitorius HOM05D007779 ORTHO05D009863 1.2e-15 88.6 327 27.8
Peaxi162Scf00105g00613 Petunia axillaris HOM05D008706 ORTHO05D010440 1.3e-14 85.1 105 49.5
Aqoxy7G00772 Aquilegia oxysepala HOM05D008706 ORTHO05D010440 2.2e-14 84.3 256 29.3
COL.COLO4_30844 Corchorus olitorius HOM05D008040 ORTHO05D010075 6.4e-14 82.8 395 23.3
Sopen11g027850 Solanum pennellii HOM05D008706 ORTHO05D010440 8.4e-14 82.4 124 41.1
COL.COLO4_31564 Corchorus olitorius HOM05D008040 ORTHO05D010075 1.9e-13 81.3 397 24.2
COL.COLO4_10414 Corchorus olitorius HOM05D008040 ORTHO05D010075 2.4e-13 80.9 398 23.4
COL.COLO4_31566 Corchorus olitorius HOM05D008040 ORTHO05D010075 7.9e-12 75.9 314 25.2
PGSC0003DMG400039069 Solanum tuberosum HOM05D008706 ORTHO05D010440 1.0e-11 75.5 110 40.0
Sabra15G0014700 Salix brachista HOM05D001729 ORTHO05D001155 1.3e-11 75.1 392 24.5
Dinv23189 Davidia involucrata HOM05D000571 ORTHO05D000435 1.8e-11 74.7 388 26.0
COL.COLO4_31563 Corchorus olitorius HOM05D008040 ORTHO05D010075 3.0e-11 73.9 394 23.6
Lsat_1_v5_gn_0_16480 Lactuca sativa HOM05D008898 ORTHO05D001155 5.1e-11 73.2 273 26.0
Rhsim08G0219900 Rhododendron simsii HOM05D001729 ORTHO05D001155 8.7e-11 72.4 315 29.2
COL.COLO4_12486 Corchorus olitorius HOM05D008040 ORTHO05D010075 1.9e-10 71.2 387 21.4
Zm00001eb115740 Zea mays HOM05D009359 ORTHO05D000491 1.9e-10 71.2 394 22.6
Zm00001eb116720 Zea mays HOM05D009359 ORTHO05D000491 1.9e-10 71.2 392 23.2
Aa31LG1G21350 Aethionema arabicum HOM05D007779 ORTHO05D009863 3.3e-10 70.5 246 28.0
Sed0024421 Sechium edule HOM05D007779 ORTHO05D009863 3.3e-10 70.5 296 27.4
COL.COLO4_31567 Corchorus olitorius HOM05D008040 ORTHO05D010075 4.3e-10 70.1 395 22.3
Sed0018172 Sechium edule HOM05D007779 ORTHO05D009863 4.3e-10 70.1 238 27.3
AT5G03970 Arabidopsis thaliana HOM05D007779 ORTHO05D009863 5.6e-10 69.7 240 26.2
HanXRQChr17g0547181 Helianthus annuus HOM05D008898 ORTHO05D001155 5.6e-10 69.7 249 26.5
Zm00001eb116670 Zea mays HOM05D009359 ORTHO05D000491 7.4e-10 69.3 391 22.0
Oeu016027.1 Olea europaea HOM05D007779 ORTHO05D009863 1.3e-09 68.6 236 25.4
CsaV3_2G003840 Cucumis sativus L. HOM05D007779 ORTHO05D009863 2.8e-09 67.4 279 28.0
Migut.H02492 Erythranthe guttata HOM05D002420 ORTHO05D002422 2.8e-09 67.4 205 30.7
Gohir.A09G096401 Gossypium hirsutum HOM05D001729 ORTHO05D001155 4.8e-09 66.6 403 25.3
ClCG02G016930 Citrullus lanatus HOM05D007779 ORTHO05D009863 8.1e-09 65.9 279 27.6
MBI01_g31985_MAGBIO Magnolia biondii HOM05D000664 ORTHO05D000491 8.1e-09 65.9 367 24.5
Carub.0006s0291 Capsella rubella HOM05D007779 ORTHO05D009863 1.8e-08 64.7 310 24.8
Gorai.013G114100 Gossypium raimondii HOM05D000664 ORTHO05D000491 1.8e-08 64.7 404 22.8
AL6G13560 Arabidopsis lyrata HOM05D007779 ORTHO05D009863 2.4e-08 64.3 246 26.0
TWI77G0815 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 2.4e-08 64.3 384 23.2
Aqoxy6G00425 Aquilegia oxysepala HOM05D000664 ORTHO05D010440 3.1e-08 63.9 405 23.7
BcaC06g32099 Brassica carinata HOM05D007779 ORTHO05D009863 3.1e-08 63.9 241 26.6
CAN.G1110.53 Capsicum annuum HOM05D001729 ORTHO05D001155 3.1e-08 63.9 377 23.9
COL.COLO4_10419 Corchorus olitorius HOM05D026534 ORTHO05D010075 3.1e-08 63.9 338 23.4
Gohir.A12G196800 Gossypium hirsutum HOM05D000664 ORTHO05D000491 3.1e-08 63.9 321 23.4
Gohir.D09G096101 Gossypium hirsutum HOM05D001729 ORTHO05D001155 4.0e-08 63.5 406 25.4
MBI05_g44031_MAGBIO Magnolia biondii HOM05D016110 ORTHO05D000491 4.0e-08 63.5 320 25.3
QL93p0073_1187 Quercus lobata HOM05D002420 ORTHO05D002422 4.0e-08 63.5 362 22.7
CARHR205550 Cardamine hirsuta HOM05D000664 ORTHO05D000491 6.9e-08 62.8 286 25.2
Nitab4.5_0002715g0110 Nicotiana tabacum HOM05D000488 ORTHO05D010440 6.9e-08 62.8 87 46.0
Aqoxy7G01734 Aquilegia oxysepala HOM05D015194 ORTHO05D010440 9.0e-08 62.4 412 23.5
PSO017G4273 Papaver somniferum HOM05D000789 ORTHO05D001155 9.0e-08 62.4 388 23.7
Cc06_g22370 Coffea canephora HOM05D000664 ORTHO05D000491 2.6e-07 60.8 213 27.2
Potri.013G110300 Populus trichocarpa HOM05D008040 ORTHO05D010075 2.6e-07 60.8 388 22.9
TWI12G0410 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 2.6e-07 60.8 434 21.9
Gorai.006G112800 Gossypium raimondii HOM05D001729 ORTHO05D001155 3.4e-07 60.5 407 25.3
Duzib205G1254 Durio zibethinus HOM05D000664 ORTHO05D000491 5.8e-07 59.7 382 22.8
QL05p077107 Quercus lobata HOM05D002420 ORTHO05D002422 5.8e-07 59.7 364 22.3
AT5G07610 Arabidopsis thaliana HOM05D000664 ORTHO05D000491 7.6e-07 59.3 334 24.0
TAR371G0827 Trochodendron aralioides HOM05D002420 ORTHO05D002422 7.6e-07 59.3 302 24.8
Sed0008915 Sechium edule HOM05D021455 ORTHO05D010440 9.9e-07 58.9 164 31.1
Oeu028341.1 Olea europaea HOM05D000007 ORTHO05D000039 1.3e-06 58.5 260 25.8
CAN.G53.20 Capsicum annuum HOM05D002420 ORTHO05D002422 1.7e-06 58.2 184 31.0
Duzib177G0141 Durio zibethinus HOM05D000664 ORTHO05D000491 1.7e-06 58.2 283 25.4
Gohir.D12G199300 Gossypium hirsutum HOM05D000664 ORTHO05D000491 2.2e-06 57.8 297 24.6
Gorai.008G214500 Gossypium raimondii HOM05D000664 ORTHO05D000491 2.2e-06 57.8 297 24.6
Nitab4.5_0000434g0050 Nicotiana tabacum HOM05D002420 ORTHO05D002422 2.2e-06 57.8 248 28.2
Potri.013G109900 Populus trichocarpa HOM05D008040 ORTHO05D010075 2.2e-06 57.8 388 23.2
PGR044G2131 Punica granatum HOM05D000007 ORTHO05D000039 2.2e-06 57.8 315 23.2
QL11p009094 Quercus lobata HOM05D001729 ORTHO05D001155 2.2e-06 57.8 214 29.0
Sed0001582 Sechium edule HOM05D002420 ORTHO05D002422 2.2e-06 57.8 284 23.9
Nitab4.5_0003233g0040 Nicotiana tabacum HOM05D002420 ORTHO05D002422 2.9e-06 57.4 192 28.1
PSO724G0409 Papaver somniferum HOM05D000664 ORTHO05D000491 2.9e-06 57.4 136 33.1
SGA_v2.0_scaffold47G17662 Striga asiatica HOM05D002420 ORTHO05D002422 2.9e-06 57.4 257 28.4
CAN.G134.123 Capsicum annuum HOM05D002420 ORTHO05D002422 3.8e-06 57.0 193 28.0
CAN.G358.108 Capsicum annuum HOM05D002420 ORTHO05D002422 3.8e-06 57.0 192 32.3
Nitab4.5_0000136g0430 Nicotiana tabacum HOM05D002420 ORTHO05D002422 3.8e-06 57.0 190 27.4
PGSC0003DMG400015473 Solanum tuberosum HOM05D002420 ORTHO05D002422 3.8e-06 57.0 182 30.8
TWI12G0677 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 3.8e-06 57.0 419 21.5
AT3G26010 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 4.9e-06 56.6 295 23.4
Aqoxy2G01152 Aquilegia oxysepala HOM05D000664 ORTHO05D000491 6.4e-06 56.2 367 24.5
Ciclev10006596m.g Citrus clementina HOM05D008040 ORTHO05D010075 6.4e-06 56.2 207 30.4
HanXRQChr05g0144961 Helianthus annuus HOM05D000007 ORTHO05D012101 6.4e-06 56.2 305 22.3
QL06p006111 Quercus lobata HOM05D001729 ORTHO05D001155 6.4e-06 56.2 202 25.2
RcHm_v2.0_Chr4g0398061 Rosa chinensis HOM05D000664 ORTHO05D000491 6.4e-06 56.2 321 24.0
Solyc04g071270.1 Solanum lycopersicum HOM05D000664 ORTHO05D000491 6.4e-06 56.2 319 24.5
Sopen04g027220 Solanum pennellii HOM05D000173 ORTHO05D000316 6.4e-06 56.2 322 24.8
Nitab4.5_0001827g0080 Nicotiana tabacum HOM05D002420 ORTHO05D002422 8.4e-06 55.8 244 28.3
Oeu024879.1 Olea europaea HOM05D002420 ORTHO05D002422 8.4e-06 55.8 260 23.8


User provided reference genes

Program Settings