Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400034420 Solanum tuberosum HOM05D011435 ORTHO05D012656 1.6e-120 436.0 212 100.0
PGSC0003DMG400042437 Solanum tuberosum HOM05D011435 ORTHO05D012656 4.5e-70 268.5 202 71.3
PGSC0003DMG400039146 Solanum tuberosum HOM05D011435 ORTHO05D012656 9.3e-68 260.8 202 70.3
PGSC0003DMG400026104 Solanum tuberosum HOM05D011435 ORTHO05D012656 3.5e-67 258.8 202 70.3
PGSC0003DMG400040024 Solanum tuberosum HOM05D011435 ORTHO05D012656 1.0e-58 230.7 113 98.2
CAN.G204.18 Capsicum annuum HOM05D011435 ORTHO05D012656 1.3e-21 107.5 207 33.3
Nitab4.5_0009388g0010 Nicotiana tabacum HOM05D001149 ORTHO05D000970 2.2e-21 106.7 54 87.0
Nitab4.5_0000024g0070 Nicotiana tabacum HOM05D001149 ORTHO05D000970 3.8e-21 105.9 55 85.5
Peaxi162Scf00724g00001 Petunia axillaris HOM05D001149 ORTHO05D000970 3.2e-20 102.8 55 81.8
Sopen07g006090 Solanum pennellii HOM05D000017 ORTHO05D012656 1.5e-17 94.0 112 51.8
CAN.G356.3 Capsicum annuum HOM05D010537 ORTHO05D012397 9.2e-15 84.7 89 46.1
Dinv36784 Davidia involucrata HOM05D001149 ORTHO05D000970 7.7e-14 81.6 58 65.5
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 1.3e-13 80.9 177 35.6
Nn8g38805 Nelumbo nucifera HOM05D001149 ORTHO05D000970 2.9e-13 79.7 50 68.0
CSS0007214 Camellia sinensis var. sinensis HOM05D001149 ORTHO05D000970 3.8e-13 79.3 52 65.4
TPR.G21669 Trifolium pratense HOM05D001149 ORTHO05D000970 1.5e-12 77.4 52 59.6
DCAR_028269 Daucus carota HOM05D001149 ORTHO05D000970 2.5e-12 76.6 44 70.5
Actinidia38455 Actinidia chinensis HOM05D001149 ORTHO05D000970 3.3e-12 76.3 61 62.3
TAR369G0627 Trochodendron aralioides HOM05D001149 ORTHO05D000970 3.3e-12 76.3 50 62.0
TAR636G3444 Trochodendron aralioides HOM05D001149 ORTHO05D000970 3.3e-12 76.3 50 62.0
MBI04_g36911_MAGBIO Magnolia biondii HOM05D001149 ORTHO05D000970 4.3e-12 75.9 58 55.2
Prupe.7G206500 Prunus persica HOM05D001149 ORTHO05D000970 4.3e-12 75.9 52 59.6
TAR636G2663 Trochodendron aralioides HOM05D001149 ORTHO05D000970 1.2e-11 74.3 49 65.3
TAR624G1449 Trochodendron aralioides HOM05D001149 ORTHO05D000970 1.6e-11 73.9 52 57.7
Aqoxy7G01180 Aquilegia oxysepala HOM05D001149 ORTHO05D000970 2.1e-11 73.6 50 62.0
Manes.16G100300 Manihot esculenta HOM05D001149 ORTHO05D000970 2.1e-11 73.6 50 62.0
Sopen11g024330 Solanum pennellii HOM05D011435 ORTHO05D012656 2.8e-11 73.2 38 94.7
GSVIVG01015177001 Vitis vinifera HOM05D001149 ORTHO05D000970 2.8e-11 73.2 60 55.0
Actinidia26048 Actinidia chinensis HOM05D001149 ORTHO05D000970 3.6e-11 72.8 57 54.4
TAR383G0668 Trochodendron aralioides HOM05D001149 ORTHO05D000970 3.6e-11 72.8 58 58.6
Hund20824 Selenicereus undatus HOM05D001149 ORTHO05D000970 4.7e-11 72.4 47 66.0
COL.COLO4_18179 Corchorus olitorius HOM05D001149 ORTHO05D000970 8.0e-11 71.6 43 65.1
PSO210G1817 Papaver somniferum HOM05D001149 ORTHO05D000970 8.0e-11 71.6 50 62.0
Sopen03g021860 Solanum pennellii HOM05D011435 ORTHO05D012656 8.0e-11 71.6 38 92.1
Sopen12g015000 Solanum pennellii HOM05D000014 ORTHO05D000016 8.0e-11 71.6 38 92.1
PGSC0003DMG400037507 Solanum tuberosum HOM05D011435 ORTHO05D012656 8.0e-11 71.6 49 75.5
FAN28G0061 Fragaria x ananassa HOM05D001149 ORTHO05D000970 1.0e-10 71.2 57 54.4
Sopen04g024770 Solanum pennellii HOM05D011435 ORTHO05D012656 1.0e-10 71.2 49 75.5
PSO210G6550 Papaver somniferum HOM05D001149 ORTHO05D000970 1.8e-10 70.5 50 60.0
GSVIVG01016803001 Vitis vinifera HOM05D001149 ORTHO05D000970 1.8e-10 70.5 45 64.4
Psat4g187440 Pisum sativum HOM05D001149 ORTHO05D000970 2.3e-10 70.1 60 48.3
Sopen11g011060 Solanum pennellii HOM05D011435 ORTHO05D012656 2.3e-10 70.1 38 92.1
Sopen11g009970 Solanum pennellii HOM05D000004 ORTHO05D000002 3.0e-10 69.7 38 89.5
Glyma.09G065100 Glycine max HOM05D001149 ORTHO05D000970 4.0e-10 69.3 49 59.2
PSO063G3263 Papaver somniferum HOM05D001149 ORTHO05D000970 4.0e-10 69.3 50 60.0
PSO832G2661 Papaver somniferum HOM05D001149 ORTHO05D000970 4.0e-10 69.3 43 67.4
Actinidia21771 Actinidia chinensis HOM05D001149 ORTHO05D000970 5.2e-10 68.9 57 54.4
FvH4_1g07850 Fragaria vesca HOM05D001149 ORTHO05D000970 5.2e-10 68.9 57 52.6
FAN19G1803 Fragaria x ananassa HOM05D001149 ORTHO05D000970 5.2e-10 68.9 57 52.6
FAN26G0397 Fragaria x ananassa HOM05D001149 ORTHO05D000970 5.2e-10 68.9 57 52.6
FAN26G3251 Fragaria x ananassa HOM05D001149 ORTHO05D000970 5.2e-10 68.9 57 52.6
Gohir.D05G032300 Gossypium hirsutum HOM05D001149 ORTHO05D000970 5.2e-10 68.9 43 58.1
Gorai.009G032500 Gossypium raimondii HOM05D001149 ORTHO05D000970 5.2e-10 68.9 43 58.1
Phvul.009G230900 Phaseolus vulgaris HOM05D001149 ORTHO05D000970 5.2e-10 68.9 49 57.1
Cfa003562 Carpinus fangiana HOM05D001149 ORTHO05D000970 6.8e-10 68.6 54 55.6
RcHm_v2.0_Chr2g0093721 Rosa chinensis HOM05D001149 ORTHO05D000970 6.8e-10 68.6 57 52.6
PGSC0003DMG400042756 Solanum tuberosum HOM05D011435 ORTHO05D012656 6.8e-10 68.6 38 89.5
Thecc.09G085700 Theobroma cacao HOM05D001149 ORTHO05D000970 6.8e-10 68.6 43 60.5
Haze_15984 Corylus avellana HOM05D001149 ORTHO05D000970 1.2e-09 67.8 47 61.7
Eucgr.C00867 Eucalyptus grandis HOM05D001149 ORTHO05D000970 1.2e-09 67.8 53 52.8
SalBow6G1965 Salvia bowleyana HOM05D001149 ORTHO05D000970 1.2e-09 67.8 49 57.1
Medtr2g039920 Medicago truncatula HOM05D001149 ORTHO05D000970 1.5e-09 67.4 50 60.0
QL02p062187 Quercus lobata HOM05D001149 ORTHO05D000970 1.5e-09 67.4 50 60.0
ATR0789G080 Amborella trichopoda HOM05D001149 ORTHO05D000970 2.0e-09 67.0 42 61.9
CSS0042759 Camellia sinensis var. sinensis HOM05D001149 ORTHO05D000970 2.0e-09 67.0 53 56.6
Potri.003G042300 Populus trichocarpa HOM05D001149 ORTHO05D000970 2.0e-09 67.0 49 57.1
Sopen09g008640 Solanum pennellii HOM05D011435 ORTHO05D012656 2.0e-09 67.0 38 86.8
VMungo1309G0903 Vigna mungo HOM05D001149 ORTHO05D000970 2.0e-09 67.0 49 57.1
Duzib168G0869 Durio zibethinus HOM05D001149 ORTHO05D000970 2.6e-09 66.6 53 49.1
FAN05G0741 Fragaria x ananassa HOM05D002096 ORTHO05D002203 2.6e-09 66.6 47 63.8
FAN09G3542 Fragaria x ananassa HOM05D001149 ORTHO05D000970 2.6e-09 66.6 53 60.4
FAN23G0806 Fragaria x ananassa HOM05D001149 ORTHO05D000970 2.6e-09 66.6 57 50.9
Sed0024153 Sechium edule HOM05D001149 ORTHO05D000970 2.6e-09 66.6 55 58.2
PGSC0003DMG400043666 Solanum tuberosum HOM05D011435 ORTHO05D012656 2.6e-09 66.6 49 73.5
CANSAT56G3109 Cannabis sativa HOM05D001149 ORTHO05D000970 3.4e-09 66.2 63 50.8
CiPaw.01G223000 Carya illinoinensis HOM05D001149 ORTHO05D000970 3.4e-09 66.2 46 60.9
FvH4_6g33980 Fragaria vesca HOM05D001149 ORTHO05D000970 3.4e-09 66.2 47 63.8
FAN14G4027 Fragaria x ananassa HOM05D002096 ORTHO05D002203 3.4e-09 66.2 47 63.8
Gohir.A05G030900 Gossypium hirsutum HOM05D001149 ORTHO05D000970 3.4e-09 66.2 43 55.8
Lj3g0000405 Lotus japonicus HOM05D002096 ORTHO05D002203 3.4e-09 66.2 54 53.7
Manes.11G024300 Manihot esculenta HOM05D001149 ORTHO05D000970 3.4e-09 66.2 62 51.6
Duzib150G0496 Durio zibethinus HOM05D001149 ORTHO05D000970 4.4e-09 65.9 43 58.1
ECA240G0567 Erigeron canadensis HOM05D001149 ORTHO05D000970 4.4e-09 65.9 47 63.8
Nn6g35525 Nelumbo nucifera HOM05D001149 ORTHO05D000970 4.4e-09 65.9 50 58.0
Cfa003060 Carpinus fangiana HOM05D001149 ORTHO05D000970 5.7e-09 65.5 52 53.8
ECA247G0223 Erigeron canadensis HOM05D001149 ORTHO05D000970 5.7e-09 65.5 47 63.8
Sc12g0010380 Simmondsia chinensis HOM05D001149 ORTHO05D000970 5.7e-09 65.5 50 56.0
Atru.chr7.1623 Acer truncatum HOM05D001149 ORTHO05D000970 7.5e-09 65.1 63 46.0
AUR62009850 Chenopodium quinoa HOM05D001149 ORTHO05D000970 7.5e-09 65.1 42 61.9
Sabra03G0023100 Salix brachista HOM05D001149 ORTHO05D000970 7.5e-09 65.1 52 53.8
MELO3C013075.2 Cucumis melo HOM05D001149 ORTHO05D000970 9.8e-09 64.7 56 53.6
DCAR_016142 Daucus carota HOM05D001149 ORTHO05D000970 9.8e-09 64.7 40 67.5
Glyma.07G008100 Glycine max HOM05D001149 ORTHO05D000970 9.8e-09 64.7 50 58.0
Glyma.08G190900 Glycine max HOM05D001149 ORTHO05D000970 9.8e-09 64.7 50 58.0
Glyma.15G025200 Glycine max HOM05D001149 ORTHO05D000970 9.8e-09 64.7 51 54.9
Lsat_1_v5_gn_7_34200 Lactuca sativa HOM05D001149 ORTHO05D000970 9.8e-09 64.7 45 66.7
Lalb_Chr25g0280841 Lupinus albus HOM05D001149 ORTHO05D000970 9.8e-09 64.7 48 58.3
Sed0002441 Sechium edule HOM05D001149 ORTHO05D000970 9.8e-09 64.7 54 57.4
Sed0023932 Sechium edule HOM05D001149 ORTHO05D000970 9.8e-09 64.7 54 57.4
TWI31G1276 Tripterygium wilfordii HOM05D001149 ORTHO05D000970 9.8e-09 64.7 53 52.8
VMungo0331G1967 Vigna mungo HOM05D001149 ORTHO05D000970 9.8e-09 64.7 50 58.0
CsaV3_3G043680 Cucumis sativus L. HOM05D001149 ORTHO05D000970 1.3e-08 64.3 56 53.6
HanXRQChr09g0238021 Helianthus annuus HOM05D001149 ORTHO05D000970 1.3e-08 64.3 58 56.9
Sed0002210 Sechium edule HOM05D001149 ORTHO05D000970 1.3e-08 64.3 54 57.4
CANSAT56G0624 Cannabis sativa HOM05D001149 ORTHO05D000970 1.7e-08 63.9 53 50.9
CANSAT56G2554 Cannabis sativa HOM05D001149 ORTHO05D000970 1.7e-08 63.9 53 50.9
CiPaw.02G138600 Carya illinoinensis HOM05D001149 ORTHO05D000970 1.7e-08 63.9 47 59.6
Lsat_1_v5_gn_1_35720 Lactuca sativa HOM05D001149 ORTHO05D000970 1.7e-08 63.9 59 54.2
Lj3g0008632 Lotus japonicus HOM05D001149 ORTHO05D000970 1.7e-08 63.9 47 55.3
PGSC0003DMG400002490 Solanum tuberosum HOM05D001149 ORTHO05D000970 1.7e-08 63.9 45 60.0
Lj6g0013492 Lotus japonicus HOM05D001149 ORTHO05D000970 2.2e-08 63.5 47 55.3
SGA_v2.0_scaffold21G09401 Striga asiatica HOM05D001149 ORTHO05D000970 2.2e-08 63.5 44 61.4
Gohir.D05G138000 Gossypium hirsutum HOM05D001149 ORTHO05D000970 2.9e-08 63.2 52 57.7
HanXRQChr03g0060311 Helianthus annuus HOM05D001149 ORTHO05D000970 2.9e-08 63.2 58 55.2
Prupe.3G046300 Prunus persica HOM05D001149 ORTHO05D000970 2.9e-08 63.2 47 57.4
RcHm_v2.0_Chr2g0143991 Rosa chinensis HOM05D001149 ORTHO05D000970 2.9e-08 63.2 54 59.3
Solyc03g121790.2 Solanum lycopersicum HOM05D001149 ORTHO05D000970 2.9e-08 63.2 45 57.8
Sopen01g032650 Solanum pennellii HOM05D001149 ORTHO05D000970 2.9e-08 63.2 45 57.8
Sopen03g040600 Solanum pennellii HOM05D001149 ORTHO05D000970 2.9e-08 63.2 45 57.8
vmacro23044 Vaccinium macrocarpon HOM05D001149 ORTHO05D000970 2.9e-08 63.2 45 57.8
Medtr8g017850 Medicago truncatula HOM05D001149 ORTHO05D000970 3.7e-08 62.8 46 54.3
Nitab4.5_0007622g0040 Nicotiana tabacum HOM05D001149 ORTHO05D000970 3.7e-08 62.8 40 65.0
Nitab4.5_0011635g0010 Nicotiana tabacum HOM05D001149 ORTHO05D000970 3.7e-08 62.8 40 65.0
Phvul.010G137100 Phaseolus vulgaris HOM05D001149 ORTHO05D000970 3.7e-08 62.8 64 45.3
Gorai.010G084400 Gossypium raimondii HOM05D001149 ORTHO05D000970 4.9e-08 62.4 53 50.9
Hma1.2p1_1128F.1_g259750 Hydrangea macrophylla HOM05D001149 ORTHO05D000970 4.9e-08 62.4 45 55.6
TPR.G27681 Trifolium pratense HOM05D001149 ORTHO05D000970 4.9e-08 62.4 61 44.3
Cpa.g.sc25.73 Carica papaya HOM05D001149 ORTHO05D000970 6.4e-08 62.0 51 54.9
Cc04_g01730 Coffea canephora HOM05D001149 ORTHO05D000970 6.4e-08 62.0 41 63.4
Gohir.A05G136000 Gossypium hirsutum HOM05D001149 ORTHO05D000970 6.4e-08 62.0 52 57.7
Lalb_Chr14g0372741 Lupinus albus HOM05D001149 ORTHO05D000970 6.4e-08 62.0 57 49.1
Manes.04G141000 Manihot esculenta HOM05D001149 ORTHO05D000970 6.4e-08 62.0 45 60.0
Phvul.005G157900 Phaseolus vulgaris HOM05D001149 ORTHO05D000970 6.4e-08 62.0 50 56.0
MD09G1190400 Malus domestica HOM05D001149 ORTHO05D000970 8.3e-08 61.6 45 60.0
Sopen03g007270 Solanum pennellii HOM05D011435 ORTHO05D012656 8.3e-08 61.6 38 84.2
Gohir.A06G073566 Gossypium hirsutum HOM05D001149 ORTHO05D000970 1.1e-07 61.2 53 50.9
Peaxi162Scf00038g01633 Petunia axillaris HOM05D001149 ORTHO05D000970 1.1e-07 61.2 40 62.5
Sed0011643 Sechium edule HOM05D001149 ORTHO05D000970 1.1e-07 61.2 54 57.4
Sed0014485 Sechium edule HOM05D001149 ORTHO05D000970 1.1e-07 61.2 54 57.4
Thecc.06G114400 Theobroma cacao HOM05D001149 ORTHO05D000970 1.1e-07 61.2 61 52.5
TPR.G6563 Trifolium pratense HOM05D001149 ORTHO05D000970 1.1e-07 61.2 49 55.1
ClCG07G013920 Citrullus lanatus HOM05D001149 ORTHO05D000970 1.4e-07 60.8 55 52.7
Psat5g291960 Pisum sativum HOM05D001149 ORTHO05D000970 1.4e-07 60.8 47 55.3
Atru.chr1.3785 Acer truncatum HOM05D001149 ORTHO05D000970 1.8e-07 60.5 46 58.7
HPP92_003980 Vanilla planifolia HOM05D001149 ORTHO05D000970 1.8e-07 60.5 48 56.2
CiPaw.03G212800 Carya illinoinensis HOM05D001149 ORTHO05D000970 2.4e-07 60.1 43 55.8
Lj3g0025342 Lotus japonicus HOM05D001149 ORTHO05D000970 3.2e-07 59.7 52 51.9
Medtr2g099810 Medicago truncatula HOM05D001149 ORTHO05D000970 3.2e-07 59.7 59 49.2
QL05p009975 Quercus lobata HOM05D001149 ORTHO05D000970 3.2e-07 59.7 62 46.8
Sp3g12130 Schrenkiella parvula HOM05D001149 ORTHO05D000970 3.2e-07 59.7 43 58.1
Sed0022697 Sechium edule HOM05D001149 ORTHO05D000970 3.2e-07 59.7 46 58.7
Sed0026387 Sechium edule HOM05D001149 ORTHO05D000970 3.2e-07 59.7 54 55.6
Glyma.13G348600 Glycine max HOM05D001149 ORTHO05D000970 4.1e-07 59.3 64 45.3
Lalb_Chr22g0351861 Lupinus albus HOM05D001149 ORTHO05D000970 4.1e-07 59.3 50 56.0
SGA_v2.0_scaffold4G02048 Striga asiatica HOM05D001149 ORTHO05D000970 4.1e-07 59.3 43 53.5
VMungo1080G1335 Vigna mungo HOM05D001149 ORTHO05D000970 4.1e-07 59.3 51 51.0
arahy.Tifrunner.gnm1.ann1.V50H5Q Arachis hypogaea HOM05D001149 ORTHO05D000970 5.4e-07 58.9 60 43.3
COL.COLO4_30682 Corchorus olitorius HOM05D001149 ORTHO05D000970 5.4e-07 58.9 62 50.0
Duzib235G0544 Durio zibethinus HOM05D001149 ORTHO05D000970 5.4e-07 58.9 45 60.0
PGSC0003DMG400044352 Solanum tuberosum HOM05D011435 ORTHO05D012656 5.4e-07 58.9 33 87.9
arahy.Tifrunner.gnm1.ann1.RE721R Arachis hypogaea HOM05D001149 ORTHO05D000970 7.0e-07 58.5 64 46.9
arahy.Tifrunner.gnm1.ann1.UNXD21 Arachis hypogaea HOM05D001149 ORTHO05D000970 7.0e-07 58.5 64 46.9
Carub.0003s1346 Capsella rubella HOM05D001149 ORTHO05D000970 9.2e-07 58.2 54 50.0
PGR119G2254 Punica granatum HOM05D001149 ORTHO05D000970 9.2e-07 58.2 52 48.1
Migut.D00959 Erythranthe guttata HOM05D001149 ORTHO05D000970 1.2e-06 57.8 43 58.1
Ciclev10027128m.g Citrus clementina HOM05D001149 ORTHO05D000970 2.0e-06 57.0 58 48.3
BcaC01g03968 Brassica carinata HOM05D001149 ORTHO05D000970 2.7e-06 56.6 43 55.8
BolC3t16929H Brassica oleracea HOM05D001149 ORTHO05D000970 2.7e-06 56.6 43 55.8
BraA03t13000Z Brassica rapa HOM05D001149 ORTHO05D000970 2.7e-06 56.6 43 55.8
CARHR088700 Cardamine hirsuta HOM05D001149 ORTHO05D000970 2.7e-06 56.6 52 48.1
Thhalv10021776m.g Eutrema salsugineum HOM05D001149 ORTHO05D000970 2.7e-06 56.6 59 47.5
ECA234G4346 Erigeron canadensis HOM05D001149 ORTHO05D000970 3.5e-06 56.2 45 53.3
HanXRQChr02g0031761 Helianthus annuus HOM05D001149 ORTHO05D000970 3.5e-06 56.2 56 53.6
HanXRQChr10g0312391 Helianthus annuus HOM05D001149 ORTHO05D000970 3.5e-06 56.2 43 55.8
AL3G26070 Arabidopsis lyrata HOM05D001149 ORTHO05D000970 5.9e-06 55.5 48 50.0
SMO343G0137 Selaginella moellendorffii HOM05D001149 ORTHO05D000970 7.8e-06 55.1 46 50.0


User provided reference genes

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