Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400034810 Solanum tuberosum HOM05D004960 ORTHO05D004696 3.4e-136 488.4 262 100.0
Oeu024903.1 Olea europaea HOM05D004960 ORTHO05D004696 1.8e-44 183.7 257 44.0
Migut.J01407 Erythranthe guttata HOM05D004960 ORTHO05D004696 4.0e-44 182.6 263 45.6
Cc06_g13870 Coffea canephora HOM05D004960 ORTHO05D004696 5.2e-44 182.2 262 41.6
Dinv43330 Davidia involucrata HOM05D004960 ORTHO05D004696 4.0e-36 156.0 259 39.8
Cc06_g13860 Coffea canephora HOM05D004960 ORTHO05D004696 2.4e-33 146.7 258 37.6
SGA_v2.0_scaffold69G23316 Striga asiatica HOM05D004960 ORTHO05D004696 3.2e-33 146.4 261 38.7
Oeu037992.1 Olea europaea HOM05D004960 ORTHO05D004696 9.2e-33 144.8 228 39.9
Oeu043380.1 Olea europaea HOM05D004960 ORTHO05D004696 3.0e-31 139.8 229 40.2
Solyc07g006420.1 Solanum lycopersicum HOM05D004960 ORTHO05D004696 8.6e-31 138.3 253 36.8
Dinv41300 Davidia involucrata HOM05D004960 ORTHO05D004696 3.3e-30 136.3 256 35.2
CSS0034998 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.2e-29 134.4 250 36.4
CSS0015847 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 3.6e-29 132.9 251 37.1
Haze_10109 Corylus avellana HOM05D004960 ORTHO05D004696 2.3e-28 130.2 250 36.4
Cfa013540 Carpinus fangiana HOM05D004960 ORTHO05D004696 6.8e-28 128.6 258 36.8
CSS0049948 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 8.9e-28 128.3 250 34.4
Hma1.2p1_0921F.1_g236770 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 1.2e-27 127.9 231 34.6
Hma1.2p1_0921F.1_g236794 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 1.2e-27 127.9 231 34.6
Prupe.1G095900 Prunus persica HOM05D004960 ORTHO05D004696 1.5e-27 127.5 251 36.7
Atru.chr7.532 Acer truncatum HOM05D004960 ORTHO05D004696 4.4e-27 125.9 236 36.4
CSS0018327 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 5.8e-27 125.6 250 34.0
Hma1.2p1_0921F.1_g236760 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 5.8e-27 125.6 241 35.3
Hma1.2p1_0921F.1_g236792 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 5.8e-27 125.6 241 35.3
COL.COLO4_16060 Corchorus olitorius HOM05D004960 ORTHO05D004696 2.9e-26 123.2 266 33.5
TWI63G1126 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 4.1e-25 119.4 258 33.3
Rhsim01G0010200 Rhododendron simsii HOM05D004960 ORTHO05D004696 9.2e-25 118.2 254 32.3
Migut.K00270 Erythranthe guttata HOM05D004960 ORTHO05D004696 2.7e-24 116.7 226 33.2
Ciclev10008947m.g Citrus clementina HOM05D004960 ORTHO05D004696 3.5e-24 116.3 256 31.6
Ciclev10008957m.g Citrus clementina HOM05D004960 ORTHO05D004696 6.0e-24 115.5 256 30.9
Migut.K00271 Erythranthe guttata HOM05D004960 ORTHO05D004696 1.3e-23 114.4 233 34.3
Thecc.09G162700 Theobroma cacao HOM05D004960 ORTHO05D004696 1.3e-23 114.4 242 34.7
RcHm_v2.0_Chr4g0404711 Rosa chinensis HOM05D004960 ORTHO05D004696 1.7e-23 114.0 252 31.7
Lsat_1_v5_gn_8_65701 Lactuca sativa HOM05D004960 ORTHO05D004696 3.9e-23 112.8 257 30.4
RcHm_v2.0_Chr4g0404721 Rosa chinensis HOM05D004960 ORTHO05D004696 3.9e-23 112.8 260 33.1
MD16G1263500 Malus domestica HOM05D004960 ORTHO05D004696 1.1e-22 111.3 254 32.7
Dinv41299 Davidia involucrata HOM05D004960 ORTHO05D004696 9.6e-22 108.2 247 34.8
TWI32G0132 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 9.6e-22 108.2 254 31.1
SalBow6G1594 Salvia bowleyana HOM05D004960 ORTHO05D004696 3.6e-21 106.3 195 37.9
QL02p095902 Quercus lobata HOM05D004960 ORTHO05D004696 6.2e-21 105.5 237 32.5
TAR625G0177 Trochodendron aralioides HOM05D004960 ORTHO05D004696 6.2e-21 105.5 237 33.3
Oeu037995.1 Olea europaea HOM05D004960 ORTHO05D004696 8.1e-21 105.1 176 36.4
THA.LOC104803513 Tarenaya hassleriana HOM05D004960 ORTHO05D004696 8.1e-21 105.1 256 31.2
Actinidia38650 Actinidia chinensis HOM05D004960 ORTHO05D004696 1.4e-20 104.4 256 30.5
Eucgr.C00202 Eucalyptus grandis HOM05D004960 ORTHO05D004696 1.8e-20 104.0 232 31.9
Rhsim01G0010300 Rhododendron simsii HOM05D004960 ORTHO05D004696 3.1e-20 103.2 253 28.5
Thecc.09G163000 Theobroma cacao HOM05D004960 ORTHO05D004696 4.0e-20 102.8 235 32.8
Prupe.1G095700 Prunus persica HOM05D004960 ORTHO05D004696 9.9e-19 98.2 242 32.6
A09p12040 Brassica napus HOM05D004960 ORTHO05D004696 2.9e-18 96.7 241 31.1
BraA09t36847Z Brassica rapa HOM05D004960 ORTHO05D004696 2.9e-18 96.7 241 31.1
SalBow6G0476 Salvia bowleyana HOM05D004960 ORTHO05D004696 2.9e-18 96.7 260 32.7
BcaC04g22889 Brassica carinata HOM05D004960 ORTHO05D004696 6.4e-18 95.5 241 31.1
C09p14170 Brassica napus HOM05D004960 ORTHO05D004696 6.4e-18 95.5 241 31.1
BolC9t54315H Brassica oleracea HOM05D004960 ORTHO05D004696 6.4e-18 95.5 241 31.1
Aqoxy7G03208 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 1.1e-17 94.7 240 31.2
Dinv42772 Davidia involucrata HOM05D004960 ORTHO05D004696 1.9e-17 94.0 307 30.3
BcaC04g21483 Brassica carinata HOM05D004960 ORTHO05D004696 3.2e-17 93.2 264 26.9
C07p04050 Brassica napus HOM05D004960 ORTHO05D004696 3.2e-17 93.2 264 28.4
C09p31280 Brassica napus HOM05D004960 ORTHO05D004696 3.2e-17 93.2 264 26.9
ATR0580G174 Amborella trichopoda HOM05D004960 ORTHO05D004696 1.6e-16 90.9 223 31.8
MBI14_g30692_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.6e-16 90.9 223 30.0
BolC7t40796H Brassica oleracea HOM05D004960 ORTHO05D004696 2.1e-16 90.5 246 28.9
Manes.14G147200 Manihot esculenta HOM05D004960 ORTHO05D004696 2.1e-16 90.5 255 27.5
BcaB07g31648 Brassica carinata HOM05D004960 ORTHO05D004696 2.7e-16 90.1 242 28.1
A07p01900 Brassica napus HOM05D004960 ORTHO05D004696 2.7e-16 90.1 265 27.9
BraA07t27990Z Brassica rapa HOM05D004960 ORTHO05D004696 2.7e-16 90.1 265 27.9
PGR084G0002 Punica granatum HOM05D004960 ORTHO05D004696 2.7e-16 90.1 266 31.2
PGR142G0218 Punica granatum HOM05D004960 ORTHO05D004696 2.7e-16 90.1 266 31.2
TWI34G0908 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 3.5e-16 89.7 183 30.6
Migut.J01431 Erythranthe guttata HOM05D015143 ORTHO05D004696 4.6e-16 89.4 269 33.8
BcaB03g16662 Brassica carinata HOM05D004960 ORTHO05D004696 1.3e-15 87.8 259 28.2
Sp3g32170 Schrenkiella parvula HOM05D004960 ORTHO05D004696 6.6e-15 85.5 238 29.0
Atru.chr12.164 Acer truncatum HOM05D004960 ORTHO05D004696 1.1e-14 84.7 211 32.2
AT2G18680 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 1.1e-14 84.7 265 26.4
Aqoxy7G03206 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 1.5e-14 84.3 219 30.1
Carub.0003s3296 Capsella rubella HOM05D004960 ORTHO05D004696 1.5e-14 84.3 266 29.7
Actinidia35989 Actinidia chinensis HOM05D004960 ORTHO05D004696 1.9e-14 84.0 253 28.1
BolC9t55984H Brassica oleracea HOM05D004960 ORTHO05D004696 2.5e-14 83.6 264 26.9
Migut.J01430 Erythranthe guttata HOM05D004960 ORTHO05D004696 2.5e-14 83.6 214 34.1
TAR626G0702 Trochodendron aralioides HOM05D004960 ORTHO05D004696 3.3e-14 83.2 227 30.8
Aqoxy7G03205 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 4.3e-14 82.8 245 29.8
Peaxi162Scf00457g00315 Petunia axillaris HOM05D004960 ORTHO05D004696 4.3e-14 82.8 130 40.0
ATR0580G065 Amborella trichopoda HOM05D004960 ORTHO05D004696 7.3e-14 82.0 223 30.9
MBI14_g30696_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.3e-13 81.3 234 27.4
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.1e-13 80.5 230 29.6
C03p59340 Brassica napus HOM05D004960 ORTHO05D004696 1.4e-12 77.8 236 28.8
Lsat_1_v5_gn_7_52700 Lactuca sativa HOM05D004960 ORTHO05D004696 1.4e-12 77.8 239 27.2
AL3G52080 Arabidopsis lyrata HOM05D004960 ORTHO05D004696 2.4e-12 77.0 267 27.0
C04p38300 Brassica napus HOM05D004960 ORTHO05D004696 3.1e-12 76.6 243 30.9
Thhalv10022778m.g Eutrema salsugineum HOM05D004960 ORTHO05D004696 4.0e-12 76.3 260 28.5
TAR383G0614 Trochodendron aralioides HOM05D004960 ORTHO05D004696 5.3e-12 75.9 225 28.0
MBI14_g30701_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 9.0e-12 75.1 220 27.7
Prupe.1G095800 Prunus persica HOM05D004960 ORTHO05D004696 9.0e-12 75.1 174 36.8
Aqoxy7G03204 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 1.2e-11 74.7 265 26.8
COL.COLO4_16058 Corchorus olitorius HOM05D007179 ORTHO05D009124 1.2e-11 74.7 190 32.1
Migut.J01428 Erythranthe guttata HOM05D015143 ORTHO05D004696 1.2e-11 74.7 231 33.8
TAR383G0345 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.0e-11 73.9 223 28.7
A06p33120 Brassica napus HOM05D004960 ORTHO05D004696 2.6e-11 73.6 244 28.7
TAR383G0876 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.6e-11 73.6 223 28.7
AT2G18690 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 3.4e-11 73.2 262 27.5
HanXRQChr03g0068521 Helianthus annuus HOM05D004960 ORTHO05D004696 4.4e-11 72.8 245 28.6
Carub.0003s2660 Capsella rubella HOM05D004960 ORTHO05D004696 7.6e-11 72.0 260 30.0
MBI14_g30695_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 7.6e-11 72.0 226 26.5
MBI14_g30694_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 9.9e-11 71.6 241 26.6
TAR626G1419 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.3e-10 71.2 212 27.4
Migut.J01429 Erythranthe guttata HOM05D015143 ORTHO05D004696 1.7e-10 70.9 208 34.6
Nn2g12577 Nelumbo nucifera HOM05D004960 ORTHO05D004696 2.2e-10 70.5 274 24.8
Carub.0003s3294 Capsella rubella HOM05D004960 ORTHO05D004696 2.9e-10 70.1 259 26.6
BraA06t26242Z Brassica rapa HOM05D004960 ORTHO05D004696 4.9e-10 69.3 248 28.2
BcaC02g09087 Brassica carinata HOM05D004960 ORTHO05D004696 6.4e-10 68.9 237 30.4
Dinv41298 Davidia involucrata HOM05D004960 ORTHO05D004696 8.4e-10 68.6 108 34.3
CARHR109270 Cardamine hirsuta HOM05D004960 ORTHO05D004696 1.4e-09 67.8 264 26.1
Potri.010G250300 Populus trichocarpa HOM05D004960 ORTHO05D004696 1.4e-09 67.8 229 24.5
TAR626G1223 Trochodendron aralioides HOM05D004960 ORTHO05D004696 3.2e-09 66.6 216 25.9
MBI14_g30697_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 4.2e-09 66.2 230 25.7
Nn1g04315 Nelumbo nucifera HOM05D004960 ORTHO05D004696 4.2e-09 66.2 248 29.4
ECA240G0411 Erigeron canadensis HOM05D004960 ORTHO05D004696 7.1e-09 65.5 258 25.6
Oeu050117.1 Olea europaea HOM05D001062 ORTHO05D000884 7.1e-09 65.5 237 26.2
HanXRQChr09g0244301 Helianthus annuus HOM05D012567 ORTHO05D004696 9.3e-09 65.1 204 30.9
CSS0038346 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 1.2e-08 64.7 219 27.4
BcaC01g02853 Brassica carinata HOM05D004960 ORTHO05D004696 1.6e-08 64.3 244 26.2
BolC3t18198H Brassica oleracea HOM05D004960 ORTHO05D004696 1.6e-08 64.3 244 26.2
Lsat_1_v5_gn_7_52661 Lactuca sativa HOM05D012567 ORTHO05D004696 1.6e-08 64.3 198 29.3
ECA240G1251 Erigeron canadensis HOM05D012567 ORTHO05D004696 2.1e-08 63.9 215 27.0
CSS0022952 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 2.7e-08 63.5 219 26.9
SalBow6G2608 Salvia bowleyana HOM05D050058 ORTHO05D004696 2.7e-08 63.5 194 29.9
HPP92_010759 Vanilla planifolia HOM05D004960 ORTHO05D004696 2.7e-08 63.5 199 27.6
BcaB08g34825 Brassica carinata HOM05D004960 ORTHO05D004696 3.5e-08 63.2 244 26.2
SalBow6G5998 Salvia bowleyana HOM05D050058 ORTHO05D004696 3.5e-08 63.2 194 29.9
TAR626G1398 Trochodendron aralioides HOM05D004960 ORTHO05D004696 3.5e-08 63.2 246 26.0
Cpa.g.sc75.10 Carica papaya HOM05D004960 ORTHO05D004696 4.6e-08 62.8 236 27.1
Duzib168G0188 Durio zibethinus HOM05D004960 ORTHO05D004696 4.6e-08 62.8 241 25.7
Cpa.g.c29666.2 Carica papaya HOM05D004960 ORTHO05D004696 6.0e-08 62.4 243 28.0
PSO063G2425 Papaver somniferum HOM05D004960 ORTHO05D004696 7.8e-08 62.0 234 24.8
Nn8g40270 Nelumbo nucifera HOM05D004960 ORTHO05D004696 1.0e-07 61.6 265 23.0
HanXRQChr03g0074171 Helianthus annuus HOM05D012567 ORTHO05D004696 1.3e-07 61.2 196 27.0
Migut.J01427 Erythranthe guttata HOM05D015143 ORTHO05D004696 1.7e-07 60.8 253 29.6
HanXRQChr03g0074151 Helianthus annuus HOM05D012567 ORTHO05D004696 1.7e-07 60.8 196 27.0
Lsat_1_v5_gn_7_52621 Lactuca sativa HOM05D012567 ORTHO05D004696 1.7e-07 60.8 253 25.3
Actinidia35990 Actinidia chinensis HOM05D004960 ORTHO05D004696 3.9e-07 59.7 132 34.1
HanXRQChr03g0074111 Helianthus annuus HOM05D012567 ORTHO05D004696 3.9e-07 59.7 196 27.0
Actinidia38795 Actinidia chinensis HOM05D004960 ORTHO05D004696 6.6e-07 58.9 218 25.7
Lsat_1_v5_gn_7_52640 Lactuca sativa HOM05D012567 ORTHO05D004696 1.9e-06 57.4 197 26.4
Eucgr.J03153 Eucalyptus grandis HOM05D004960 ORTHO05D004696 2.5e-06 57.0 225 24.9
HanXRQChr06g0167601 Helianthus annuus HOM05D012567 ORTHO05D004696 2.5e-06 57.0 206 27.7
HanXRQChr16g0510881 Helianthus annuus HOM05D001062 ORTHO05D000884 2.5e-06 57.0 225 29.3
Duzib116G0744 Durio zibethinus HOM05D001062 ORTHO05D000884 4.3e-06 56.2 251 29.5


User provided reference genes

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