Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400035622 Solanum tuberosum HOM05D007382 ORTHO05D009012 2.1e-70 268.9 130 100.0
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 3.4e-36 155.2 122 63.1
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 7.5e-36 154.1 122 61.5
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 9.8e-36 153.7 112 66.1
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 1.7e-35 152.9 122 62.3
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 6.4e-35 151.0 114 62.3
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 4.1e-34 148.3 112 63.4
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 9.2e-34 147.1 124 60.5
Sopen09g026050 Solanum pennellii HOM05D007382 ORTHO05D009012 1.6e-30 136.3 129 55.8
Peaxi162Scf00472g00081 Petunia axillaris HOM05D007382 ORTHO05D009012 8.9e-29 130.6 113 54.9
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 1.5e-28 129.8 118 55.9
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 1.5e-28 129.8 118 55.9
PGSC0003DMG400037466 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.7e-27 126.3 129 49.6
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 7.8e-25 117.5 121 47.9
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 2.3e-24 115.9 119 48.7
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 6.6e-24 114.4 118 48.3
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 6.6e-24 114.4 128 44.5
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 1.5e-23 113.2 119 48.7
Sed0019756 Sechium edule HOM05D007382 ORTHO05D009012 3.3e-23 112.1 121 44.6
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 4.3e-23 111.7 106 47.2
QL07p045887 Quercus lobata HOM05D007382 ORTHO05D009012 4.3e-23 111.7 121 45.5
Nn2g10574 Nelumbo nucifera HOM05D007382 ORTHO05D009012 9.5e-23 110.5 121 44.6
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 1.2e-22 110.2 107 45.8
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 1.2e-22 110.2 107 45.8
HanXRQChr07g0195861 Helianthus annuus HOM05D007382 ORTHO05D009012 1.2e-22 110.2 121 43.0
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 1.2e-22 110.2 122 41.8
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 1.2e-22 110.2 122 41.8
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 1.2e-22 110.2 121 44.6
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 1.6e-22 109.8 105 49.5
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 2.8e-22 109.0 114 49.1
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 3.6e-22 108.6 106 47.2
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 3.6e-22 108.6 107 46.7
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 3.6e-22 108.6 122 45.9
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 4.7e-22 108.2 116 45.7
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 4.7e-22 108.2 106 45.3
Manes.09G071800 Manihot esculenta HOM05D007382 ORTHO05D009012 6.2e-22 107.8 130 43.8
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 1.1e-21 107.1 106 51.9
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 1.1e-21 107.1 122 40.2
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 1.8e-21 106.3 107 44.9
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 2.4e-21 105.9 108 49.1
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 3.1e-21 105.5 106 47.2
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 4.0e-21 105.1 111 45.0
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 4.0e-21 105.1 105 44.8
Migut.J00393 Erythranthe guttata HOM05D007382 ORTHO05D009012 4.0e-21 105.1 118 44.9
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 4.0e-21 105.1 125 44.0
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 1.2e-20 103.6 118 44.9
Haze_20685 Corylus avellana HOM05D007382 ORTHO05D009012 1.2e-20 103.6 105 48.6
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 1.2e-20 103.6 125 44.8
CiPaw.10G139200 Carya illinoinensis HOM05D007382 ORTHO05D009012 2.0e-20 102.8 106 48.1
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 2.0e-20 102.8 128 41.4
Sc01g0003740 Simmondsia chinensis HOM05D007382 ORTHO05D009012 2.0e-20 102.8 126 41.3
MELO3C003080.2 Cucumis melo HOM05D007382 ORTHO05D009012 3.4e-20 102.1 121 41.3
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 3.4e-20 102.1 105 49.5
Cfa017470 Carpinus fangiana HOM05D007382 ORTHO05D009012 4.4e-20 101.7 105 46.7
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 4.4e-20 101.7 105 50.5
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 4.4e-20 101.7 122 45.9
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 4.4e-20 101.7 105 50.5
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 7.6e-20 100.9 105 50.5
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 7.6e-20 100.9 105 50.5
Ah.08g212080 Amaranthus hybridus HOM05D007382 ORTHO05D009012 1.7e-19 99.8 135 37.8
CsaV3_4G024470 Cucumis sativus L. HOM05D007382 ORTHO05D009012 3.8e-19 98.6 121 40.5
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 3.8e-19 98.6 107 43.9
Sed0025265 Sechium edule HOM05D007382 ORTHO05D009012 4.9e-19 98.2 121 38.0
Glyma.03G175900 Glycine max HOM05D007382 ORTHO05D009012 6.4e-19 97.8 113 39.8
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 8.4e-19 97.4 106 43.4
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 1.1e-18 97.1 106 46.2
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 1.1e-18 97.1 112 44.6
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 1.4e-18 96.7 124 42.7
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 2.4e-18 95.9 113 43.4
Glyma.19G176400 Glycine max HOM05D007382 ORTHO05D009012 2.4e-18 95.9 114 41.2
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 2.4e-18 95.9 112 39.3
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 2.4e-18 95.9 121 40.5
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 3.2e-18 95.5 108 45.4
ClCG04G008690 Citrullus lanatus HOM05D007382 ORTHO05D009012 4.2e-18 95.1 122 36.9
Sp5g04630 Schrenkiella parvula HOM05D007382 ORTHO05D009012 5.4e-18 94.7 110 44.5
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 7.1e-18 94.4 105 45.7
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 7.1e-18 94.4 114 39.5
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 7.1e-18 94.4 114 39.5
ATR0709G053 Amborella trichopoda HOM05D007382 ORTHO05D009012 9.2e-18 94.0 119 41.2
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 9.2e-18 94.0 107 44.9
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 1.2e-17 93.6 115 39.1
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 1.6e-17 93.2 109 41.3
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 2.1e-17 92.8 106 42.5
VMungo1383G3160 Vigna mungo HOM05D007382 ORTHO05D009012 2.7e-17 92.4 106 42.5
Medtr7g100200 Medicago truncatula HOM05D007382 ORTHO05D009012 3.5e-17 92.0 123 38.2
Aqoxy5G00351 Aquilegia oxysepala HOM05D007382 ORTHO05D009012 6.0e-17 91.3 112 40.2
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 6.0e-17 91.3 106 42.5
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 7.8e-17 90.9 106 42.5
Hund10951 Selenicereus undatus HOM05D007382 ORTHO05D009012 7.8e-17 90.9 125 39.2
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 1.0e-16 90.5 106 43.4
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 1.7e-16 89.7 117 40.2
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 2.3e-16 89.4 148 32.4
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 3.9e-16 88.6 125 37.6
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 1.5e-15 86.7 101 42.6
unitig_744.g24666 Utricularia gibba HOM05D007382 ORTHO05D009012 1.9e-15 86.3 117 40.2
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 3.3e-15 85.5 101 42.6
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 9.6e-15 84.0 105 42.9
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 9.6e-15 84.0 105 42.9
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 1.8e-13 79.7 112 35.7
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 5.8e-12 74.7 121 38.0
TPR.G21464 Trifolium pratense HOM05D007382 ORTHO05D009012 9.9e-12 73.9 136 32.4
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 9.9e-12 73.9 70 44.3
CiPaw.15G123900 Carya illinoinensis HOM05D007382 ORTHO05D009012 2.2e-11 72.8 108 37.0
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 5.4e-10 68.2 111 36.0
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 9.3e-10 67.4 102 36.3
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 1.6e-09 66.6 77 40.3
CDE12G0689 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 2.5e-07 59.3 58 43.1
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 2.5e-07 59.3 72 40.3
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 5.6e-07 58.2 63 44.4
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 6.2e-06 54.7 66 43.9


User provided reference genes

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