Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400031464 Solanum tuberosum HOM05D002624 ORTHO05D002796 6.7e-63 243.8 121 100.0
PGSC0003DMG400015026 Solanum tuberosum HOM05D002624 ORTHO05D002796 2.2e-53 212.2 121 89.3
PGSC0003DMG400010579 Solanum tuberosum HOM05D002624 ORTHO05D002796 6.3e-53 210.7 116 90.5
CAN.G157.28 Capsicum annuum HOM05D002624 ORTHO05D002796 3.1e-52 208.4 116 88.8
Sopen02g003670 Solanum pennellii HOM05D002624 ORTHO05D002796 1.7e-50 202.6 116 87.1
Solyc02g014090.3 Solanum lycopersicum HOM05D002624 ORTHO05D002796 3.8e-50 201.4 116 86.2
Hma1.2p1_0122F.1_g057570 Hydrangea macrophylla HOM05D002624 ORTHO05D002796 8.0e-32 140.6 119 65.5
Cc11_g02290 Coffea canephora HOM05D002624 ORTHO05D002796 1.0e-31 140.2 118 64.4
CSS0039901 Camellia sinensis var. sinensis HOM05D002624 ORTHO05D002796 4.4e-30 134.8 119 60.5
Actinidia04060 Actinidia chinensis HOM05D002624 ORTHO05D002796 1.7e-29 132.9 118 60.2
Actinidia04323 Actinidia chinensis HOM05D002624 ORTHO05D002796 1.7e-29 132.9 117 61.5
QL03p046358 Quercus lobata HOM05D002624 ORTHO05D002796 3.7e-29 131.7 117 59.8
Thecc.02G160100 Theobroma cacao HOM05D002624 ORTHO05D002796 2.4e-28 129.0 118 59.3
Duzib052G0930 Durio zibethinus HOM05D002624 ORTHO05D002796 7.0e-28 127.5 118 58.5
MSTRG.13686 Avicennia marina HOM05D002624 ORTHO05D002796 1.2e-27 126.7 117 57.3
Rhsim09G0076300 Rhododendron simsii HOM05D002624 ORTHO05D002796 1.2e-27 126.7 117 60.7
COL.COLO4_19601 Corchorus olitorius HOM05D002624 ORTHO05D002796 1.6e-27 126.3 118 58.5
CiPaw.05G168900 Carya illinoinensis HOM05D002624 ORTHO05D002796 2.3e-26 122.5 117 56.4
Duzib132G0519 Durio zibethinus HOM05D002624 ORTHO05D002796 3.9e-26 121.7 118 57.6
GSVIVG01012047001 Vitis vinifera HOM05D002624 ORTHO05D002796 6.6e-26 120.9 115 55.7
Duzib248G0716 Durio zibethinus HOM05D002624 ORTHO05D002796 1.1e-25 120.2 118 56.8
Oeu028418.2 Olea europaea HOM05D002624 ORTHO05D002796 7.3e-25 117.5 117 58.1
Eucgr.J00866 Eucalyptus grandis HOM05D002624 ORTHO05D002796 1.6e-24 116.3 118 55.1
PGSC0003DMG400019763 Solanum tuberosum HOM05D002624 ORTHO05D002796 1.6e-24 116.3 117 61.5
Migut.E00698 Erythranthe guttata HOM05D002624 ORTHO05D002796 4.7e-24 114.8 118 57.6
Solyc11g039960.2 Solanum lycopersicum HOM05D002624 ORTHO05D002796 1.4e-23 113.2 117 60.7
Gohir.D02G187900 Gossypium hirsutum HOM05D002624 ORTHO05D002796 3.1e-23 112.1 118 53.4
DCAR_002577 Daucus carota HOM05D002624 ORTHO05D002796 5.2e-23 111.3 117 53.0
Potri.005G092800 Populus trichocarpa HOM05D002624 ORTHO05D002796 8.9e-23 110.5 117 52.1
Gohir.A03G164700 Gossypium hirsutum HOM05D002624 ORTHO05D002796 1.5e-22 109.8 118 52.5
Atru.chr11.1151 Acer truncatum HOM05D002624 ORTHO05D002796 5.8e-22 107.8 117 53.0
Cpa.g.sc0.146 Carica papaya HOM05D002624 ORTHO05D002796 9.8e-22 107.1 119 53.8
CiPaw.06G060600 Carya illinoinensis HOM05D002624 ORTHO05D002796 9.8e-22 107.1 117 54.7
Gorai.005G210600 Gossypium raimondii HOM05D002624 ORTHO05D002796 9.8e-22 107.1 118 51.7
Prupe.1G347300 Prunus persica HOM05D002624 ORTHO05D002796 9.8e-22 107.1 110 50.0
Sopen11g017760 Solanum pennellii HOM05D002624 ORTHO05D002796 9.8e-22 107.1 117 59.0
Gohir.A12G133800 Gossypium hirsutum HOM05D002624 ORTHO05D002796 3.7e-21 105.1 117 53.0
Sabra05G0076900 Salix brachista HOM05D002624 ORTHO05D002796 3.7e-21 105.1 117 49.6
TAR629G1845 Trochodendron aralioides HOM05D002624 ORTHO05D002796 4.9e-21 104.8 117 49.6
Oeu026902.1 Olea europaea HOM05D002624 ORTHO05D002796 6.4e-21 104.4 116 50.9
MSTRG.2059 Avicennia marina HOM05D002624 ORTHO05D002796 1.4e-20 103.2 103 55.3
Gohir.D13G061800 Gossypium hirsutum HOM05D002624 ORTHO05D002796 5.4e-20 101.3 118 52.5
Potri.007G071500 Populus trichocarpa HOM05D002624 ORTHO05D002796 7.0e-20 100.9 117 51.3
TWI77G0662 Tripterygium wilfordii HOM05D002624 ORTHO05D002796 7.0e-20 100.9 115 47.8
Gorai.013G070300 Gossypium raimondii HOM05D002624 ORTHO05D002796 7.8e-19 97.4 118 51.7
CsaV3_3G031410 Cucumis sativus L. HOM05D002624 ORTHO05D002796 1.7e-18 96.3 117 47.0
Gohir.A13G060100 Gossypium hirsutum HOM05D002624 ORTHO05D002796 1.7e-18 96.3 118 50.8
Gorai.008G148600 Gossypium raimondii HOM05D002624 ORTHO05D002796 3.9e-18 95.1 117 49.6
Sc10g0006950 Simmondsia chinensis HOM05D002624 ORTHO05D002796 3.9e-18 95.1 118 52.5
MD13G1005700 Malus domestica HOM05D002624 ORTHO05D002796 5.0e-18 94.7 110 46.4
SGA_v2.0_scaffold187G40278 Striga asiatica HOM05D002624 ORTHO05D002796 5.0e-18 94.7 115 53.0
Sed0021624 Sechium edule HOM05D002624 ORTHO05D002796 6.6e-18 94.4 116 46.6
TWI74G1308 Tripterygium wilfordii HOM05D002624 ORTHO05D002796 8.6e-18 94.0 115 45.2
THA.LOC104818371 Tarenaya hassleriana HOM05D002624 ORTHO05D002796 1.1e-17 93.6 117 48.7
Aqoxy3G04257 Aquilegia oxysepala HOM05D002624 ORTHO05D002796 2.5e-17 92.4 115 47.0
AUR62015235 Chenopodium quinoa HOM05D002624 ORTHO05D002796 3.3e-17 92.0 115 47.8
AUR62017697 Chenopodium quinoa HOM05D002624 ORTHO05D002796 3.3e-17 92.0 115 47.8
Ah.01g001540 Amaranthus hybridus HOM05D002624 ORTHO05D002796 4.3e-17 91.7 115 49.6
CiPaw.06G060500 Carya illinoinensis HOM05D002624 ORTHO05D002796 4.3e-17 91.7 117 47.9
Lj3C849T16 Lonicera japonica HOM05D002624 ORTHO05D002796 4.3e-17 91.7 115 49.6
Hund24372 Selenicereus undatus HOM05D002624 ORTHO05D002796 7.3e-17 90.9 118 49.2
Gohir.D01G013950 Gossypium hirsutum HOM05D002624 ORTHO05D002796 1.6e-16 89.7 105 48.6
Gorai.002G015700 Gossypium raimondii HOM05D002624 ORTHO05D002796 1.6e-16 89.7 105 48.6
MD16G1002200 Malus domestica HOM05D002624 ORTHO05D002796 1.6e-16 89.7 110 49.1
PGSC0003DMG400039583 Solanum tuberosum HOM05D002624 ORTHO05D002796 2.1e-16 89.4 46 91.3
MSTRG.8084 Avicennia marina HOM05D002624 ORTHO05D002796 2.8e-16 89.0 117 47.9
CANSAT56G1621 Cannabis sativa HOM05D002624 ORTHO05D002796 4.7e-16 88.2 117 45.3
Gohir.A01G012638 Gossypium hirsutum HOM05D002624 ORTHO05D002796 4.7e-16 88.2 105 46.7
PGR044G2474 Punica granatum HOM05D002624 ORTHO05D002796 1.4e-15 86.7 117 46.2
MELO3C024023.2 Cucumis melo HOM05D002624 ORTHO05D002796 2.3e-15 85.9 116 43.1
Ciclev10020822m.g Citrus clementina HOM05D002624 ORTHO05D002796 5.2e-15 84.7 117 42.7
Ciclev10032391m.g Citrus clementina HOM05D002624 ORTHO05D002796 1.2e-14 83.6 119 44.5
EL10Ac9g22947 Beta vulgaris HOM05D002624 ORTHO05D002796 2.0e-14 82.8 115 44.3
Nn3g18655 Nelumbo nucifera HOM05D002624 ORTHO05D002796 3.4e-14 82.0 116 44.0
Carub.0006s2092 Capsella rubella HOM05D002624 ORTHO05D002796 5.8e-14 81.3 116 44.0
DCAR_026900 Daucus carota HOM05D002624 ORTHO05D002796 7.5e-14 80.9 118 44.1
Ah.01g012330 Amaranthus hybridus HOM05D002624 ORTHO05D002796 1.3e-13 80.1 115 44.3
Sed0003440 Sechium edule HOM05D002624 ORTHO05D002796 1.3e-13 80.1 115 43.5
Sabra07G0060200 Salix brachista HOM05D002624 ORTHO05D002796 2.2e-13 79.3 117 42.7
Cpa.g.sc467.2 Carica papaya HOM05D002624 ORTHO05D002796 2.9e-13 79.0 118 39.0
Cfa017835 Carpinus fangiana HOM05D002624 ORTHO05D002796 3.7e-13 78.6 117 39.3
THA.LOC104819378 Tarenaya hassleriana HOM05D002624 ORTHO05D002796 4.9e-13 78.2 118 42.4
Aa31LG3G18340 Aethionema arabicum HOM05D002624 ORTHO05D002796 1.4e-12 76.6 120 41.7
DCAR_030382 Daucus carota HOM05D002624 ORTHO05D002796 1.9e-12 76.3 90 46.7
Thhalv10004348m.g Eutrema salsugineum HOM05D002624 ORTHO05D002796 1.9e-12 76.3 116 42.2
Potri.012G036600 Populus trichocarpa HOM05D002624 ORTHO05D002796 5.4e-12 74.7 117 36.8
TWI36G1048 Tripterygium wilfordii HOM05D002624 ORTHO05D002796 5.4e-12 74.7 116 41.4
CiPaw.16G072300 Carya illinoinensis HOM05D002624 ORTHO05D002796 7.1e-12 74.3 118 39.0
AL6G34320 Arabidopsis lyrata HOM05D002624 ORTHO05D002796 9.2e-12 73.9 116 41.4
Ca_12980_v3 Cicer arietinum L. HOM05D002624 ORTHO05D002796 4.6e-11 71.6 116 40.5
FAN07G1339 Fragaria x ananassa HOM05D002624 ORTHO05D002796 4.6e-11 71.6 115 42.6
PGR083G2331 Punica granatum HOM05D002624 ORTHO05D002796 4.6e-11 71.6 117 43.6
Glyma.09G282400 Glycine max HOM05D002624 ORTHO05D002796 6.0e-11 71.2 116 38.8
Sp6g34740 Schrenkiella parvula HOM05D002624 ORTHO05D002796 7.8e-11 70.9 123 41.5
FvH4_4g36950 Fragaria vesca HOM05D002624 ORTHO05D002796 1.0e-10 70.5 115 41.7
FAN12G0116 Fragaria x ananassa HOM05D002624 ORTHO05D002796 1.0e-10 70.5 115 41.7
Sed0026870 Sechium edule HOM05D002624 ORTHO05D002796 1.0e-10 70.5 118 39.8
PSO478G0115 Papaver somniferum HOM05D002624 ORTHO05D002796 1.3e-10 70.1 121 39.7
THA.LOC104800897 Tarenaya hassleriana HOM05D002624 ORTHO05D002796 1.3e-10 70.1 119 44.5
Thhalv10013674m.g Eutrema salsugineum HOM05D002624 ORTHO05D002796 1.7e-10 69.7 123 42.3
RcHm_v2.0_Chr4g0446721 Rosa chinensis HOM05D002624 ORTHO05D002796 1.7e-10 69.7 111 43.2
HanXRQChr13g0387751 Helianthus annuus HOM05D002624 ORTHO05D002796 3.0e-10 68.9 115 40.9
MELO3C002164.2 Cucumis melo HOM05D002624 ORTHO05D002796 3.9e-10 68.6 117 37.6
Manes.11G107501 Manihot esculenta HOM05D002624 ORTHO05D002796 3.9e-10 68.6 94 43.6
Carub.0006s0710 Capsella rubella HOM05D002624 ORTHO05D002796 5.1e-10 68.2 122 41.0
Sabra15G0023500 Salix brachista HOM05D002624 ORTHO05D002796 5.1e-10 68.2 117 40.2
CARHR190400 Cardamine hirsuta HOM05D002624 ORTHO05D002796 6.6e-10 67.8 116 37.1
CARHR204980 Cardamine hirsuta HOM05D002624 ORTHO05D002796 8.6e-10 67.4 122 41.0
FAN17G1224 Fragaria x ananassa HOM05D002624 ORTHO05D002796 8.6e-10 67.4 115 40.9
Ca_03381_v3 Cicer arietinum L. HOM05D002624 ORTHO05D002796 1.1e-09 67.0 116 38.8
Os10g0485500 Oryza sativa ssp. japonica HOM05D002624 ORTHO05D002796 1.1e-09 67.0 116 40.5
PSO063G1158 Papaver somniferum HOM05D002624 ORTHO05D002796 1.1e-09 67.0 122 41.8
RcHm_v2.0_Chr7g0177231 Rosa chinensis HOM05D002624 ORTHO05D002796 1.1e-09 67.0 100 38.0
Sed0024984 Sechium edule HOM05D002624 ORTHO05D002796 1.1e-09 67.0 100 37.0
AL6G18610 Arabidopsis lyrata HOM05D002624 ORTHO05D002796 1.5e-09 66.6 122 40.2
AT5G23130 Arabidopsis thaliana HOM05D002624 ORTHO05D002796 1.5e-09 66.6 116 38.8
C09p68740 Brassica napus HOM05D002624 ORTHO05D002796 1.9e-09 66.2 127 40.9
CsaV3_1G007480 Cucumis sativus L. HOM05D002624 ORTHO05D002796 2.5e-09 65.9 100 39.0
Glyma.20G003100 Glycine max HOM05D002624 ORTHO05D002796 2.5e-09 65.9 116 37.1
PSO782G1181 Papaver somniferum HOM05D002624 ORTHO05D002796 3.3e-09 65.5 122 41.0
AT5G08200 Arabidopsis thaliana HOM05D002624 ORTHO05D002796 4.3e-09 65.1 121 39.7
PSO017G2812 Papaver somniferum HOM05D002624 ORTHO05D002796 5.6e-09 64.7 121 39.7
Sp2g23990 Schrenkiella parvula HOM05D002624 ORTHO05D002796 5.6e-09 64.7 116 39.7
VMungo0251G0947 Vigna mungo HOM05D002624 ORTHO05D002796 5.6e-09 64.7 116 37.9
FvH4_5g18360 Fragaria vesca HOM05D002624 ORTHO05D002796 7.3e-09 64.3 100 41.0
BcaC03g13211 Brassica carinata HOM05D002624 ORTHO05D002796 2.1e-08 62.8 118 37.3
FAN18G1405 Fragaria x ananassa HOM05D002624 ORTHO05D002796 2.8e-08 62.4 100 40.0
Lj2g0005161 Lotus japonicus HOM05D002624 ORTHO05D002796 3.6e-08 62.0 115 38.3
Lalb_Chr17g0337881 Lupinus albus HOM05D002624 ORTHO05D002796 3.6e-08 62.0 116 36.2
Lj6C719T4 Lonicera japonica HOM05D002624 ORTHO05D002796 6.2e-08 61.2 108 38.0
DCAR_023454 Daucus carota HOM05D002624 ORTHO05D002796 8.1e-08 60.8 117 41.0
MD06G1239300 Malus domestica HOM05D002624 ORTHO05D002796 8.1e-08 60.8 100 41.0
Sopen03g017180 Solanum pennellii HOM05D000120 ORTHO05D021015 8.1e-08 60.8 28 96.4
ATR0618G391 Amborella trichopoda HOM05D002624 ORTHO05D002796 1.8e-07 59.7 108 42.6
FAN08G0274 Fragaria x ananassa HOM05D002624 ORTHO05D002796 3.1e-07 58.9 100 40.0
Migut.L00860 Erythranthe guttata HOM05D002624 ORTHO05D002796 4.0e-07 58.5 118 36.4
Psat6g099320 Pisum sativum HOM05D002624 ORTHO05D002796 4.0e-07 58.5 114 36.8
Zm00001eb045390 Zea mays HOM05D002624 ORTHO05D002796 4.0e-07 58.5 117 39.3
FAN13G2428 Fragaria x ananassa HOM05D002624 ORTHO05D002796 5.2e-07 58.2 100 40.0
Lalb_Chr10g0094991 Lupinus albus HOM05D002624 ORTHO05D002796 6.8e-07 57.8 116 37.1
A03p03680 Brassica napus HOM05D002624 ORTHO05D002796 8.9e-07 57.4 118 35.6
BraA03t09716Z Brassica rapa HOM05D002624 ORTHO05D002796 8.9e-07 57.4 118 35.6
Aa31LG11G2620 Aethionema arabicum HOM05D002624 ORTHO05D002796 1.2e-06 57.0 116 36.2
FAN04G1776 Fragaria x ananassa HOM05D002624 ORTHO05D002796 2.6e-06 55.8 100 37.0
Phvul.003G005400 Phaseolus vulgaris HOM05D002624 ORTHO05D002796 2.6e-06 55.8 116 35.3
Zm00001eb221300 Zea mays HOM05D002624 ORTHO05D002796 2.6e-06 55.8 117 36.8
BolC3t12949H Brassica oleracea HOM05D002624 ORTHO05D002796 3.4e-06 55.5 117 35.0
Phvul.006G036300 Phaseolus vulgaris HOM05D002624 ORTHO05D002796 3.4e-06 55.5 116 32.8
HPP92_022487 Vanilla planifolia HOM05D002624 ORTHO05D002796 5.8e-06 54.7 114 36.8
BcaB01g05622 Brassica carinata HOM05D002624 ORTHO05D002796 7.6e-06 54.3 117 35.0
TPR.G8238 Trifolium pratense HOM05D002624 ORTHO05D002796 7.6e-06 54.3 116 34.5
Prupe.5G243200 Prunus persica HOM05D002624 ORTHO05D002796 9.9e-06 53.9 117 35.9


User provided reference genes

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