Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400031764 Solanum tuberosum HOM05D007882 ORTHO05D009870 5.5e-86 320.9 153 100.0
Solyc02g077700.1 Solanum lycopersicum HOM05D007882 ORTHO05D009870 1.2e-80 303.1 153 92.8
CAN.G529.52 Capsicum annuum HOM05D007882 ORTHO05D009870 3.6e-61 238.4 150 73.3
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 5.0e-55 218.0 150 68.7
Prupe.4G052300 Prunus persica HOM05D007882 ORTHO05D009870 1.4e-52 209.9 148 62.2
Atru.chr10.1801 Acer truncatum HOM05D007882 ORTHO05D009870 1.2e-51 206.8 150 63.3
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 4.4e-51 204.9 148 62.8
CSS0041544 Camellia sinensis var. sinensis HOM05D007882 ORTHO05D009870 5.7e-51 204.5 149 60.4
Potri.004G048400 Populus trichocarpa HOM05D007882 ORTHO05D009870 5.7e-51 204.5 149 62.4
Cfa000524 Carpinus fangiana HOM05D007882 ORTHO05D009870 2.2e-50 202.6 148 62.2
CiPaw.10G052500 Carya illinoinensis HOM05D007882 ORTHO05D009870 3.7e-50 201.8 151 58.9
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 8.3e-50 200.7 149 61.7
TWI38G0780 Tripterygium wilfordii HOM05D007882 ORTHO05D009870 8.3e-50 200.7 150 60.7
Manes.17G049100 Manihot esculenta HOM05D007882 ORTHO05D009870 1.1e-49 200.3 149 60.4
QL05p042203 Quercus lobata HOM05D007882 ORTHO05D009870 1.8e-49 199.5 151 60.3
Nitab4.5_0001955g0180 Nicotiana tabacum HOM05D007882 ORTHO05D009870 3.1e-49 198.7 112 80.4
Manes.16G031800 Manihot esculenta HOM05D007882 ORTHO05D009870 7.0e-49 197.6 149 59.1
Duzib235G1325 Durio zibethinus HOM05D007882 ORTHO05D009870 9.1e-49 197.2 150 58.0
TPR.G789 Trifolium pratense HOM05D007882 ORTHO05D009870 2.0e-48 196.1 147 61.2
Rhsim02G0134400 Rhododendron simsii HOM05D007882 ORTHO05D009870 5.9e-48 194.5 146 58.9
RcHm_v2.0_Chr5g0009121 Rosa chinensis HOM05D007882 ORTHO05D009870 1.7e-47 193.0 147 59.9
Ciclev10017073m.g Citrus clementina HOM05D007882 ORTHO05D009870 2.2e-47 192.6 147 55.8
COL.COLO4_31420 Corchorus olitorius HOM05D007882 ORTHO05D009870 2.2e-47 192.6 150 58.0
FvH4_3g08670 Fragaria vesca HOM05D007882 ORTHO05D009870 2.9e-47 192.2 146 59.6
Oeu012151.1 Olea europaea HOM05D007882 ORTHO05D009870 3.8e-47 191.8 148 56.8
Cc02_g13810 Coffea canephora HOM05D007882 ORTHO05D009870 5.0e-47 191.4 147 57.8
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 1.1e-46 190.3 146 58.9
MD10G1289500 Malus domestica HOM05D007882 ORTHO05D009870 1.1e-46 190.3 146 57.5
FAN16G0532 Fragaria x ananassa HOM05D007882 ORTHO05D009870 1.9e-46 189.5 146 58.2
CANSAT35G1953 Cannabis sativa HOM05D007882 ORTHO05D009870 2.5e-46 189.1 149 58.4
FAN11G2645 Fragaria x ananassa HOM05D007882 ORTHO05D009870 2.5e-46 189.1 146 58.2
Medtr2g014430 Medicago truncatula HOM05D007882 ORTHO05D009870 3.2e-46 188.7 147 58.5
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 4.2e-46 188.3 125 66.4
Thecc.06G181400 Theobroma cacao HOM05D007882 ORTHO05D009870 4.2e-46 188.3 150 55.3
Psat1g202760 Pisum sativum HOM05D007882 ORTHO05D009870 5.5e-46 188.0 147 57.8
Gohir.A05G159200 Gossypium hirsutum HOM05D007882 ORTHO05D009870 7.2e-46 187.6 150 54.7
Gorai.009G166900 Gossypium raimondii HOM05D007882 ORTHO05D009870 7.2e-46 187.6 150 54.7
TAR627G1093 Trochodendron aralioides HOM05D007882 ORTHO05D009870 7.2e-46 187.6 147 57.1
arahy.Tifrunner.gnm1.ann1.CPZJ30 Arachis hypogaea HOM05D007882 ORTHO05D009870 1.0e-44 183.7 149 54.4
Lj6g0021640 Lotus japonicus HOM05D007882 ORTHO05D009870 1.0e-44 183.7 147 54.4
Aqoxy4G00631 Aquilegia oxysepala HOM05D007882 ORTHO05D009870 5.2e-44 181.4 149 54.4
Nn1g06425 Nelumbo nucifera HOM05D007882 ORTHO05D009870 1.5e-43 179.9 152 53.9
Glyma.13G235900 Glycine max HOM05D007882 ORTHO05D009870 5.7e-43 177.9 146 56.2
Aa31LG9G13760 Aethionema arabicum HOM05D007882 ORTHO05D009870 1.3e-42 176.8 146 52.7
ClCG00G004760 Citrullus lanatus HOM05D007882 ORTHO05D009870 4.9e-42 174.9 150 53.3
ClCG01G023240 Citrullus lanatus HOM05D007882 ORTHO05D009870 4.9e-42 174.9 150 53.3
Gohir.D05G161900 Gossypium hirsutum HOM05D007882 ORTHO05D009870 4.9e-42 174.9 144 53.5
Lalb_Chr18g0059401 Lupinus albus HOM05D007882 ORTHO05D009870 8.3e-42 174.1 148 52.7
SalBow8G2967 Salvia bowleyana HOM05D007882 ORTHO05D009870 8.3e-42 174.1 147 53.1
SalBow8G3626 Salvia bowleyana HOM05D007882 ORTHO05D009870 8.3e-42 174.1 147 53.1
PSO210G4689 Papaver somniferum HOM05D007882 ORTHO05D009870 1.8e-41 172.9 152 52.6
MELO3C007262.2 Cucumis melo HOM05D007882 ORTHO05D009870 2.4e-41 172.6 150 52.0
Thhalv10017644m.g Eutrema salsugineum HOM05D007882 ORTHO05D009870 2.4e-41 172.6 146 54.8
PSO210G1466 Papaver somniferum HOM05D007882 ORTHO05D009870 4.1e-41 171.8 152 53.3
BolC4t27817H Brassica oleracea HOM05D007882 ORTHO05D009870 5.4e-41 171.4 147 55.1
Eucgr.D00598 Eucalyptus grandis HOM05D007882 ORTHO05D009870 5.4e-41 171.4 148 49.3
Sp4g16270 Schrenkiella parvula HOM05D007882 ORTHO05D009870 5.4e-41 171.4 147 54.4
C04p63420 Brassica napus HOM05D007882 ORTHO05D009870 1.6e-40 169.9 147 54.4
Migut.M01110 Erythranthe guttata HOM05D007882 ORTHO05D009870 3.5e-40 168.7 149 50.3
THA.LOC104820567 Tarenaya hassleriana HOM05D007882 ORTHO05D009870 3.5e-40 168.7 146 52.7
unitig_22.g6219 Utricularia gibba HOM05D007882 ORTHO05D009870 3.5e-40 168.7 145 54.5
A04p26080 Brassica napus HOM05D007882 ORTHO05D009870 5.9e-40 167.9 147 53.7
BraA04t18110Z Brassica rapa HOM05D007882 ORTHO05D009870 5.9e-40 167.9 147 53.7
Phvul.006G182500 Phaseolus vulgaris HOM05D007882 ORTHO05D009870 7.7e-40 167.5 147 51.7
PGR004G2459 Punica granatum HOM05D007882 ORTHO05D009870 1.3e-39 166.8 148 50.0
SGA_v2.0_scaffold22G09668 Striga asiatica HOM05D007882 ORTHO05D009870 1.3e-39 166.8 147 50.3
CsaV3_6G050400 Cucumis sativus L. HOM05D007882 ORTHO05D009870 1.1e-38 163.7 122 59.8
CARHR128020 Cardamine hirsuta HOM05D007882 ORTHO05D009870 2.5e-38 162.5 146 50.7
AL4G29660 Arabidopsis lyrata HOM05D007882 ORTHO05D009870 4.3e-38 161.8 146 50.7
Sed0022369 Sechium edule HOM05D007882 ORTHO05D009870 5.6e-38 161.4 150 50.7
HanXRQChr01g0014401 Helianthus annuus HOM05D007882 ORTHO05D009870 6.1e-37 157.9 148 50.0
AT2G33855 Arabidopsis thaliana HOM05D007882 ORTHO05D009870 8.0e-37 157.5 146 50.7
DCAR_028056 Daucus carota HOM05D007882 ORTHO05D009870 2.3e-36 156.0 148 53.4
Carub.0004s1556 Capsella rubella HOM05D007882 ORTHO05D009870 6.8e-36 154.5 146 48.6
ATR0789G148 Amborella trichopoda HOM05D007882 ORTHO05D009870 1.5e-35 153.3 148 48.0
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 7.0e-33 144.4 119 54.6
Ah.14g089690 Amaranthus hybridus HOM05D007882 ORTHO05D009870 4.6e-32 141.7 119 55.5
Nn1g04229 Nelumbo nucifera HOM05D007882 ORTHO05D009870 6.8e-28 127.9 100 60.0
MBI04_g06226_MAGBIO Magnolia biondii HOM05D007882 ORTHO05D009870 2.9e-26 122.5 155 40.6
HPP92_022798 Vanilla planifolia HOM05D007882 ORTHO05D009870 2.9e-26 122.5 147 40.8
QL06p028733 Quercus lobata HOM05D007882 ORTHO05D009870 1.7e-23 113.2 98 58.2
Os04g0475300 Oryza sativa ssp. japonica HOM05D007882 ORTHO05D009870 5.8e-19 98.2 151 35.1
Zm00001eb079820 Zea mays HOM05D007882 ORTHO05D009870 3.7e-18 95.5 123 38.2
Cpa.g.sc27.7 Carica papaya HOM05D007882 ORTHO05D009870 7.8e-16 87.8 51 74.5
BcaC02g07777 Brassica carinata HOM05D007882 ORTHO05D009870 8.9e-12 74.3 81 50.6
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 6.4e-10 68.2 59 47.5


User provided reference genes

Program Settings