Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 5.3e-56 220.7 106 100.0
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 7.0e-56 220.3 106 99.1
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 7.0e-56 220.3 106 99.1
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 2.9e-54 214.9 106 97.2
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 8.0e-52 206.8 106 92.5
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.8e-48 195.7 104 83.7
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 1.8e-48 195.7 104 83.7
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.8e-48 195.7 104 83.7
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 2.4e-48 195.3 104 82.7
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 2.4e-48 195.3 106 84.0
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 1.6e-47 192.6 104 81.7
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 1.6e-47 192.6 104 83.7
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 4.5e-47 191.0 106 79.2
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 5.9e-47 190.7 104 83.7
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 1.3e-46 189.5 104 80.8
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 1.7e-46 189.1 106 82.1
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 1.7e-46 189.1 104 82.7
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 3.8e-46 188.0 106 80.2
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 5.0e-46 187.6 106 80.2
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 5.0e-46 187.6 104 83.7
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 6.5e-46 187.2 100 85.0
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 6.5e-46 187.2 100 84.0
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 8.5e-46 186.8 104 81.7
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 1.1e-45 186.4 102 83.3
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 1.1e-45 186.4 101 82.2
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.1e-45 186.4 104 81.7
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 1.1e-45 186.4 104 81.7
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 1.1e-45 186.4 102 81.4
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 1.5e-45 186.0 104 81.7
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 1.9e-45 185.7 101 82.2
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 1.9e-45 185.7 101 82.2
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 2.5e-45 185.3 102 80.4
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 2.5e-45 185.3 103 81.6
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 4.2e-45 184.5 102 79.4
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 4.2e-45 184.5 101 83.2
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 7.2e-45 183.7 104 79.8
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 9.5e-45 183.3 106 80.2
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 9.5e-45 183.3 106 82.1
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 9.5e-45 183.3 106 77.4
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 1.2e-44 183.0 102 82.4
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 1.6e-44 182.6 103 78.6
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 2.1e-44 182.2 102 79.4
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 2.1e-44 182.2 102 80.4
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 2.1e-44 182.2 104 78.8
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 2.8e-44 181.8 102 82.4
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 2.8e-44 181.8 102 82.4
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 3.6e-44 181.4 101 79.2
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 4.7e-44 181.0 101 78.2
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 6.1e-44 180.6 102 81.4
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 6.1e-44 180.6 101 80.2
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 6.1e-44 180.6 102 81.4
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 8.0e-44 180.3 102 80.4
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 8.0e-44 180.3 102 77.5
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 1.0e-43 179.9 102 79.4
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 1.0e-43 179.9 102 79.4
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 1.4e-43 179.5 101 78.2
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 1.4e-43 179.5 101 78.2
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 1.4e-43 179.5 101 78.2
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 1.4e-43 179.5 102 81.4
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 1.8e-43 179.1 104 78.8
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 2.3e-43 178.7 102 79.4
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 2.3e-43 178.7 102 81.4
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 4.0e-43 177.9 101 78.2
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 8.8e-43 176.8 102 74.5
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 1.2e-42 176.4 103 77.7
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.2e-42 176.4 103 77.7
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.2e-42 176.4 103 77.7
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.2e-42 176.4 103 77.7
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.2e-42 176.4 103 77.7
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 1.2e-42 176.4 101 81.2
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 1.2e-42 176.4 101 77.2
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 1.5e-42 176.0 104 80.8
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.5e-42 176.0 103 77.7
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 1.5e-42 176.0 103 77.7
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 2.0e-42 175.6 101 78.2
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 3.4e-42 174.9 103 79.6
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 3.4e-42 174.9 103 79.6
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 4.4e-42 174.5 103 79.6
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 4.4e-42 174.5 101 75.2
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 4.4e-42 174.5 103 76.7
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 4.4e-42 174.5 103 79.6
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 4.4e-42 174.5 101 77.2
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 5.7e-42 174.1 101 77.2
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 5.7e-42 174.1 101 78.2
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 7.5e-42 173.7 103 79.6
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 7.5e-42 173.7 100 78.0
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 7.5e-42 173.7 104 78.8
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 9.8e-42 173.3 103 80.6
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 9.8e-42 173.3 101 77.2
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 1.3e-41 172.9 101 78.2
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 2.8e-41 171.8 103 77.7
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 2.8e-41 171.8 102 78.4
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 2.8e-41 171.8 102 78.4
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 2.8e-41 171.8 102 78.4
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 2.8e-41 171.8 102 78.4
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 2.8e-41 171.8 102 78.4
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 3.7e-41 171.4 103 79.6
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 3.7e-41 171.4 103 79.6
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 3.7e-41 171.4 103 79.6
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 3.7e-41 171.4 103 79.6
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 3.7e-41 171.4 103 79.6
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 3.7e-41 171.4 103 79.6
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 4.9e-41 171.0 101 74.3
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 8.3e-41 170.2 101 73.3
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 1.1e-40 169.9 101 77.2
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 4.1e-40 167.9 101 76.2
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 1.6e-39 166.0 100 79.0
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 2.0e-39 165.6 100 71.0
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 1.7e-38 162.5 101 69.3
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 2.5e-37 158.7 104 69.2
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 1.2e-36 156.4 101 66.3
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.6e-36 156.0 106 74.5
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 1.4e-35 152.9 102 69.6
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 1.8e-35 152.5 83 80.7
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 2.3e-35 152.1 103 68.9
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 2.3e-35 152.1 101 65.3
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 3.0e-35 151.8 106 71.7
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 4.0e-35 151.4 103 68.0
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.7e-33 146.0 99 63.6
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 2.2e-33 145.6 100 69.0
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.1e-32 143.3 101 58.4
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 1.1e-32 143.3 89 76.4
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 1.4e-32 142.9 88 76.1
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 5.4e-32 141.0 99 62.6
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 1.0e-27 126.7 71 80.3
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 1.4e-27 126.3 100 59.0
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 3.1e-27 125.2 72 79.2
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 6.8e-27 124.0 72 81.9
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 5.8e-26 120.9 91 69.2
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 2.2e-25 119.0 71 78.9
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 3.2e-24 115.2 96 52.1
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 3.5e-23 111.7 95 55.8
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 2.5e-21 105.5 71 62.0
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 4.7e-20 101.3 142 42.3
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 8.9e-19 97.1 59 78.0
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 4.4e-18 94.7 52 86.5
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 6.4e-17 90.9 53 71.7
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 1.1e-16 90.1 65 66.2
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.9e-16 89.4 72 56.9
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 3.2e-16 88.6 51 74.5
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 8.1e-12 73.9 35 88.6
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 3.1e-11 72.0 96 38.5
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 3.1e-11 72.0 95 40.0
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 4.0e-11 71.6 106 42.5
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 1.3e-09 66.6 39 74.4
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 3.2e-08 62.0 33 78.8
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 1.0e-06 57.0 32 81.2
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 1.3e-06 56.6 32 75.0


User provided reference genes

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