Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400033554 Solanum tuberosum HOM05D006982 ORTHO05D008909 8.6e-30 132.9 62 100.0
Solyc03g013250.4 Solanum lycopersicum HOM05D006982 ORTHO05D008909 1.9e-16 88.6 43 97.7
Sopen03g016600 Solanum pennellii HOM05D006982 ORTHO05D008909 1.9e-16 88.6 43 97.7
CAN.G734.5 Capsicum annuum HOM05D006982 ORTHO05D008909 2.0e-15 85.1 43 93.0
Nitab4.5_0001637g0060 Nicotiana tabacum HOM05D006982 ORTHO05D008909 1.7e-14 82.0 43 88.4
Nitab4.5_0005196g0040 Nicotiana tabacum HOM05D006982 ORTHO05D008909 1.7e-14 82.0 43 88.4
Peaxi162Scf00451g00425 Petunia axillaris HOM05D006982 ORTHO05D008909 2.8e-12 74.7 43 83.7
Cc07_g04010 Coffea canephora HOM05D006982 ORTHO05D008909 3.1e-11 71.2 43 76.7
vmacro05662 Vaccinium macrocarpon HOM05D006982 ORTHO05D008909 8.9e-11 69.7 43 76.7
Aqoxy3G00454 Aquilegia oxysepala HOM05D006982 ORTHO05D008909 2.6e-10 68.2 43 69.8
Glyma.13G058700 Glycine max HOM05D006982 ORTHO05D008909 3.4e-10 67.8 43 74.4
Sabra17G0079600 Salix brachista HOM05D006982 ORTHO05D008909 3.4e-10 67.8 44 72.7
GSVIVG01011493001 Vitis vinifera HOM05D006982 ORTHO05D008909 7.5e-10 66.6 43 72.1
Atru.chr8.390 Acer truncatum HOM05D006982 ORTHO05D008909 9.8e-10 66.2 43 74.4
BraA06t26915Z Brassica rapa HOM05D006982 ORTHO05D008909 9.8e-10 66.2 55 58.2
CSS0035536 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 9.8e-10 66.2 44 68.2
Ciclev10012958m.g Citrus clementina HOM05D006982 ORTHO05D008909 9.8e-10 66.2 43 69.8
Gohir.D09G010400 Gossypium hirsutum HOM05D006982 ORTHO05D008909 9.8e-10 66.2 43 72.1
Gorai.006G012000 Gossypium raimondii HOM05D006982 ORTHO05D008909 9.8e-10 66.2 43 72.1
Hund13166 Selenicereus undatus HOM05D006982 ORTHO05D008909 9.8e-10 66.2 45 66.7
AUR62018155 Chenopodium quinoa HOM05D006982 ORTHO05D008909 1.3e-09 65.9 43 69.8
Duzib187G0332 Durio zibethinus HOM05D006982 ORTHO05D008909 1.3e-09 65.9 43 67.4
Manes.01G098700 Manihot esculenta HOM05D006982 ORTHO05D008909 1.3e-09 65.9 43 74.4
Rhsim10G0045300 Rhododendron simsii HOM05D006982 ORTHO05D008909 1.3e-09 65.9 43 74.4
VMungo0464G0061 Vigna mungo HOM05D006982 ORTHO05D008909 1.3e-09 65.9 43 72.1
Actinidia07827 Actinidia chinensis HOM05D006982 ORTHO05D008909 1.7e-09 65.5 44 68.2
Eucgr.I01983 Eucalyptus grandis HOM05D006982 ORTHO05D008909 1.7e-09 65.5 43 69.8
Lj2g0023544 Lotus japonicus HOM05D006982 ORTHO05D008909 1.7e-09 65.5 43 67.4
Potri.017G090400 Populus trichocarpa HOM05D006982 ORTHO05D008909 1.7e-09 65.5 43 74.4
Thecc.04G091200 Theobroma cacao HOM05D006982 ORTHO05D008909 1.7e-09 65.5 43 69.8
C02p55410 Brassica napus HOM05D006982 ORTHO05D008909 2.2e-09 65.1 60 55.0
CANSAT64G0008 Cannabis sativa HOM05D006982 ORTHO05D008909 2.2e-09 65.1 43 72.1
Dinv11484 Davidia involucrata HOM05D006982 ORTHO05D008909 2.2e-09 65.1 43 69.8
EL10Ac2g03084 Beta vulgaris HOM05D006982 ORTHO05D008909 2.9e-09 64.7 42 66.7
Glyma.19G027800 Glycine max HOM05D006982 ORTHO05D008909 2.9e-09 64.7 43 72.1
HanXRQChr07g0199461 Helianthus annuus HOM05D006982 ORTHO05D008909 2.9e-09 64.7 43 62.8
Phvul.004G033900 Phaseolus vulgaris HOM05D006982 ORTHO05D008909 2.9e-09 64.7 43 67.4
TPR.G26172 Trifolium pratense HOM05D006982 ORTHO05D008909 2.9e-09 64.7 43 69.8
AL5G19280 Arabidopsis lyrata HOM05D006982 ORTHO05D008909 3.7e-09 64.3 43 69.8
Sp2g17880 Schrenkiella parvula HOM05D006982 ORTHO05D008909 3.7e-09 64.3 43 69.8
Thhalv10005014m.g Eutrema salsugineum HOM05D006982 ORTHO05D008909 4.9e-09 63.9 43 67.4
Hma1.2p1_1813F.1_g303760 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 6.4e-09 63.5 43 69.8
Hma1.2p1_3044F.1_g332060 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 6.4e-09 63.5 43 69.8
Medtr6g013815 Medicago truncatula HOM05D006982 ORTHO05D008909 6.4e-09 63.5 43 69.8
RcHm_v2.0_Chr2g0166501 Rosa chinensis HOM05D006982 ORTHO05D008909 6.4e-09 63.5 43 69.8
A06p40000 Brassica napus HOM05D006982 ORTHO05D008909 8.3e-09 63.2 43 67.4
C02p55480 Brassica napus HOM05D006982 ORTHO05D008909 8.3e-09 63.2 43 69.8
C07p38170 Brassica napus HOM05D006982 ORTHO05D008909 8.3e-09 63.2 43 65.1
BolC2t11604H Brassica oleracea HOM05D006982 ORTHO05D008909 8.3e-09 63.2 43 69.8
BolC7t44339H Brassica oleracea HOM05D006982 ORTHO05D008909 8.3e-09 63.2 43 65.1
Aa31LG2G3980 Aethionema arabicum HOM05D006982 ORTHO05D008909 1.1e-08 62.8 43 67.4
AT3G29280 Arabidopsis thaliana HOM05D006982 ORTHO05D008909 1.1e-08 62.8 43 67.4
BcaB07g30087 Brassica carinata HOM05D006982 ORTHO05D008909 1.1e-08 62.8 43 67.4
A02p36510 Brassica napus HOM05D006982 ORTHO05D008909 1.1e-08 62.8 43 67.4
BolC2t11598H Brassica oleracea HOM05D006982 ORTHO05D008909 1.1e-08 62.8 43 67.4
BraA02t08647Z Brassica rapa HOM05D006982 ORTHO05D008909 1.1e-08 62.8 43 67.4
Cpa.g.sc14.148 Carica papaya HOM05D006982 ORTHO05D008909 1.1e-08 62.8 46 60.9
FvH4_6g47420 Fragaria vesca HOM05D006982 ORTHO05D008909 1.1e-08 62.8 43 65.1
FAN02G3418 Fragaria x ananassa HOM05D006982 ORTHO05D008909 1.1e-08 62.8 43 65.1
FAN14G3321 Fragaria x ananassa HOM05D006982 ORTHO05D008909 1.1e-08 62.8 43 65.1
Psat1g070160 Pisum sativum HOM05D006982 ORTHO05D008909 1.1e-08 62.8 43 67.4
QL02p039506 Quercus lobata HOM05D006982 ORTHO05D008909 1.1e-08 62.8 43 67.4
CARHR292480 Cardamine hirsuta HOM05D006982 ORTHO05D008909 1.4e-08 62.4 43 67.4
Sc11g0004740 Simmondsia chinensis HOM05D006982 ORTHO05D008909 1.4e-08 62.4 46 69.6
MSTRG.3019 Avicennia marina HOM05D006982 ORTHO05D008909 1.9e-08 62.0 43 65.1
CiPaw.03G091200 Carya illinoinensis HOM05D006982 ORTHO05D008909 1.9e-08 62.0 43 67.4
SalBow1G5236 Salvia bowleyana HOM05D006982 ORTHO05D008909 1.9e-08 62.0 43 67.4
SGA_v2.0_scaffold4G02409 Striga asiatica HOM05D006982 ORTHO05D008909 1.9e-08 62.0 43 65.1
COL.COLO4_21380 Corchorus olitorius HOM05D006982 ORTHO05D008909 2.4e-08 61.6 43 62.8
Lj4A116T80 Lonicera japonica HOM05D006982 ORTHO05D008909 2.4e-08 61.6 43 69.8
RcHm_v2.0_Chr2g0166491 Rosa chinensis HOM05D006982 ORTHO05D008909 2.4e-08 61.6 43 67.4
AUR62042567 Chenopodium quinoa HOM05D006982 ORTHO05D008909 3.2e-08 61.2 42 66.7
Prupe.3G258600 Prunus persica HOM05D006982 ORTHO05D008909 3.2e-08 61.2 43 62.8
TWI60G0050 Tripterygium wilfordii HOM05D006982 ORTHO05D008909 3.2e-08 61.2 43 67.4
Carub.0005s0799 Capsella rubella HOM05D006982 ORTHO05D008909 4.1e-08 60.8 43 65.1
Haze_14468 Corylus avellana HOM05D006982 ORTHO05D008909 4.1e-08 60.8 43 65.1
ECA238G0675 Erigeron canadensis HOM05D006982 ORTHO05D008909 4.1e-08 60.8 43 60.5
MD09G1061600 Malus domestica HOM05D006982 ORTHO05D008909 4.1e-08 60.8 43 62.8
Ah.10g031970 Amaranthus hybridus HOM05D006982 ORTHO05D008909 5.4e-08 60.5 42 64.3
BcaC03g17569 Brassica carinata HOM05D006982 ORTHO05D008909 7.1e-08 60.1 43 65.1
Migut.H00650 Erythranthe guttata HOM05D006982 ORTHO05D008909 9.2e-08 59.7 41 63.4
FAN09G4389 Fragaria x ananassa HOM05D006982 ORTHO05D008909 1.2e-07 59.3 43 62.8
Nn4g23351 Nelumbo nucifera HOM05D006982 ORTHO05D008909 1.2e-07 59.3 43 62.8
PGR004G0184 Punica granatum HOM05D006982 ORTHO05D008909 1.2e-07 59.3 43 60.5
THA.LOC104805498 Tarenaya hassleriana HOM05D006982 ORTHO05D008909 1.2e-07 59.3 43 58.1
TAR629G3328 Trochodendron aralioides HOM05D006982 ORTHO05D008909 1.2e-07 59.3 43 62.8
Gohir.A09G011401 Gossypium hirsutum HOM05D006982 ORTHO05D008909 1.6e-07 58.9 36 75.0
ATR0064G116 Amborella trichopoda HOM05D006982 ORTHO05D008909 2.1e-07 58.5 43 60.5
CsaV3_3G026330 Cucumis sativus L. HOM05D006982 ORTHO05D008909 2.1e-07 58.5 43 60.5
MELO3C014935.2 Cucumis melo HOM05D006982 ORTHO05D008909 2.7e-07 58.2 43 60.5
Sed0004734 Sechium edule HOM05D006982 ORTHO05D008909 2.7e-07 58.2 43 60.5
Zm00001eb011170 Zea mays HOM05D006982 ORTHO05D008909 2.7e-07 58.2 43 58.1
PSO017G1487 Papaver somniferum HOM05D006982 ORTHO05D008909 3.5e-07 57.8 43 60.5
ClCG05G014130 Citrullus lanatus HOM05D006982 ORTHO05D008909 6.0e-07 57.0 43 58.1
Lsat_1_v5_gn_2_87800 Lactuca sativa HOM05D006982 ORTHO05D008909 6.0e-07 57.0 43 58.1
PSO478G0313 Papaver somniferum HOM05D006982 ORTHO05D008909 7.8e-07 56.6 43 58.1
Lalb_Chr02g0159031 Lupinus albus HOM05D006982 ORTHO05D008909 1.3e-06 55.8 41 61.0
Os03g0209700 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 3.9e-06 54.3 43 55.8
Os03g0257000 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 3.9e-06 54.3 43 51.2
unitig_899.g15159 Utricularia gibba HOM05D006982 ORTHO05D008909 3.9e-06 54.3 40 60.0


User provided reference genes

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