Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 6.9e-87 323.9 164 100.0
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 1.5e-86 322.8 164 99.4
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 4.5e-86 321.2 164 98.8
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 1.8e-82 309.3 164 93.9
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 3.4e-78 295.0 164 89.6
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 1.4e-74 283.1 164 87.2
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 6.5e-69 264.2 164 77.4
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 2.5e-68 262.3 164 78.7
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 2.5e-68 262.3 164 78.7
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 8.0e-67 257.3 164 76.8
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 1.0e-66 256.9 164 78.0
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 1.0e-66 256.9 164 78.0
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 1.4e-66 256.5 164 77.4
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 3.0e-66 255.4 164 76.8
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 1.5e-65 253.1 164 76.8
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 1.5e-65 253.1 164 75.6
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 2.0e-65 252.7 164 75.6
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 2.6e-65 252.3 164 75.0
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 2.6e-65 252.3 164 75.6
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 7.5e-65 250.8 164 73.2
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 7.5e-65 250.8 164 73.8
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 9.7e-65 250.4 164 73.8
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 1.3e-64 250.0 164 71.3
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 2.2e-64 249.2 164 71.3
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 2.8e-64 248.8 164 73.2
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 3.7e-64 248.4 164 73.2
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 3.7e-64 248.4 164 72.6
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 3.7e-64 248.4 164 72.6
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 3.7e-64 248.4 164 73.2
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 4.8e-64 248.1 166 72.3
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 6.3e-64 247.7 164 73.2
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 6.3e-64 247.7 164 73.8
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 8.2e-64 247.3 164 72.0
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 8.2e-64 247.3 164 71.3
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 1.1e-63 246.9 164 73.8
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 1.8e-63 246.1 166 71.1
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 2.4e-63 245.7 164 69.5
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 2.4e-63 245.7 164 69.5
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 2.4e-63 245.7 164 70.1
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 2.4e-63 245.7 164 72.6
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 3.1e-63 245.4 164 68.9
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 3.1e-63 245.4 164 72.6
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 4.1e-63 245.0 166 71.7
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 7.0e-63 244.2 164 71.3
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 7.0e-63 244.2 164 69.5
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 7.0e-63 244.2 164 72.0
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 9.1e-63 243.8 164 70.7
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 1.2e-62 243.4 164 70.1
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 1.2e-62 243.4 164 72.0
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 1.6e-62 243.0 164 72.0
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 2.0e-62 242.7 164 70.1
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 2.7e-62 242.3 164 69.5
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 2.7e-62 242.3 164 68.9
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 2.7e-62 242.3 164 67.7
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 3.5e-62 241.9 164 70.1
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 3.5e-62 241.9 164 68.3
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 4.5e-62 241.5 164 70.7
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 5.9e-62 241.1 164 72.0
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 5.9e-62 241.1 164 68.3
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 5.9e-62 241.1 164 72.6
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 7.7e-62 240.7 164 72.6
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 1.0e-61 240.4 164 72.6
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 1.3e-61 240.0 164 69.5
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 1.7e-61 239.6 164 67.7
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 1.7e-61 239.6 164 70.1
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 2.2e-61 239.2 162 67.9
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 2.9e-61 238.8 164 67.7
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 2.9e-61 238.8 158 71.5
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 3.8e-61 238.4 164 68.9
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 3.8e-61 238.4 164 69.5
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 3.8e-61 238.4 164 69.5
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 5.0e-61 238.0 164 69.5
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 5.0e-61 238.0 162 69.8
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 6.5e-61 237.7 164 68.9
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 6.5e-61 237.7 164 68.9
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 8.5e-61 237.3 164 70.7
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 1.1e-60 236.9 164 68.9
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 1.9e-60 236.1 164 72.6
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 3.2e-60 235.3 164 70.1
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 5.5e-60 234.6 188 64.9
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 5.5e-60 234.6 164 70.1
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 7.2e-60 234.2 164 69.5
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 1.2e-59 233.4 164 65.2
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 1.2e-59 233.4 164 65.2
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 1.6e-59 233.0 164 68.3
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 1.6e-59 233.0 164 68.3
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 2.1e-59 232.6 185 61.6
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 2.1e-59 232.6 193 60.1
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 2.7e-59 232.3 173 63.6
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 2.7e-59 232.3 157 71.3
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 3.6e-59 231.9 164 68.9
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 4.7e-59 231.5 164 65.9
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 6.1e-59 231.1 164 66.5
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 8.0e-59 230.7 164 67.7
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 1.0e-58 230.3 158 69.0
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 1.4e-58 229.9 164 65.2
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 1.5e-57 226.5 164 66.5
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 9.8e-57 223.8 164 72.6
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 1.3e-56 223.4 164 64.6
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 2.2e-56 222.6 164 64.0
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 5.4e-55 218.0 191 55.5
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 3.5e-54 215.3 164 67.1
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 1.0e-53 213.8 174 62.1
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 2.3e-53 212.6 164 61.0
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 1.5e-52 209.9 171 62.6
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 2.8e-51 205.7 164 60.4
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 1.8e-50 203.0 162 57.4
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 3.1e-47 192.2 170 57.6
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 3.1e-47 192.2 170 57.6
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 2.0e-46 189.5 133 66.9
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 1.0e-45 187.2 167 59.3
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 3.3e-44 182.2 98 93.9
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 4.3e-44 181.8 164 50.6
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 2.8e-43 179.1 132 65.2
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 6.1e-43 177.9 165 57.6
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 2.2e-40 169.5 168 49.4
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 6.4e-40 167.9 221 45.7
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 2.4e-39 166.0 164 50.6
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 6.0e-38 161.4 168 49.4
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 1.5e-36 156.8 117 67.5
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 5.6e-36 154.8 91 87.9
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 2.0e-33 146.4 161 49.1
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 1.1e-31 140.6 96 66.7
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 2.4e-31 139.4 121 50.4
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 1.5e-28 130.2 83 74.7
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 1.9e-28 129.8 83 78.3
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 2.5e-28 129.4 92 70.7
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 3.3e-28 129.0 82 73.2
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 9.5e-28 127.5 82 76.8
Cre02.g142150 Chlamydomonas reinhardtii HOM05D005137 ORTHO05D006478 2.0e-25 119.8 118 50.0
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 7.5e-25 117.9 99 63.6
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 3.9e-21 105.5 66 72.7
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 6.2e-19 98.2 69 66.7
MCO05G717 Micromonas commoda HOM05D005137 ORTHO05D006478 1.5e-17 93.6 119 35.3
BcaB04g17880 Brassica carinata HOM05D005137 ORTHO05D006478 2.2e-16 89.7 57 61.4
Zm00001eb289230 Zea mays HOM05D005137 ORTHO05D006478 2.9e-16 89.4 82 50.0
Lj7C297T10 Lonicera japonica HOM05D005137 ORTHO05D006478 2.3e-13 79.7 46 76.1
vmacro12499 Vaccinium macrocarpon HOM05D005137 ORTHO05D006478 2.3e-13 79.7 47 74.5
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 2.5e-12 76.3 46 73.9
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 4.3e-12 75.5 48 75.0
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 1.2e-11 73.9 53 64.2
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 2.1e-11 73.2 76 55.3
TPR.G27590 Trifolium pratense HOM05D005137 ORTHO05D006478 1.1e-10 70.9 46 65.2
Medtr2g069440 Medicago truncatula HOM05D003000 ORTHO05D003699 2.2e-08 63.2 44 65.9
BraA09t38755Z Brassica rapa HOM05D005137 ORTHO05D006478 1.6e-06 57.0 32 78.1


User provided reference genes

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