Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 2.5e-83 312.4 194 100.0
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 6.5e-76 287.7 189 87.8
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 9.1e-70 267.3 189 91.5
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 3.4e-64 248.8 198 85.4
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 9.1e-62 240.7 181 87.3
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 2.7e-58 229.2 195 81.0
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 4.3e-51 205.3 201 63.2
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 2.1e-50 203.0 201 63.2
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 8.0e-50 201.1 203 63.1
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 1.4e-49 200.3 194 63.9
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 1.4e-49 200.3 197 58.4
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 3.0e-49 199.1 190 73.7
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 3.0e-49 199.1 189 72.5
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 5.2e-49 198.4 190 63.2
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 1.5e-48 196.8 188 73.9
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 2.0e-48 196.4 180 73.3
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 3.4e-48 195.7 190 64.7
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 1.7e-47 193.4 190 66.8
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 3.7e-47 192.2 190 66.8
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 4.9e-47 191.8 197 67.0
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 6.4e-47 191.4 159 85.5
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 6.4e-47 191.4 196 68.9
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 8.3e-47 191.0 190 58.9
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 8.3e-47 191.0 191 57.1
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 8.3e-47 191.0 201 65.2
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 1.1e-46 190.7 201 64.2
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 1.1e-46 190.7 199 69.3
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 1.8e-46 189.9 191 61.8
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 1.8e-46 189.9 193 63.2
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 3.2e-46 189.1 189 72.0
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 3.2e-46 189.1 199 66.3
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 4.1e-46 188.7 191 61.8
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 5.4e-46 188.3 193 68.4
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 5.4e-46 188.3 192 63.5
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 7.0e-46 188.0 197 67.0
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 1.2e-45 187.2 190 61.1
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 2.7e-45 186.0 191 61.8
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 2.7e-45 186.0 195 61.5
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 3.5e-45 185.7 187 69.0
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 4.6e-45 185.3 193 66.8
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 4.6e-45 185.3 201 66.2
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 5.9e-45 184.9 194 60.8
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 7.8e-45 184.5 192 60.9
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.0e-44 184.1 191 68.1
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 1.3e-44 183.7 191 60.2
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 1.7e-44 183.3 191 69.1
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 2.3e-44 183.0 191 60.7
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 3.0e-44 182.6 195 60.5
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 3.0e-44 182.6 192 57.3
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 3.0e-44 182.6 193 66.8
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 3.0e-44 182.6 191 68.1
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 5.0e-44 181.8 190 64.7
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 5.0e-44 181.8 190 64.7
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 5.0e-44 181.8 200 66.5
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 6.6e-44 181.4 193 67.9
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 6.6e-44 181.4 195 62.6
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 6.6e-44 181.4 191 63.4
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 8.6e-44 181.0 193 68.9
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 1.9e-43 179.9 199 64.8
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 1.9e-43 179.9 194 59.3
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 2.5e-43 179.5 187 60.4
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 3.3e-43 179.1 196 56.1
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 5.6e-43 178.3 195 58.5
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 9.5e-43 177.6 196 60.2
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 1.6e-42 176.8 200 64.0
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.6e-42 176.8 195 58.5
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 3.6e-42 175.6 191 58.6
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 4.7e-42 175.3 194 62.9
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 4.7e-42 175.3 202 60.9
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 8.0e-42 174.5 197 55.8
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 8.0e-42 174.5 195 60.5
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 1.0e-41 174.1 189 65.1
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.4e-41 173.7 195 56.9
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.4e-41 173.7 195 56.9
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 1.8e-41 173.3 198 60.6
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 1.8e-41 173.3 198 60.6
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 1.8e-41 173.3 198 60.6
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 2.3e-41 172.9 200 65.0
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 2.3e-41 172.9 195 56.4
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 3.1e-41 172.6 192 57.8
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.2e-40 170.6 195 59.5
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.0e-40 169.9 195 55.9
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 2.6e-40 169.5 198 64.6
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 4.4e-40 168.7 189 65.6
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 4.4e-40 168.7 199 64.8
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 9.8e-40 167.5 190 61.6
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 1.3e-39 167.2 188 66.0
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 1.3e-39 167.2 188 66.0
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 1.3e-39 167.2 202 61.9
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 1.3e-39 167.2 187 67.9
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 2.9e-39 166.0 200 65.5
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 3.7e-39 165.6 190 65.8
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 3.7e-39 165.6 201 54.2
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 3.7e-39 165.6 191 59.7
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 3.7e-39 165.6 191 59.7
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 1.9e-38 163.3 188 61.7
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 1.9e-38 163.3 197 64.5
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 2.4e-38 162.9 198 55.1
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 5.4e-38 161.8 194 65.5
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 5.4e-38 161.8 194 64.9
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 1.2e-37 160.6 194 64.4
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 8.9e-33 144.4 187 47.1
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 7.5e-32 141.4 180 46.7
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 3.7e-31 139.0 82 84.1
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 3.2e-30 136.0 186 57.5
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 3.2e-30 136.0 182 46.2
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 4.1e-30 135.6 164 50.6
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 5.4e-30 135.2 184 52.2
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 1.6e-29 133.7 186 45.2
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 1.6e-29 133.7 132 65.2
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 2.7e-29 132.9 121 61.2
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 6.6e-28 128.3 151 57.6
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 8.6e-28 127.9 202 57.9
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 8.6e-28 127.9 178 46.6
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 3.3e-27 125.9 164 47.6
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 5.6e-27 125.2 115 57.4
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 2.1e-26 123.2 134 59.7
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 6.2e-26 121.7 164 47.0
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 4.4e-24 115.5 116 55.2
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 8.4e-23 111.3 123 52.0
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 1.4e-22 110.5 155 53.5
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 2.4e-22 109.8 123 54.5
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 9.2e-22 107.8 123 52.0
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 2.1e-21 106.7 123 51.2
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 3.5e-21 105.9 182 54.4
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 8.6e-20 101.3 100 57.0
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 8.1e-18 94.7 104 72.1
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 9.9e-16 87.8 106 50.9
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 3.8e-15 85.9 125 44.0
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 7.1e-14 81.6 129 62.0
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 7.1e-14 81.6 109 55.0
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 2.1e-10 70.1 91 48.4
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 4.0e-09 65.9 68 54.4
CBR_g4589 Chara braunii HOM05D005729 ORTHO05D007026 3.4e-08 62.8 182 44.0


User provided reference genes

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