Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400031695 Solanum tuberosum HOM05D002694 ORTHO05D002927 6.3e-35 150.2 75 100.0
PGSC0003DMG400023771 Solanum tuberosum HOM05D002694 ORTHO05D002927 9.4e-15 83.2 47 91.5
Solyc01g103990.3 Solanum lycopersicum HOM05D002694 ORTHO05D002927 3.6e-14 81.3 47 91.5
Peaxi162Scf00011g00627 Petunia axillaris HOM05D002694 ORTHO05D002927 6.1e-14 80.5 47 87.2
CAN.G798.20 Capsicum annuum HOM05D002694 ORTHO05D002927 8.0e-14 80.1 47 87.2
Sopen01g046390 Solanum pennellii HOM05D002694 ORTHO05D002927 1.0e-13 79.7 47 89.4
Nitab4.5_0008546g0030 Nicotiana tabacum HOM05D002694 ORTHO05D002927 3.0e-13 78.2 47 85.1
Nitab4.5_0001744g0030 Nicotiana tabacum HOM05D002694 ORTHO05D002927 5.2e-13 77.4 47 83.0
Nn1g08357 Nelumbo nucifera HOM05D002694 ORTHO05D002927 7.0e-10 67.0 48 66.7
CSS0021439 Camellia sinensis var. sinensis HOM05D002694 ORTHO05D002927 9.1e-10 66.6 47 74.5
CSS0029367 Camellia sinensis var. sinensis HOM05D002694 ORTHO05D002927 9.1e-10 66.6 47 74.5
TWI23G0063 Tripterygium wilfordii HOM05D002694 ORTHO05D002927 9.1e-10 66.6 48 68.8
GSVIVG01022838001 Vitis vinifera HOM05D002694 ORTHO05D002927 1.2e-09 66.2 73 52.1
TWI59G0386 Tripterygium wilfordii HOM05D002694 ORTHO05D002927 3.5e-09 64.7 44 72.7
CANSAT11G2158 Cannabis sativa HOM05D002694 ORTHO05D002927 4.5e-09 64.3 47 72.3
ECA234G0155 Erigeron canadensis HOM05D002694 ORTHO05D002927 4.5e-09 64.3 47 70.2
Rhsim11G0127700 Rhododendron simsii HOM05D002694 ORTHO05D002927 4.5e-09 64.3 47 70.2
Cfa005502 Carpinus fangiana HOM05D002694 ORTHO05D002927 5.9e-09 63.9 47 70.2
Haze_01743 Corylus avellana HOM05D002694 ORTHO05D002927 5.9e-09 63.9 47 70.2
Lj9A303T74 Lonicera japonica HOM05D002694 ORTHO05D002927 5.9e-09 63.9 47 70.2
Phvul.006G216100 Phaseolus vulgaris HOM05D002694 ORTHO05D002927 7.7e-09 63.5 47 68.1
vmacro01749 Vaccinium macrocarpon HOM05D002694 ORTHO05D002927 7.7e-09 63.5 47 70.2
Actinidia00199 Actinidia chinensis HOM05D002694 ORTHO05D002927 1.0e-08 63.2 47 70.2
Cc02_g22740 Coffea canephora HOM05D002694 ORTHO05D002927 1.0e-08 63.2 47 63.8
DCAR_006697 Daucus carota HOM05D002694 ORTHO05D002927 1.0e-08 63.2 47 68.1
Lj5A254T86 Lonicera japonica HOM05D002694 ORTHO05D002927 1.0e-08 63.2 47 68.1
Potri.003G018500 Populus trichocarpa HOM05D002694 ORTHO05D002927 1.0e-08 63.2 47 68.1
Gohir.A03G193100 Gossypium hirsutum HOM05D002694 ORTHO05D002927 1.3e-08 62.8 47 68.1
Gohir.D02G214100 Gossypium hirsutum HOM05D002694 ORTHO05D002927 1.3e-08 62.8 47 68.1
Gorai.005G242000 Gossypium raimondii HOM05D002694 ORTHO05D002927 1.3e-08 62.8 47 68.1
Lsat_1_v5_gn_5_105680 Lactuca sativa HOM05D002694 ORTHO05D002927 1.3e-08 62.8 47 70.2
CSS0003662 Camellia sinensis var. sinensis HOM05D002694 ORTHO05D002927 1.7e-08 62.4 47 70.2
TWI14G0195 Tripterygium wilfordii HOM05D002694 ORTHO05D002927 1.7e-08 62.4 44 70.5
VMungo0540G2271 Vigna mungo HOM05D002694 ORTHO05D002927 1.7e-08 62.4 47 66.0
Lsat_1_v5_gn_9_121061 Lactuca sativa HOM05D002694 ORTHO05D002927 2.2e-08 62.0 47 66.0
Cfa012954 Carpinus fangiana HOM05D002694 ORTHO05D002927 2.9e-08 61.6 47 66.0
MD15G1428100 Malus domestica HOM05D002694 ORTHO05D002927 2.9e-08 61.6 47 68.1
Prupe.1G572800 Prunus persica HOM05D002694 ORTHO05D002927 2.9e-08 61.6 47 66.0
Sabra03G0010100 Salix brachista HOM05D002694 ORTHO05D002927 2.9e-08 61.6 47 66.0
TPR.G2128 Trifolium pratense HOM05D002694 ORTHO05D002927 2.9e-08 61.6 47 66.0
Haze_21323 Corylus avellana HOM05D002694 ORTHO05D002927 3.8e-08 61.2 47 66.0
HanXRQChr10g0298121 Helianthus annuus HOM05D002694 ORTHO05D002927 3.8e-08 61.2 47 68.1
Lj6g0015845 Lotus japonicus HOM05D002694 ORTHO05D002927 3.8e-08 61.2 47 63.8
Manes.07G019200 Manihot esculenta HOM05D002694 ORTHO05D002927 3.8e-08 61.2 44 70.5
RcHm_v2.0_Chr7g0221251 Rosa chinensis HOM05D002694 ORTHO05D002927 3.8e-08 61.2 47 68.1
Ciclev10000069m.g Citrus clementina HOM05D002694 ORTHO05D002927 5.0e-08 60.8 47 61.7
Glyma.08G188000 Glycine max HOM05D002694 ORTHO05D002927 5.0e-08 60.8 47 63.8
HanXRQChr16g0513871 Helianthus annuus HOM05D002694 ORTHO05D002927 5.0e-08 60.8 44 70.5
Hma1.2p1_1197F.1_g266170 Hydrangea macrophylla HOM05D002694 ORTHO05D002927 5.0e-08 60.8 47 66.0
ECA240G4585 Erigeron canadensis HOM05D002694 ORTHO05D002927 6.5e-08 60.5 42 71.4
QL02p099401 Quercus lobata HOM05D002694 ORTHO05D002927 6.5e-08 60.5 47 68.1
Sabra01G0163900 Salix brachista HOM05D002694 ORTHO05D002927 6.5e-08 60.5 47 63.8
Manes.10G122812 Manihot esculenta HOM05D002694 ORTHO05D002927 8.5e-08 60.1 47 66.0
Hund27116 Selenicereus undatus HOM05D002694 ORTHO05D002927 8.5e-08 60.1 43 69.8
TPR.G23572 Trifolium pratense HOM05D002694 ORTHO05D002927 8.5e-08 60.1 47 63.8
AT1G22930 Arabidopsis thaliana HOM05D002694 ORTHO05D002927 1.1e-07 59.7 44 68.2
Lalb_Chr20g0123581 Lupinus albus HOM05D002694 ORTHO05D002927 1.1e-07 59.7 47 66.0
MD08G1236100 Malus domestica HOM05D002694 ORTHO05D002927 1.1e-07 59.7 47 66.0
TAR376G1030 Trochodendron aralioides HOM05D002694 ORTHO05D002927 1.1e-07 59.7 47 63.8
Atru.chr3.1571 Acer truncatum HOM05D002694 ORTHO05D002927 1.5e-07 59.3 47 63.8
Atru.chr3.1590 Acer truncatum HOM05D002694 ORTHO05D002927 1.5e-07 59.3 47 63.8
AL1G36490 Arabidopsis lyrata HOM05D002694 ORTHO05D002927 1.5e-07 59.3 47 66.0
Medtr2g006520 Medicago truncatula HOM05D002694 ORTHO05D002927 1.5e-07 59.3 47 61.7
PSO170G3020 Papaver somniferum HOM05D002694 ORTHO05D002927 1.5e-07 59.3 47 59.6
PSO782G4887 Papaver somniferum HOM05D002694 ORTHO05D002927 1.5e-07 59.3 47 59.6
PSO832G0833 Papaver somniferum HOM05D002694 ORTHO05D002927 1.5e-07 59.3 48 58.3
Potri.004G217800 Populus trichocarpa HOM05D002694 ORTHO05D002927 1.5e-07 59.3 47 61.7
PGR142G3862 Punica granatum HOM05D002694 ORTHO05D002927 1.5e-07 59.3 47 66.0
MSTRG.27847 Avicennia marina HOM05D002694 ORTHO05D002927 1.9e-07 58.9 47 57.4
FAN04G2388 Fragaria x ananassa HOM05D002694 ORTHO05D002927 1.9e-07 58.9 47 66.0
FAN08G2300 Fragaria x ananassa HOM05D002694 ORTHO05D002927 1.9e-07 58.9 47 66.0
FAN13G1292 Fragaria x ananassa HOM05D002694 ORTHO05D002927 1.9e-07 58.9 47 66.0
Glyma.12G170100 Glycine max HOM05D002694 ORTHO05D002927 1.9e-07 58.9 47 63.8
Hma1.2p1_0569F.1_g180310 Hydrangea macrophylla HOM05D002694 ORTHO05D002927 1.9e-07 58.9 47 63.8
Lalb_Chr15g0090681 Lupinus albus HOM05D002694 ORTHO05D002927 1.9e-07 58.9 47 63.8
SGA_v2.0_scaffold92G28183 Striga asiatica HOM05D002694 ORTHO05D002927 1.9e-07 58.9 47 57.4
GSVIVG01026090001 Vitis vinifera HOM05D002694 ORTHO05D002927 1.9e-07 58.9 47 61.7
ECA233G5355 Erigeron canadensis HOM05D002694 ORTHO05D002927 2.5e-07 58.5 42 69.0
FvH4_5g28950 Fragaria vesca HOM05D002694 ORTHO05D002927 2.5e-07 58.5 47 66.0
FAN18G4351 Fragaria x ananassa HOM05D002694 ORTHO05D002927 2.5e-07 58.5 47 66.0
MBI06_g17221_MAGBIO Magnolia biondii HOM05D002694 ORTHO05D002927 2.5e-07 58.5 47 63.8
Oeu000112.1 Olea europaea HOM05D002694 ORTHO05D002927 2.5e-07 58.5 47 59.6
Solyc06g064910.3 Solanum lycopersicum HOM05D002694 ORTHO05D002927 2.5e-07 58.5 43 69.8
Sopen06g023430 Solanum pennellii HOM05D002694 ORTHO05D002927 2.5e-07 58.5 43 69.8
TAR628G0910 Trochodendron aralioides HOM05D002694 ORTHO05D002927 2.5e-07 58.5 42 69.0
arahy.Tifrunner.gnm1.ann1.LAND87 Arachis hypogaea HOM05D002694 ORTHO05D002927 3.2e-07 58.2 47 61.7
arahy.Tifrunner.gnm1.ann1.YNH2A3 Arachis hypogaea HOM05D002694 ORTHO05D002927 3.2e-07 58.2 47 61.7
EL10Ac1g00138 Beta vulgaris HOM05D002694 ORTHO05D002927 3.2e-07 58.2 47 57.4
CiPaw.05G049600 Carya illinoinensis HOM05D002694 ORTHO05D002927 3.2e-07 58.2 47 66.0
Gohir.D13G034000 Gossypium hirsutum HOM05D002694 ORTHO05D002927 3.2e-07 58.2 47 61.7
Manes.02G199200 Manihot esculenta HOM05D002694 ORTHO05D002927 3.2e-07 58.2 47 61.7
Aa31LG9G14770 Aethionema arabicum HOM05D002694 ORTHO05D002927 4.2e-07 57.8 47 61.7
CAN.G308.29 Capsicum annuum HOM05D002694 ORTHO05D002927 4.2e-07 57.8 43 67.4
AUR62004598 Chenopodium quinoa HOM05D002694 ORTHO05D002927 4.2e-07 57.8 47 57.4
THA.LOC104816530 Tarenaya hassleriana HOM05D002694 ORTHO05D002927 4.2e-07 57.8 43 67.4
COL.COLO4_11774 Corchorus olitorius HOM05D002694 ORTHO05D002927 5.5e-07 57.4 47 61.7
Lalb_Chr07g0185771 Lupinus albus HOM05D002694 ORTHO05D002927 5.5e-07 57.4 47 61.7
Oeu036664.1 Olea europaea HOM05D002694 ORTHO05D002927 5.5e-07 57.4 47 59.6
Ah.05g178600 Amaranthus hybridus HOM05D002694 ORTHO05D002927 7.2e-07 57.0 47 57.4
Nitab4.5_0005772g0050 Nicotiana tabacum HOM05D002694 ORTHO05D002927 7.2e-07 57.0 43 67.4
PGSC0003DMG400005188 Solanum tuberosum HOM05D002694 ORTHO05D002927 7.2e-07 57.0 43 67.4
CARHR260210 Cardamine hirsuta HOM05D002694 ORTHO05D002927 9.4e-07 56.6 47 61.7
Duzib132G0043 Durio zibethinus HOM05D002694 ORTHO05D002927 9.4e-07 56.6 47 59.6
Migut.N01049 Erythranthe guttata HOM05D002694 ORTHO05D002927 9.4e-07 56.6 47 57.4
Eucgr.I02740 Eucalyptus grandis HOM05D002694 ORTHO05D002927 9.4e-07 56.6 47 61.7
Gorai.013G038500 Gossypium raimondii HOM05D002694 ORTHO05D002927 9.4e-07 56.6 47 61.7
THA.LOC104813107 Tarenaya hassleriana HOM05D002694 ORTHO05D002927 9.4e-07 56.6 47 59.6
Aqoxy5G02647 Aquilegia oxysepala HOM05D002694 ORTHO05D002927 1.2e-06 56.2 47 55.3
A09p41810 Brassica napus HOM05D002694 ORTHO05D002927 1.2e-06 56.2 47 63.8
CsaV3_6G004700 Cucumis sativus L. HOM05D002694 ORTHO05D002927 1.2e-06 56.2 44 59.1
Duzib052G0561 Durio zibethinus HOM05D002694 ORTHO05D002927 1.2e-06 56.2 47 59.6
Gohir.A13G035700 Gossypium hirsutum HOM05D002694 ORTHO05D002927 1.2e-06 56.2 47 61.7
AL6G42880 Arabidopsis lyrata HOM05D002694 ORTHO05D002927 1.6e-06 55.8 47 59.6
BcaC05g26199 Brassica carinata HOM05D002694 ORTHO05D002927 1.6e-06 55.8 47 63.8
A09p29540 Brassica napus HOM05D002694 ORTHO05D002927 1.6e-06 55.8 47 59.6
C05p22070 Brassica napus HOM05D002694 ORTHO05D002927 1.6e-06 55.8 47 63.8
BolC5t30903H Brassica oleracea HOM05D002694 ORTHO05D002927 1.6e-06 55.8 47 63.8
BraA09t38524Z Brassica rapa HOM05D002694 ORTHO05D002927 1.6e-06 55.8 47 59.6
BraA09t39670Z Brassica rapa HOM05D002694 ORTHO05D002927 1.6e-06 55.8 47 63.8
Cpa.g.sc31.40 Carica papaya HOM05D002694 ORTHO05D002927 1.6e-06 55.8 47 61.7
AUR62023546 Chenopodium quinoa HOM05D002694 ORTHO05D002927 1.6e-06 55.8 47 55.3
MELO3C019941.2 Cucumis melo HOM05D002694 ORTHO05D002927 1.6e-06 55.8 44 59.1
Aa31LG7G6940 Aethionema arabicum HOM05D002694 ORTHO05D002927 2.1e-06 55.5 47 61.7
BcaB01g01389 Brassica carinata HOM05D002694 ORTHO05D002927 2.1e-06 55.5 47 59.6
Manes.02G202200 Manihot esculenta HOM05D002694 ORTHO05D002927 2.1e-06 55.5 47 59.6
Potri.013G105300 Populus trichocarpa HOM05D002694 ORTHO05D002927 2.1e-06 55.5 47 59.6
Carub.0006s2773 Capsella rubella HOM05D002694 ORTHO05D002927 2.7e-06 55.1 47 59.6
Nn5g27493 Nelumbo nucifera HOM05D002694 ORTHO05D002927 2.7e-06 55.1 47 59.6
Sabra13G0091000 Salix brachista HOM05D002694 ORTHO05D002927 2.7e-06 55.1 47 59.6
Sed0009071 Sechium edule HOM05D002694 ORTHO05D002927 2.7e-06 55.1 44 56.8
Thecc.02G089100 Theobroma cacao HOM05D002694 ORTHO05D002927 2.7e-06 55.1 47 59.6
Carub.0001s2243 Capsella rubella HOM05D002694 ORTHO05D002927 3.6e-06 54.7 47 61.7
CARHR023310 Cardamine hirsuta HOM05D002694 ORTHO05D002927 3.6e-06 54.7 47 63.8
PGR042G0594 Punica granatum HOM05D002694 ORTHO05D002927 3.6e-06 54.7 47 59.6
Sp6g08390 Schrenkiella parvula HOM05D002694 ORTHO05D002927 3.6e-06 54.7 47 57.4
BcaC04g20963 Brassica carinata HOM05D002694 ORTHO05D002927 4.7e-06 54.3 47 57.4
C09p37480 Brassica napus HOM05D002694 ORTHO05D002927 4.7e-06 54.3 47 57.4
BolC9t56579H Brassica oleracea HOM05D002694 ORTHO05D002927 4.7e-06 54.3 47 57.4
CDE06G1701 Ceratophyllum demersum HOM05D002694 ORTHO05D002927 4.7e-06 54.3 47 53.2
CsaV3_6G037510 Cucumis sativus L. HOM05D002694 ORTHO05D002927 4.7e-06 54.3 48 54.2
Hma1.2p1_1197F.1_g266160 Hydrangea macrophylla HOM05D002694 ORTHO05D002927 4.7e-06 54.3 47 57.4
SalBow6G7198 Salvia bowleyana HOM05D002694 ORTHO05D002927 4.7e-06 54.3 47 55.3
Sed0018888 Sechium edule HOM05D002694 ORTHO05D002927 4.7e-06 54.3 47 57.4
CANSAT21G0955 Cannabis sativa HOM05D002694 ORTHO05D002927 6.1e-06 53.9 48 56.2
Thhalv10006618m.g Eutrema salsugineum HOM05D002694 ORTHO05D002927 6.1e-06 53.9 47 61.7
Thhalv10028375m.g Eutrema salsugineum HOM05D002694 ORTHO05D002927 6.1e-06 53.9 47 57.4
MSTRG.5220 Avicennia marina HOM05D002694 ORTHO05D002927 8.0e-06 53.5 47 51.1
MELO3C014361.2 Cucumis melo HOM05D002694 ORTHO05D002927 8.0e-06 53.5 47 55.3
Dinv19891 Davidia involucrata HOM05D002694 ORTHO05D002927 8.0e-06 53.5 47 59.6
Dinv41760 Davidia involucrata HOM05D002694 ORTHO05D002927 8.0e-06 53.5 47 59.6
PSO017G2635 Papaver somniferum HOM05D002694 ORTHO05D002927 8.0e-06 53.5 47 55.3
PSO170G0717 Papaver somniferum HOM05D002694 ORTHO05D002927 8.0e-06 53.5 47 55.3


User provided reference genes

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