Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400031876 Solanum tuberosum HOM05D003074 ORTHO05D002434 1.9e-50 202.2 102 100.0
PGSC0003DMG400032292 Solanum tuberosum HOM05D003074 ORTHO05D002434 1.8e-48 195.7 102 98.0
PGSC0003DMG400029820 Solanum tuberosum HOM05D003074 ORTHO05D002434 2.9e-43 178.3 102 90.2
PGSC0003DMG400001089 Solanum tuberosum HOM05D003074 ORTHO05D002434 7.5e-23 110.5 118 57.6
Nitab4.5_0009995g0010 Nicotiana tabacum HOM05D003074 ORTHO05D002434 4.9e-22 107.8 96 64.6
Peaxi162Scf01097g00039 Petunia axillaris HOM05D003074 ORTHO05D002434 1.2e-20 103.2 109 57.8
TAR626G1667 Trochodendron aralioides HOM05D003074 ORTHO05D002434 5.6e-18 94.4 126 48.4
Haze_09674 Corylus avellana HOM05D003074 ORTHO05D002434 1.2e-17 93.2 120 46.7
Oeu007582.1 Olea europaea HOM05D003074 ORTHO05D002434 1.2e-17 93.2 107 51.4
Thecc.07G037400 Theobroma cacao HOM05D003074 ORTHO05D002434 2.1e-17 92.4 84 57.1
RhsimUnG0250800 Rhododendron simsii HOM05D003074 ORTHO05D002434 3.6e-17 91.7 65 72.3
Cfa020350 Carpinus fangiana HOM05D003074 ORTHO05D002434 6.1e-17 90.9 118 46.6
TWI38G1886 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 8.0e-17 90.5 119 47.1
TAR624G1270 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.0e-16 90.1 119 48.7
CiPaw.12G129500 Carya illinoinensis HOM05D003074 ORTHO05D002434 6.8e-16 87.4 65 69.2
Medtr3g051510 Medicago truncatula HOM05D003074 ORTHO05D002434 6.8e-16 87.4 106 47.2
Dinv40751 Davidia involucrata HOM05D003074 ORTHO05D002434 8.9e-16 87.0 124 49.2
Dinv22264 Davidia involucrata HOM05D003074 ORTHO05D002434 1.2e-15 86.7 89 57.3
Duzib213G0915 Durio zibethinus HOM05D003074 ORTHO05D002434 1.5e-15 86.3 81 56.8
COL.COLO4_09658 Corchorus olitorius HOM05D003074 ORTHO05D002434 7.5e-15 84.0 85 56.5
Medtr3g051530 Medicago truncatula HOM05D003074 ORTHO05D002434 7.5e-15 84.0 106 48.1
Hma1.2p1_1091F.1_g255850 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 1.3e-14 83.2 58 72.4
Hma1.2p1_1222F.1_g268140 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 1.3e-14 83.2 122 44.3
Medtr3g051610 Medicago truncatula HOM05D003074 ORTHO05D002434 1.3e-14 83.2 106 46.2
Lsat_1_v5_gn_9_93960 Lactuca sativa HOM05D003074 ORTHO05D002434 1.7e-14 82.8 63 63.5
Ciclev10009680m.g Citrus clementina HOM05D003074 ORTHO05D002434 2.2e-14 82.4 124 47.6
QL08p010341 Quercus lobata HOM05D003074 ORTHO05D002434 2.9e-14 82.0 125 44.0
CiPaw.11G189000 Carya illinoinensis HOM05D003074 ORTHO05D002434 3.7e-14 81.6 91 51.6
Hma1.2p1_1162F.1_g262580 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 3.7e-14 81.6 58 70.7
Aqoxy1G02174 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 4.9e-14 81.3 123 47.2
Hma1.2p1_0673F.1_g201330 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 4.9e-14 81.3 83 54.2
Medtr3g051570 Medicago truncatula HOM05D003074 ORTHO05D002434 4.9e-14 81.3 102 46.1
Ca_01715_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 6.4e-14 80.9 103 46.6
Ca_30684_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 6.4e-14 80.9 103 46.6
TPR.G16595 Trifolium pratense HOM05D003074 ORTHO05D002434 8.3e-14 80.5 107 44.9
ECA240G4169 Erigeron canadensis HOM05D003074 ORTHO05D002434 1.1e-13 80.1 68 61.8
Cfa000232 Carpinus fangiana HOM05D003074 ORTHO05D002434 1.4e-13 79.7 127 42.5
Haze_06793 Corylus avellana HOM05D003074 ORTHO05D002434 1.4e-13 79.7 126 43.7
Gorai.002G088300 Gossypium raimondii HOM05D003074 ORTHO05D002434 1.4e-13 79.7 109 45.9
Actinidia35342 Actinidia chinensis HOM05D003074 ORTHO05D002434 1.8e-13 79.3 57 68.4
Oeu042936.1 Olea europaea HOM05D003074 ORTHO05D002434 1.8e-13 79.3 110 44.5
Atru.chr2.3399 Acer truncatum HOM05D003074 ORTHO05D002434 2.4e-13 79.0 58 69.0
Atru.chr2.3400 Acer truncatum HOM05D003074 ORTHO05D002434 4.1e-13 78.2 56 71.4
EL10Ac4g07810 Beta vulgaris HOM05D003074 ORTHO05D002434 4.1e-13 78.2 109 45.9
CSS0019776 Camellia sinensis var. sinensis HOM05D003074 ORTHO05D002434 4.1e-13 78.2 110 43.6
Glyma.08G316000 Glycine max HOM05D003074 ORTHO05D002434 4.1e-13 78.2 106 48.1
Glyma.18G096700 Glycine max HOM05D003074 ORTHO05D002434 5.4e-13 77.8 103 46.6
Gohir.D05G369300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 5.4e-13 77.8 66 65.2
Gorai.009G438000 Gossypium raimondii HOM05D003074 ORTHO05D002434 5.4e-13 77.8 66 65.2
Migut.M01767 Erythranthe guttata HOM05D003074 ORTHO05D002434 9.2e-13 77.0 68 60.3
Gohir.D01G066350 Gossypium hirsutum HOM05D003074 ORTHO05D002434 9.2e-13 77.0 77 53.2
Cc09_g09730 Coffea canephora HOM05D003074 ORTHO05D002434 1.6e-12 76.3 130 43.1
Manes.03G129100 Manihot esculenta HOM05D003074 ORTHO05D002434 1.6e-12 76.3 123 43.9
Gohir.A01G079300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 2.0e-12 75.9 109 44.0
Gohir.A04G016900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 2.0e-12 75.9 66 63.6
Duzib268G1655 Durio zibethinus HOM05D003074 ORTHO05D002434 2.7e-12 75.5 63 61.9
Phvul.006G043100 Phaseolus vulgaris HOM05D003074 ORTHO05D002434 3.5e-12 75.1 99 45.5
MD11G1218800 Malus domestica HOM05D003074 ORTHO05D002434 4.6e-12 74.7 66 60.6
PSO541G1700 Papaver somniferum HOM05D003074 ORTHO05D002434 4.6e-12 74.7 80 53.8
PSO675G3145 Papaver somniferum HOM05D003074 ORTHO05D002434 4.6e-12 74.7 80 53.8
MSTRG.6917 Avicennia marina HOM05D003074 ORTHO05D002434 6.0e-12 74.3 72 54.2
CiPaw.09G091000 Carya illinoinensis HOM05D003074 ORTHO05D002434 7.8e-12 73.9 132 41.7
Prupe.4G212400 Prunus persica HOM05D003074 ORTHO05D002434 1.0e-11 73.6 125 43.2
CDE05G1751 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 1.7e-11 72.8 80 51.2
Manes.15G072100 Manihot esculenta HOM05D003074 ORTHO05D002434 1.7e-11 72.8 120 43.3
Lj6g0015217 Lotus japonicus HOM05D003074 ORTHO05D002434 3.0e-11 72.0 103 43.7
MBI02_g07159_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 3.9e-11 71.6 82 52.4
ATR0752G060 Amborella trichopoda HOM05D003074 ORTHO05D002434 5.0e-11 71.2 113 43.4
Sed0026688 Sechium edule HOM05D003074 ORTHO05D002434 5.0e-11 71.2 111 42.3
Atru.chr10.2213 Acer truncatum HOM05D003074 ORTHO05D002434 6.6e-11 70.9 70 57.1
Aqoxy1G02178 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 6.6e-11 70.9 79 51.9
ECA246G0494 Erigeron canadensis HOM05D003074 ORTHO05D002434 6.6e-11 70.9 109 39.4
Sed0007461 Sechium edule HOM05D003074 ORTHO05D002434 6.6e-11 70.9 112 41.1
Nn1g03544 Nelumbo nucifera HOM05D003074 ORTHO05D002434 8.6e-11 70.5 107 43.0
Nitab4.5_0000653g0010 Nicotiana tabacum HOM05D003074 ORTHO05D002434 8.6e-11 70.5 93 50.5
PGR031G1144 Punica granatum HOM05D003074 ORTHO05D002434 8.6e-11 70.5 107 43.9
Sabra16G0289700 Salix brachista HOM05D003074 ORTHO05D002434 8.6e-11 70.5 112 44.6
TAR627G0593 Trochodendron aralioides HOM05D003074 ORTHO05D002434 8.6e-11 70.5 82 50.0
Nn5g29371 Nelumbo nucifera HOM05D003074 ORTHO05D002434 1.1e-10 70.1 125 40.8
Sabra11G0125300 Salix brachista HOM05D003074 ORTHO05D002434 1.1e-10 70.1 109 46.8
Cpa.g.sc97.7 Carica papaya HOM05D003074 ORTHO05D002434 1.5e-10 69.7 114 43.0
THA.LOC104817856 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 1.5e-10 69.7 123 39.8
Ah.04g165880 Amaranthus hybridus HOM05D003074 ORTHO05D002434 1.9e-10 69.3 114 40.4
CDE05G3459 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 1.9e-10 69.3 80 50.0
Lsat_1_v5_gn_5_6000 Lactuca sativa HOM05D003074 ORTHO05D002434 1.9e-10 69.3 61 60.7
Potri.011G139400 Populus trichocarpa HOM05D003074 ORTHO05D002434 2.5e-10 68.9 57 64.9
TAR624G0488 Trochodendron aralioides HOM05D003074 ORTHO05D002434 2.5e-10 68.9 97 42.3
Glyma.02G290900 Glycine max HOM05D003074 ORTHO05D002434 3.3e-10 68.6 102 44.1
Dinv13888 Davidia involucrata HOM05D003074 ORTHO05D002434 4.3e-10 68.2 61 59.0
Manes.16G007700 Manihot esculenta HOM05D003074 ORTHO05D002434 4.3e-10 68.2 86 48.8
Lalb_Chr15g0081141 Lupinus albus HOM05D003074 ORTHO05D002434 5.6e-10 67.8 60 58.3
MBI02_g07158_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 5.6e-10 67.8 74 50.0
Potri.004G015900 Populus trichocarpa HOM05D003074 ORTHO05D002434 5.6e-10 67.8 67 50.7
CDE02G3016 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 7.3e-10 67.4 75 49.3
AUR62015772 Chenopodium quinoa HOM05D003074 ORTHO05D002434 7.3e-10 67.4 113 45.1
EL10Ac4g07811 Beta vulgaris HOM05D003074 ORTHO05D002434 9.5e-10 67.0 112 42.0
Eucgr.F03465 Eucalyptus grandis HOM05D003074 ORTHO05D002434 9.5e-10 67.0 131 38.9
Phvul.008G267000 Phaseolus vulgaris HOM05D003074 ORTHO05D002434 9.5e-10 67.0 100 40.0
MELO3C025367.2 Cucumis melo HOM05D003074 ORTHO05D002434 1.2e-09 66.6 107 40.2
Solyc12g005000.1 Solanum lycopersicum HOM05D003074 ORTHO05D002434 1.2e-09 66.6 102 51.0
ClCG05G014310 Citrullus lanatus HOM05D003074 ORTHO05D002434 1.6e-09 66.2 66 54.5
MBI18_g22612_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 1.6e-09 66.2 115 38.3
Sabra11G0125400 Salix brachista HOM05D003074 ORTHO05D002434 1.6e-09 66.2 66 59.1
Rhsim13G0146000 Rhododendron simsii HOM05D002761 ORTHO05D003351 2.1e-09 65.9 80 50.0
RhsimUnG0109700 Rhododendron simsii HOM05D003074 ORTHO05D002434 2.1e-09 65.9 80 50.0
TPR.G34803 Trifolium pratense HOM05D003074 ORTHO05D002434 2.1e-09 65.9 53 62.3
Lalb_Chr04g0248431 Lupinus albus HOM05D003074 ORTHO05D002434 3.6e-09 65.1 104 40.4
CiPaw.10G070500 Carya illinoinensis HOM05D003074 ORTHO05D002434 4.7e-09 64.7 71 52.1
AUR62015773 Chenopodium quinoa HOM05D003074 ORTHO05D002434 4.7e-09 64.7 87 42.5
AUR62020443 Chenopodium quinoa HOM05D003074 ORTHO05D002434 4.7e-09 64.7 119 38.7
LjContig00272g0022666 Lotus japonicus HOM05D003074 ORTHO05D002434 4.7e-09 64.7 57 57.9
AUR62020442 Chenopodium quinoa HOM05D003074 ORTHO05D002434 6.2e-09 64.3 115 41.7
PGR004G0474 Punica granatum HOM05D003074 ORTHO05D002434 6.2e-09 64.3 60 58.3
Sabra04G0008200 Salix brachista HOM05D003074 ORTHO05D002434 6.2e-09 64.3 67 46.3
MELO3C025368.2 Cucumis melo HOM05D003074 ORTHO05D002434 8.0e-09 63.9 118 33.9
Duzib192G0001 Durio zibethinus HOM05D003074 ORTHO05D002434 8.0e-09 63.9 113 39.8
Thecc.06G219600 Theobroma cacao HOM05D003074 ORTHO05D002434 8.0e-09 63.9 87 43.7
Manes.17G038600 Manihot esculenta HOM05D003074 ORTHO05D002434 1.1e-08 63.5 117 35.9
Oeu063916.1 Olea europaea HOM05D003074 ORTHO05D002434 1.1e-08 63.5 106 37.7
DCAR_004216 Daucus carota HOM05D003074 ORTHO05D002434 1.4e-08 63.2 120 41.7
Duzib235G0239 Durio zibethinus HOM05D003074 ORTHO05D002434 1.4e-08 63.2 116 42.2
PGSC0003DMG400019879 Solanum tuberosum HOM05D003074 ORTHO05D002434 1.4e-08 63.2 103 37.9
TWI38G1232 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 1.4e-08 63.2 129 40.3
vmacro03644 Vaccinium macrocarpon HOM05D003074 ORTHO05D002434 1.4e-08 63.2 115 37.4
Eucgr.D01318 Eucalyptus grandis HOM05D003074 ORTHO05D002434 1.8e-08 62.8 119 39.5
Eucgr.E04061 Eucalyptus grandis HOM05D003074 ORTHO05D002434 1.8e-08 62.8 114 38.6
Nitab4.5_0009995g0020 Nicotiana tabacum HOM05D003074 ORTHO05D002434 1.8e-08 62.8 95 47.4
MBI02_g40709_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 2.3e-08 62.4 58 56.9
Cc05_g13710 Coffea canephora HOM05D003074 ORTHO05D002434 4.0e-08 61.6 65 58.5
Gorai.009G178200 Gossypium raimondii HOM05D003074 ORTHO05D002434 4.0e-08 61.6 119 40.3
Potri.001G435400 Populus trichocarpa HOM05D003074 ORTHO05D002434 4.0e-08 61.6 111 41.4
Sopen12g001010 Solanum pennellii HOM05D003074 ORTHO05D002434 5.2e-08 61.2 57 68.4
arahy.Tifrunner.gnm1.ann1.22WBGR Arachis hypogaea HOM05D003074 ORTHO05D002434 6.8e-08 60.8 101 40.6
DCAR_008152 Daucus carota HOM05D003074 ORTHO05D002434 6.8e-08 60.8 118 39.8
Rhsim06G0216700 Rhododendron simsii HOM05D003074 ORTHO05D002434 6.8e-08 60.8 84 45.2
arahy.Tifrunner.gnm1.ann1.B0CFPV Arachis hypogaea HOM05D003074 ORTHO05D002434 8.9e-08 60.5 105 41.0
ClCG10G005340 Citrullus lanatus HOM05D003074 ORTHO05D002434 8.9e-08 60.5 105 37.1
Eucgr.E04063 Eucalyptus grandis HOM05D003074 ORTHO05D002434 8.9e-08 60.5 114 38.6
AUR62020444 Chenopodium quinoa HOM05D003074 ORTHO05D002434 1.2e-07 60.1 113 38.9
QL05p073377 Quercus lobata HOM05D003074 ORTHO05D002434 1.2e-07 60.1 84 47.6
FvH4_3g22640 Fragaria vesca HOM05D003074 ORTHO05D002434 1.5e-07 59.7 64 54.7
FAN11G2929 Fragaria x ananassa HOM05D003074 ORTHO05D002434 1.5e-07 59.7 64 54.7
CDE05G0485 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 2.0e-07 59.3 114 34.2
AUR62015774 Chenopodium quinoa HOM05D003074 ORTHO05D002434 2.0e-07 59.3 113 38.1
FAN16G0504 Fragaria x ananassa HOM05D003074 ORTHO05D002434 2.0e-07 59.3 64 54.7
FAN25G2410 Fragaria x ananassa HOM05D003074 ORTHO05D002434 2.0e-07 59.3 64 54.7
Sed0010919 Sechium edule HOM05D003074 ORTHO05D002434 2.0e-07 59.3 78 47.4
Cc09_g01730 Coffea canephora HOM05D003074 ORTHO05D002434 2.6e-07 58.9 69 49.3
FAN21G2959 Fragaria x ananassa HOM05D003074 ORTHO05D002434 2.6e-07 58.9 65 53.8
RcHm_v2.0_Chr5g0039411 Rosa chinensis HOM05D003074 ORTHO05D002434 3.4e-07 58.5 64 54.7
Sc03g0008600 Simmondsia chinensis HOM05D003074 ORTHO05D002434 7.5e-07 57.4 60 51.7
Gohir.A05G169900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 9.8e-07 57.0 120 38.3
Lalb_Chr15g0087561 Lupinus albus HOM05D008677 ORTHO05D002434 9.8e-07 57.0 118 36.4
ClCG03G004770 Citrullus lanatus HOM05D003074 ORTHO05D002434 1.3e-06 56.6 56 50.0
Eucgr.E04062 Eucalyptus grandis HOM05D003074 ORTHO05D002434 1.7e-06 56.2 118 36.4
Sed0005061 Sechium edule HOM05D003074 ORTHO05D002434 1.7e-06 56.2 62 48.4
Gohir.D05G173050 Gossypium hirsutum HOM05D003074 ORTHO05D002434 2.2e-06 55.8 119 39.5
Sc16g0006080 Simmondsia chinensis HOM05D003074 ORTHO05D002434 2.2e-06 55.8 111 38.7
Sopen02g011120 Solanum pennellii HOM05D003074 ORTHO05D002434 2.2e-06 55.8 103 35.9
Aqoxy1G02175 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 3.7e-06 55.1 115 33.0
Aqoxy1G02176 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 3.7e-06 55.1 78 38.5
Eucgr.E04066 Eucalyptus grandis HOM05D003074 ORTHO05D002434 3.7e-06 55.1 111 36.9
CsaV3_3G005050 Cucumis sativus L. HOM05D003074 ORTHO05D002434 4.9e-06 54.7 58 51.7
Eucgr.E04060 Eucalyptus grandis HOM05D003074 ORTHO05D002434 4.9e-06 54.7 118 34.7
THA.LOC104812967 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 4.9e-06 54.7 75 45.3
CsaV3_1G010810 Cucumis sativus L. HOM05D003074 ORTHO05D002434 6.4e-06 54.3 55 50.9
Medtr5g092710 Medicago truncatula HOM05D003074 ORTHO05D002434 6.4e-06 54.3 100 37.0
Eucgr.E04064 Eucalyptus grandis HOM05D003074 ORTHO05D002434 8.3e-06 53.9 108 37.0


User provided reference genes

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