Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400032191 Solanum tuberosum HOM05D006265 ORTHO05D007822 1.7e-45 185.7 96 100.0
PGSC0003DMG400032140 Solanum tuberosum HOM05D006265 ORTHO05D007822 3.4e-25 118.2 120 60.8
Solyc01g006010.3 Solanum lycopersicum HOM05D006265 ORTHO05D007822 1.3e-24 116.3 120 59.2
Sopen01g002020 Solanum pennellii HOM05D006265 ORTHO05D007822 1.3e-24 116.3 120 59.2
Peaxi162Scf00100g00717 Petunia axillaris HOM05D006265 ORTHO05D007822 1.2e-22 109.8 120 56.7
Nitab4.5_0011368g0010 Nicotiana tabacum HOM05D006265 ORTHO05D007822 2.7e-22 108.6 112 58.0
CAN.G158.5 Capsicum annuum HOM05D006265 ORTHO05D007822 9.9e-17 90.1 120 50.8
Cc01_g01630 Coffea canephora HOM05D006265 ORTHO05D007822 1.2e-14 83.2 120 45.8
Actinidia39362 Actinidia chinensis HOM05D006265 ORTHO05D007822 1.6e-14 82.8 120 43.3
unitig_8.g3597 Utricularia gibba HOM05D006265 ORTHO05D007822 2.7e-14 82.0 75 54.7
DCAR_001991 Daucus carota HOM05D006265 ORTHO05D007822 4.6e-14 81.3 121 44.6
Oeu029371.1 Olea europaea HOM05D006265 ORTHO05D007822 6.0e-14 80.9 121 43.8
Actinidia06291 Actinidia chinensis HOM05D006265 ORTHO05D007822 7.8e-14 80.5 120 42.5
Dinv09750 Davidia involucrata HOM05D006265 ORTHO05D007822 3.9e-13 78.2 120 41.7
MSTRG.18861 Avicennia marina HOM05D006265 ORTHO05D007822 5.1e-13 77.8 119 41.2
Oeu023936.1 Olea europaea HOM05D006265 ORTHO05D007822 5.1e-13 77.8 121 42.1
Nn2g15777 Nelumbo nucifera HOM05D006265 ORTHO05D007822 1.1e-12 76.6 120 43.3
GSVIVG01025406001 Vitis vinifera HOM05D006265 ORTHO05D007822 1.5e-12 76.3 118 40.7
Aqoxy1G00067 Aquilegia oxysepala HOM05D006265 ORTHO05D007822 1.9e-12 75.9 116 44.0
vmacro22565 Vaccinium macrocarpon HOM05D006265 ORTHO05D007822 1.9e-12 75.9 117 43.6
Migut.D02531 Erythranthe guttata HOM05D006265 ORTHO05D007822 4.3e-12 74.7 119 37.8
Lsat_1_v5_gn_6_52400 Lactuca sativa HOM05D006265 ORTHO05D007822 7.3e-12 73.9 126 37.3
CSS0049900 Camellia sinensis var. sinensis HOM05D006265 ORTHO05D007822 1.2e-11 73.2 120 40.8
SGA_v2.0_scaffold18G08319 Striga asiatica HOM05D006265 ORTHO05D007822 1.2e-11 73.2 121 38.0
Lj2C715T2 Lonicera japonica HOM05D006265 ORTHO05D007822 8.1e-11 70.5 118 39.0
Prupe.6G010100 Prunus persica HOM05D006265 ORTHO05D007822 1.4e-10 69.7 86 46.5
ATR0598G286 Amborella trichopoda HOM05D006265 ORTHO05D007822 2.4e-10 68.9 120 36.7
MBI13_g29632_MAGBIO Magnolia biondii HOM05D006265 ORTHO05D007822 4.0e-10 68.2 116 38.8
PSO017G3167 Papaver somniferum HOM05D006265 ORTHO05D007822 5.2e-10 67.8 114 40.4
TWI60G0389 Tripterygium wilfordii HOM05D006265 ORTHO05D007822 6.8e-10 67.4 116 39.7
Cfa009611 Carpinus fangiana HOM05D006265 ORTHO05D007822 8.9e-10 67.0 113 38.9
Haze_22984 Corylus avellana HOM05D006265 ORTHO05D007822 8.9e-10 67.0 113 38.9
QL01p007989 Quercus lobata HOM05D006265 ORTHO05D007822 8.9e-10 67.0 116 36.2
HPP92_025714 Vanilla planifolia HOM05D006265 ORTHO05D007822 8.9e-10 67.0 116 37.9
PSO170G6775 Papaver somniferum HOM05D006265 ORTHO05D007822 1.2e-09 66.6 114 42.1
Glyma.18G001100 Glycine max HOM05D006265 ORTHO05D007822 1.5e-09 66.2 111 39.6
CiPaw.13G173200 Carya illinoinensis HOM05D006265 ORTHO05D007822 2.6e-09 65.5 116 37.1
Thecc.09G212900 Theobroma cacao HOM05D006265 ORTHO05D007822 2.6e-09 65.5 118 39.8
Glyma.11G256000 Glycine max HOM05D006265 ORTHO05D007822 3.4e-09 65.1 111 38.7
Manes.15G105700 Manihot esculenta HOM05D006265 ORTHO05D007822 3.4e-09 65.1 116 39.7
HPP92_025756 Vanilla planifolia HOM05D006265 ORTHO05D007822 3.4e-09 65.1 116 37.1
Atru.chr3.2261 Acer truncatum HOM05D006265 ORTHO05D007822 4.4e-09 64.7 115 39.1
Atru.chr3.2267 Acer truncatum HOM05D006265 ORTHO05D007822 4.4e-09 64.7 115 39.1
HanXRQChr02g0056581 Helianthus annuus HOM05D006265 ORTHO05D007822 4.4e-09 64.7 121 38.0
Lj6g0010790 Lotus japonicus HOM05D006265 ORTHO05D007822 4.4e-09 64.7 111 37.8
Gohir.A08G011700 Gossypium hirsutum HOM05D006265 ORTHO05D007822 7.6e-09 63.9 116 38.8
Gohir.D08G022200 Gossypium hirsutum HOM05D006265 ORTHO05D007822 7.6e-09 63.9 116 38.8
Gorai.004G017500 Gossypium raimondii HOM05D006265 ORTHO05D007822 7.6e-09 63.9 116 38.8
RcHm_v2.0_Chr5g0081541 Rosa chinensis HOM05D006265 ORTHO05D007822 7.6e-09 63.9 116 39.7
FvH4_3g44840 Fragaria vesca HOM05D006265 ORTHO05D007822 9.9e-09 63.5 116 39.7
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 9.9e-09 63.5 116 39.7
Lalb_Chr11g0075951 Lupinus albus HOM05D006265 ORTHO05D007822 9.9e-09 63.5 124 34.7
Phvul.001G268200 Phaseolus vulgaris HOM05D006265 ORTHO05D007822 9.9e-09 63.5 111 36.9
COL.COLO4_34991 Corchorus olitorius HOM05D006265 ORTHO05D007822 1.7e-08 62.8 116 37.1
FAN16G3355 Fragaria x ananassa HOM05D006265 ORTHO05D007822 1.7e-08 62.8 116 38.8
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.7e-08 62.8 116 37.9
Psat5g103200 Pisum sativum HOM05D006265 ORTHO05D007822 1.7e-08 62.8 118 33.9
Ciclev10014343m.g Citrus clementina HOM05D006265 ORTHO05D007822 2.2e-08 62.4 115 37.4
VMungo1383G2426 Vigna mungo HOM05D006265 ORTHO05D007822 2.2e-08 62.4 111 37.8
Ca_16390_v3 Cicer arietinum L. HOM05D006265 ORTHO05D007822 3.8e-08 61.6 111 35.1
Ca_29696_v3 Cicer arietinum L. HOM05D006265 ORTHO05D007822 3.8e-08 61.6 111 35.1
Duzib168G1214 Durio zibethinus HOM05D006265 ORTHO05D007822 3.8e-08 61.6 116 37.9
ECA233G5869 Erigeron canadensis HOM05D006265 ORTHO05D007822 4.9e-08 61.2 114 38.6
Medtr3g083770 Medicago truncatula HOM05D006265 ORTHO05D007822 4.9e-08 61.2 111 34.2
FAN25G3608 Fragaria x ananassa HOM05D006265 ORTHO05D007822 6.4e-08 60.8 116 37.9
MD03G1010200 Malus domestica HOM05D006265 ORTHO05D007822 6.4e-08 60.8 116 36.2
THA.LOC104811062 Tarenaya hassleriana HOM05D006265 ORTHO05D007822 6.4e-08 60.8 115 33.9
MD03G1009900 Malus domestica HOM05D006265 ORTHO05D007822 8.4e-08 60.5 116 36.2
Aa31sc13G30 Aethionema arabicum HOM05D006265 ORTHO05D007822 1.1e-07 60.1 115 34.8
arahy.Tifrunner.gnm1.ann1.L83JF4 Arachis hypogaea HOM05D006265 ORTHO05D007822 1.4e-07 59.7 111 34.2
SalBow6G4223 Salvia bowleyana HOM05D006265 ORTHO05D007822 1.4e-07 59.7 147 30.6
Potri.001G008700 Populus trichocarpa HOM05D006265 ORTHO05D007822 1.9e-07 59.3 116 37.1
vmacro04214 Vaccinium macrocarpon HOM05D006265 ORTHO05D007822 2.4e-07 58.9 161 31.7
EL10Ac4g10351 Beta vulgaris HOM05D006265 ORTHO05D007822 4.2e-07 58.2 120 35.0
CANSAT80G0616 Cannabis sativa HOM05D006265 ORTHO05D007822 4.2e-07 58.2 116 34.5
Mapoly0033s0137 Marchantia polymorpha HOM05D006265 ORTHO05D003586 4.2e-07 58.2 120 35.0
Pp3c20_6220 Physcomitrium patens HOM05D003145 ORTHO05D003586 4.2e-07 58.2 114 35.1
CBR_g16071 Chara braunii HOM05D006265 ORTHO05D003586 5.4e-07 57.8 123 35.0
MELO3C014671.2 Cucumis melo HOM05D006265 ORTHO05D007822 5.4e-07 57.8 116 33.6
CsaV3_4G023450 Cucumis sativus L. HOM05D006265 ORTHO05D007822 5.4e-07 57.8 116 33.6
PGR042G3578 Punica granatum HOM05D006265 ORTHO05D007822 5.4e-07 57.8 115 33.9
Ah.06g193040 Amaranthus hybridus HOM05D006265 ORTHO05D007822 7.1e-07 57.4 116 34.5
arahy.Tifrunner.gnm1.ann1.BC49LP Arachis hypogaea HOM05D006265 ORTHO05D007822 7.1e-07 57.4 111 33.3
CDE04G0145 Ceratophyllum demersum HOM05D006265 ORTHO05D007822 9.3e-07 57.0 113 36.3
Potri.003G216800 Populus trichocarpa HOM05D006265 ORTHO05D007822 1.2e-06 56.6 134 34.3
Rhsim13G0230200 Rhododendron simsii HOM05D006265 ORTHO05D007822 1.2e-06 56.6 46 60.9
TPR.G22747 Trifolium pratense HOM05D006265 ORTHO05D007822 1.2e-06 56.6 111 32.4
Eucgr.J01792 Eucalyptus grandis HOM05D006265 ORTHO05D007822 1.6e-06 56.2 130 35.4
AL5G20540 Arabidopsis lyrata HOM05D006265 ORTHO05D007822 2.1e-06 55.8 115 33.0
A06p39550 Brassica napus HOM05D006265 ORTHO05D007822 2.1e-06 55.8 115 33.9
C07p38720 Brassica napus HOM05D006265 ORTHO05D007822 2.7e-06 55.5 115 33.9
Thhalv10003817m.g Eutrema salsugineum HOM05D006265 ORTHO05D007822 2.7e-06 55.5 130 32.3
BolC7t44392H Brassica oleracea HOM05D006265 ORTHO05D007822 3.5e-06 55.1 115 33.0
Hund21646 Selenicereus undatus HOM05D006265 ORTHO05D007822 4.6e-06 54.7 114 31.6
Sabra03G0161900 Salix brachista HOM05D006265 ORTHO05D007822 6.0e-06 54.3 116 35.3
AT3G32940 Arabidopsis thaliana HOM05D006265 ORTHO05D007822 7.8e-06 53.9 115 32.2
Sed0014267 Sechium edule HOM05D006265 ORTHO05D007822 7.8e-06 53.9 121 30.6


User provided reference genes

Program Settings