Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400035405 Solanum tuberosum HOM05D008110 ORTHO05D000088 5.2e-151 537.7 279 100.0
PGSC0003DMG400044605 Solanum tuberosum HOM05D008110 ORTHO05D000088 5.8e-94 348.2 235 82.1
Sopen05g025010 Solanum pennellii HOM05D008110 ORTHO05D000088 6.1e-67 258.5 241 66.0
PGSC0003DMG400044725 Solanum tuberosum HOM05D008110 ORTHO05D000088 1.4e-66 257.3 283 51.2
PGSC0003DMG400010668 Solanum tuberosum HOM05D008110 ORTHO05D000088 1.1e-55 221.1 260 55.0
CAN.G241.1 Capsicum annuum HOM05D008110 ORTHO05D000088 1.2e-51 207.6 243 52.7
CAN.G504.44 Capsicum annuum HOM05D000185 ORTHO05D000105 1.6e-51 207.2 240 49.6
Solyc02g026080.2 Solanum lycopersicum HOM05D008110 ORTHO05D000088 3.6e-51 206.1 254 52.0
Sopen01g048640 Solanum pennellii HOM05D008110 ORTHO05D000088 3.6e-51 206.1 241 56.4
Sopen02g009350 Solanum pennellii HOM05D008110 ORTHO05D000088 3.6e-51 206.1 253 51.4
Sopen02g006830 Solanum pennellii HOM05D008110 ORTHO05D000088 6.1e-51 205.3 254 52.0
Solyc01g106250.4 Solanum lycopersicum HOM05D008110 ORTHO05D000088 8.0e-51 204.9 253 54.5
Solyc05g041100.3 Solanum lycopersicum HOM05D008110 ORTHO05D000088 1.3e-48 197.6 202 62.9
Peaxi162Scf00016g01351 Petunia axillaris HOM05D008110 ORTHO05D000088 2.0e-46 190.3 310 44.2
CAN.G555.3 Capsicum annuum HOM05D008110 ORTHO05D000088 2.5e-44 183.3 287 43.2
PGSC0003DMG400037529 Solanum tuberosum HOM05D008110 ORTHO05D000088 5.5e-44 182.2 252 51.2
Sopen01g051140 Solanum pennellii HOM05D008110 ORTHO05D000088 3.0e-42 176.4 250 49.2
CAN.G322.59 Capsicum annuum HOM05D008110 ORTHO05D000088 9.8e-41 171.4 265 44.5
Solyc01g108950.3 Solanum lycopersicum HOM05D008110 ORTHO05D000088 1.3e-40 171.0 253 45.5
Solyc01g108940.2 Solanum lycopersicum HOM05D008110 ORTHO05D000088 2.2e-40 170.2 250 48.4
CAN.G192.14 Capsicum annuum HOM05D008110 ORTHO05D000088 3.7e-40 169.5 295 42.7
Sopen01g051160 Solanum pennellii HOM05D008110 ORTHO05D000088 8.3e-40 168.3 253 44.7
Nitab4.5_0008194g0010 Nicotiana tabacum HOM05D008110 ORTHO05D000088 9.2e-39 164.9 275 43.6
Nitab4.5_0001401g0140 Nicotiana tabacum HOM05D008110 ORTHO05D000088 1.5e-36 157.5 276 42.4
Sopen06g015150 Solanum pennellii HOM05D008110 ORTHO05D000088 1.8e-34 150.6 256 44.1
PGSC0003DMG400036386 Solanum tuberosum HOM05D008110 ORTHO05D000088 1.3e-32 144.4 251 44.6
PGSC0003DMG400045703 Solanum tuberosum HOM05D008110 ORTHO05D000088 2.4e-31 140.2 243 39.5
CAN.G322.83 Capsicum annuum HOM05D008110 ORTHO05D000088 1.1e-26 124.8 91 63.7
Cc00_g00220 Coffea canephora HOM05D008110 ORTHO05D000088 1.4e-26 124.4 247 31.2
PGSC0003DMG401025831 Solanum tuberosum HOM05D008110 ORTHO05D000088 2.3e-26 123.6 138 50.0
Solyc01g109030.4 Solanum lycopersicum HOM05D008110 ORTHO05D000088 5.2e-26 122.5 100 61.0
CAN.G192.15 Capsicum annuum HOM05D008110 ORTHO05D000088 5.8e-25 119.0 176 44.3
Actinidia12967 Actinidia chinensis HOM05D008110 ORTHO05D000088 9.8e-25 118.2 240 30.4
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 9.8e-25 118.2 122 52.5
RhsimUnG0089900 Rhododendron simsii HOM05D008110 ORTHO05D000088 1.3e-24 117.9 242 28.9
PGSC0003DMG400025830 Solanum tuberosum HOM05D008110 ORTHO05D000088 6.4e-24 115.5 235 40.4
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 6.0e-22 109.0 246 32.5
DCAR_022075 Daucus carota HOM05D008110 ORTHO05D000088 2.3e-21 107.1 241 32.0
Migut.J01193 Erythranthe guttata HOM05D008110 ORTHO05D000088 7.3e-20 102.1 242 30.6
MSTRG.17812 Avicennia marina HOM05D008110 ORTHO05D000088 9.5e-20 101.7 280 29.6
Dinv42109 Davidia involucrata HOM05D008110 ORTHO05D000088 1.1e-18 98.2 240 32.5
Oeu003285.1 Olea europaea HOM05D008110 ORTHO05D000088 7.5e-17 92.0 301 28.2
Migut.N02603 Erythranthe guttata HOM05D008110 ORTHO05D000088 1.7e-16 90.9 355 25.6
Cc00_g00230 Coffea canephora HOM05D008110 ORTHO05D000088 2.1e-14 84.0 387 24.0
Cc11_g01500 Coffea canephora HOM05D008110 ORTHO05D000088 2.1e-14 84.0 202 28.7
Oeu025427.1 Olea europaea HOM05D044301 ORTHO05D000088 1.3e-13 81.3 227 28.2
Rhsim11G0170700 Rhododendron simsii HOM05D008110 ORTHO05D000088 3.9e-13 79.7 105 37.1
SalBow7G1050 Salvia bowleyana HOM05D008110 ORTHO05D000088 6.6e-13 79.0 81 43.2
Rhsim02G0167600 Rhododendron simsii HOM05D000395 ORTHO05D000088 1.5e-12 77.8 202 30.2
Hma1.2p1_1527F.1_g289060 Hydrangea macrophylla HOM05D008110 ORTHO05D000088 4.3e-12 76.3 66 45.5
SGA_v2.0_scaffold54G19507 Striga asiatica HOM05D008110 ORTHO05D000088 1.2e-11 74.7 245 25.3
CSS0024769 Camellia sinensis var. sinensis HOM05D008110 ORTHO05D000088 3.6e-11 73.2 66 45.5
Actinidia36524 Actinidia chinensis HOM05D001349 ORTHO05D001980 1.1e-10 71.6 261 22.2
CSS0000969 Camellia sinensis var. sinensis HOM05D000823 ORTHO05D000088 1.8e-10 70.9 268 23.1
CSS0025372 Camellia sinensis var. sinensis HOM05D000823 ORTHO05D000088 1.8e-10 70.9 268 23.1
Migut.N02605 Erythranthe guttata HOM05D008110 ORTHO05D000088 1.8e-10 70.9 64 51.6
TAR628G1487 Trochodendron aralioides HOM05D000823 ORTHO05D000088 1.8e-10 70.9 79 40.5
Eucgr.I01213 Eucalyptus grandis HOM05D008110 ORTHO05D000088 2.4e-10 70.5 238 23.5
SGA_v2.0_scaffold54G19506 Striga asiatica HOM05D008110 ORTHO05D000088 4.0e-10 69.7 256 23.8
GSVIVG01023108001 Vitis vinifera HOM05D007130 ORTHO05D002078 4.0e-10 69.7 56 53.6
QL11p039199 Quercus lobata HOM05D000823 ORTHO05D000088 6.8e-10 68.9 57 43.9
vmacro02160 Vaccinium macrocarpon HOM05D000823 ORTHO05D000088 8.9e-10 68.6 205 28.8
Ciclev10028843m.g Citrus clementina HOM05D000823 ORTHO05D000088 1.2e-09 68.2 242 27.3
TAR376G0714 Trochodendron aralioides HOM05D000823 ORTHO05D000088 1.2e-09 68.2 56 44.6
Sopen01g051190 Solanum pennellii HOM05D008110 ORTHO05D000088 2.6e-09 67.0 63 52.4
FAN27G1325 Fragaria x ananassa HOM05D000823 ORTHO05D000088 3.4e-09 66.6 53 45.3
Ah.01g019890 Amaranthus hybridus HOM05D001349 ORTHO05D001980 5.8e-09 65.9 83 38.6
FvH4_2g07300 Fragaria vesca HOM05D000823 ORTHO05D000088 5.8e-09 65.9 53 45.3
FAN24G0466 Fragaria x ananassa HOM05D000823 ORTHO05D000088 5.8e-09 65.9 53 45.3
Dinv26764 Davidia involucrata HOM05D000823 ORTHO05D000088 7.6e-09 65.5 56 42.9
Ciclev10026137m.g Citrus clementina HOM05D000823 ORTHO05D000088 9.9e-09 65.1 245 24.5
ECA232G4654 Erigeron canadensis HOM05D000823 ORTHO05D016096 1.3e-08 64.7 58 44.8
Rhsim10G0125600 Rhododendron simsii HOM05D000823 ORTHO05D000088 2.2e-08 63.9 85 36.5
Nn6g32136 Nelumbo nucifera HOM05D000823 ORTHO05D000088 2.9e-08 63.5 57 38.6
TWI31G0651 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 2.9e-08 63.5 57 45.6
Hund06201 Selenicereus undatus HOM05D000823 ORTHO05D000088 3.8e-08 63.2 240 22.9
Sopen01g051230 Solanum pennellii HOM05D008110 ORTHO05D000088 3.8e-08 63.2 54 57.4
Lsat_1_v5_gn_4_177680 Lactuca sativa HOM05D000823 ORTHO05D000088 4.9e-08 62.8 58 41.4
Sp6g02680 Schrenkiella parvula HOM05D006628 ORTHO05D000088 4.9e-08 62.8 75 36.0
CSS0005810 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 8.4e-08 62.0 57 38.6
ClCG01G016540 Citrullus lanatus HOM05D000395 ORTHO05D000088 8.4e-08 62.0 56 35.7
Duzib264G0448 Durio zibethinus HOM05D000823 ORTHO05D000088 8.4e-08 62.0 55 43.6
BolC9t54023H Brassica oleracea HOM05D000823 ORTHO05D000088 1.1e-07 61.6 59 45.8
FAN15G3419 Fragaria x ananassa HOM05D000823 ORTHO05D000088 1.1e-07 61.6 55 41.8
FAN20G0950 Fragaria x ananassa HOM05D000823 ORTHO05D000088 1.1e-07 61.6 55 41.8
FAN20G2013 Fragaria x ananassa HOM05D000823 ORTHO05D000088 1.1e-07 61.6 55 41.8
RcHm_v2.0_Chr6g0259811 Rosa chinensis HOM05D000823 ORTHO05D009132 1.1e-07 61.6 91 36.3
Thecc.02G027900 Theobroma cacao HOM05D008110 ORTHO05D000088 1.1e-07 61.6 248 29.4
Atru.chr5.2872 Acer truncatum HOM05D000823 ORTHO05D000088 1.4e-07 61.2 65 46.2
BcaB05g23662 Brassica carinata HOM05D006628 ORTHO05D000088 1.9e-07 60.8 56 41.1
QL10p039053 Quercus lobata HOM05D000395 ORTHO05D000088 1.9e-07 60.8 94 35.1
Rhsim09G0072000 Rhododendron simsii HOM05D000395 ORTHO05D000088 1.9e-07 60.8 56 39.3
EL10Ac9g21795 Beta vulgaris HOM05D000823 ORTHO05D000088 2.4e-07 60.5 54 42.6
Carub.0008s2085 Capsella rubella HOM05D009243 ORTHO05D011355 2.4e-07 60.5 227 24.2
Medtr4g068300 Medicago truncatula HOM05D000823 ORTHO05D000088 2.4e-07 60.5 72 37.5
SGA_v2.0_scaffold223G42874 Striga asiatica HOM05D008110 ORTHO05D000088 2.4e-07 60.5 70 37.1
COL.COLO4_32520 Corchorus olitorius HOM05D008110 ORTHO05D000088 3.2e-07 60.1 245 22.4
FAN23G2649 Fragaria x ananassa HOM05D000823 ORTHO05D000088 3.2e-07 60.1 55 41.8
Sp7g27330 Schrenkiella parvula HOM05D006628 ORTHO05D000088 3.2e-07 60.1 247 22.3
RcHm_v2.0_Chr1g0356381 Rosa chinensis HOM05D000823 ORTHO05D000088 5.4e-07 59.3 53 37.7
RcHm_v2.0_Chr1g0319011 Rosa chinensis HOM05D000823 ORTHO05D000088 7.1e-07 58.9 69 34.8
TAR625G0462 Trochodendron aralioides HOM05D000823 ORTHO05D000088 7.1e-07 58.9 245 22.0
FvH4_2g27400 Fragaria vesca HOM05D000823 ORTHO05D000088 9.2e-07 58.5 55 40.0
FAN03G1989 Fragaria x ananassa HOM05D000823 ORTHO05D000088 9.2e-07 58.5 53 37.7
RcHm_v2.0_Chr6g0259241 Rosa chinensis HOM05D000823 ORTHO05D000088 9.2e-07 58.5 53 41.5
vmacro04665 Vaccinium macrocarpon HOM05D000823 ORTHO05D000088 9.2e-07 58.5 64 39.1
CDE04G1885 Ceratophyllum demersum HOM05D000823 ORTHO05D000088 1.2e-06 58.2 86 29.1
Lj7C16T11 Lonicera japonica HOM05D000395 ORTHO05D000088 1.2e-06 58.2 111 27.9
Nn5g29404 Nelumbo nucifera HOM05D000823 ORTHO05D000088 1.2e-06 58.2 219 24.2
MELO3C007522.2 Cucumis melo HOM05D007907 ORTHO05D009079 1.6e-06 57.8 55 41.8
BcaC04g23179 Brassica carinata HOM05D000823 ORTHO05D000088 2.1e-06 57.4 253 22.9
CSS0012563 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 2.1e-06 57.4 122 29.5
Duzib248G0315 Durio zibethinus HOM05D008110 ORTHO05D000088 2.1e-06 57.4 267 27.0
Lj7A19G27 Lonicera japonica HOM05D000395 ORTHO05D000088 2.1e-06 57.4 111 27.9
MBI16_g26333_MAGBIO Magnolia biondii HOM05D000823 ORTHO05D000088 2.1e-06 57.4 58 37.9
Atru.chr13.594 Acer truncatum HOM05D000823 ORTHO05D000088 2.7e-06 57.0 128 25.8
Aqoxy6G00928 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 2.7e-06 57.0 77 33.8
CiPaw.16G051600 Carya illinoinensis HOM05D000823 ORTHO05D000088 2.7e-06 57.0 75 38.7
AUR62027222 Chenopodium quinoa HOM05D000823 ORTHO05D000088 2.7e-06 57.0 88 28.4
Medtr4g068310 Medicago truncatula HOM05D007600 ORTHO05D009132 2.7e-06 57.0 61 41.0
RhsimUnG0104100 Rhododendron simsii HOM05D000395 ORTHO05D000088 2.7e-06 57.0 94 31.9
Sabra02G0101800 Salix brachista HOM05D000823 ORTHO05D000088 2.7e-06 57.0 72 33.3
Sed0000312 Sechium edule HOM05D007907 ORTHO05D009079 2.7e-06 57.0 242 24.4
SEGI_17863 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 2.7e-06 57.0 55 40.0
EL10Ac9g21796 Beta vulgaris HOM05D000823 ORTHO05D000088 3.5e-06 56.6 245 22.0
BcaB04g20080 Brassica carinata HOM05D000823 ORTHO05D000088 3.5e-06 56.6 261 23.0
CiPaw.02G012800 Carya illinoinensis HOM05D000823 ORTHO05D000088 3.5e-06 56.6 55 38.2
Lj2A600T56 Lonicera japonica HOM05D000395 ORTHO05D000088 3.5e-06 56.6 56 41.1
Lj2C600T9 Lonicera japonica HOM05D000395 ORTHO05D000088 3.5e-06 56.6 56 42.9
RcHm_v2.0_Chr6g0296251 Rosa chinensis HOM05D000823 ORTHO05D000088 3.5e-06 56.6 55 40.0
TWI75G0037 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 3.5e-06 56.6 239 22.2
Aa31LG5G11590 Aethionema arabicum HOM05D006628 ORTHO05D000088 4.6e-06 56.2 53 35.8
BcaB04g20081 Brassica carinata HOM05D000823 ORTHO05D000088 4.6e-06 56.2 97 32.0
BcaNung06129 Brassica carinata HOM05D000765 ORTHO05D000613 4.6e-06 56.2 96 28.1
C09p11350 Brassica napus HOM05D000823 ORTHO05D000088 4.6e-06 56.2 254 24.0
Cc00_g07580 Coffea canephora HOM05D000823 ORTHO05D000088 4.6e-06 56.2 57 38.6
Eucgr.A01956 Eucalyptus grandis HOM05D008110 ORTHO05D000088 4.6e-06 56.2 54 42.6
Glyma.12G048700 Glycine max HOM05D000823 ORTHO05D000088 4.6e-06 56.2 52 42.3
Gohir.D02G093100 Gossypium hirsutum HOM05D000823 ORTHO05D000088 4.6e-06 56.2 56 35.7
Sed0022882 Sechium edule HOM05D000823 ORTHO05D000088 4.6e-06 56.2 99 26.3
Hund08735 Selenicereus undatus HOM05D000823 ORTHO05D000088 4.6e-06 56.2 95 33.7
Aa31LG7G14390 Aethionema arabicum HOM05D006628 ORTHO05D000088 6.0e-06 55.8 244 22.1
AL8G36730 Arabidopsis lyrata HOM05D009243 ORTHO05D011355 6.0e-06 55.8 251 26.3
C07p60560 Brassica napus HOM05D006628 ORTHO05D000088 6.0e-06 55.8 275 24.0
CANSAT80G0874 Cannabis sativa HOM05D000823 ORTHO05D000088 6.0e-06 55.8 93 32.3
Carub.0008s2753 Capsella rubella HOM05D000823 ORTHO05D000088 6.0e-06 55.8 255 23.5
Cpa.g.sc7.145 Carica papaya HOM05D000823 ORTHO05D000088 6.0e-06 55.8 46 50.0
FAN24G3249 Fragaria x ananassa HOM05D000823 ORTHO05D000088 6.0e-06 55.8 55 38.2
vmacro05287 Vaccinium macrocarpon HOM05D000823 ORTHO05D000088 6.0e-06 55.8 85 31.8
Dinv26759 Davidia involucrata HOM05D000823 ORTHO05D000088 7.8e-06 55.5 55 38.2
FvH4_2g40640 Fragaria vesca HOM05D000823 ORTHO05D000088 7.8e-06 55.5 57 35.1
FvH4_7g01780 Fragaria vesca HOM05D000823 ORTHO05D000088 7.8e-06 55.5 53 35.8
FAN06G1437 Fragaria x ananassa HOM05D000823 ORTHO05D000088 7.8e-06 55.5 53 35.8
Glyma.11G124200 Glycine max HOM05D000823 ORTHO05D000088 7.8e-06 55.5 72 34.7
Lj4C136T19 Lonicera japonica HOM05D000395 ORTHO05D000088 7.8e-06 55.5 104 30.8
Prupe.1G388200 Prunus persica HOM05D000823 ORTHO05D000088 7.8e-06 55.5 56 35.7
TAR381G0348 Trochodendron aralioides HOM05D000823 ORTHO05D000088 7.8e-06 55.5 103 31.1


User provided reference genes

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