Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400031414 Solanum tuberosum HOM05D000141 ORTHO05D004993 2.2e-91 339.0 175 100.0
Solyc11g010560.3 Solanum lycopersicum HOM05D000141 ORTHO05D004993 3.7e-54 215.3 116 94.0
Sopen11g005360 Solanum pennellii HOM05D000141 ORTHO05D004993 1.4e-53 213.4 116 93.1
CAN.G1344.1 Capsicum annuum HOM05D000141 ORTHO05D004993 2.7e-52 209.1 123 87.8
Peaxi162Scf00778g00009 Petunia axillaris HOM05D000141 ORTHO05D004993 3.5e-52 208.8 116 90.5
Nitab4.5_0025132g0010 Nicotiana tabacum HOM05D000141 ORTHO05D004993 4.5e-52 208.4 116 90.5
MSTRG.15690 Avicennia marina HOM05D000141 ORTHO05D004993 3.0e-48 195.7 116 85.3
Atru.chr3.1257 Acer truncatum HOM05D000141 ORTHO05D004993 4.0e-48 195.3 117 85.5
Actinidia25312 Actinidia chinensis HOM05D000141 ORTHO05D004993 2.0e-47 193.0 363 38.8
Dinv13609 Davidia involucrata HOM05D000141 ORTHO05D004993 2.6e-47 192.6 114 86.8
Rhsim10G0172400 Rhododendron simsii HOM05D000141 ORTHO05D004993 2.6e-47 192.6 114 86.0
GSVIVG01005935001 Vitis vinifera HOM05D000141 ORTHO05D004993 2.6e-47 192.6 115 84.3
CSS0021935 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004993 3.4e-47 192.2 114 85.1
CSS0023880 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004993 3.4e-47 192.2 114 85.1
Ciclev10024724m.g Citrus clementina HOM05D000141 ORTHO05D004993 3.4e-47 192.2 117 84.6
SalBow5G1291 Salvia bowleyana HOM05D000141 ORTHO05D004993 4.4e-47 191.8 134 72.4
TAR376G1001 Trochodendron aralioides HOM05D000141 ORTHO05D004993 4.4e-47 191.8 135 75.6
CANSAT54G0158 Cannabis sativa HOM05D000141 ORTHO05D004993 7.5e-47 191.0 117 83.8
Dinv36920 Davidia involucrata HOM05D000141 ORTHO05D004993 9.8e-47 190.7 135 75.6
MBI02_g32604_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D004993 9.8e-47 190.7 117 83.8
Potri.007G010700 Populus trichocarpa HOM05D000141 ORTHO05D004993 9.8e-47 190.7 117 83.8
Hund14088 Selenicereus undatus HOM05D000141 ORTHO05D004993 9.8e-47 190.7 114 85.1
vmacro13004 Vaccinium macrocarpon HOM05D000141 ORTHO05D004993 9.8e-47 190.7 114 85.1
PGR031G3531 Punica granatum HOM05D000141 ORTHO05D004993 1.3e-46 190.3 114 84.2
arahy.Tifrunner.gnm1.ann1.46GERB Arachis hypogaea HOM05D000141 ORTHO05D004993 1.7e-46 189.9 170 61.2
AUR62003657 Chenopodium quinoa HOM05D000141 ORTHO05D004993 1.7e-46 189.9 114 85.1
AUR62017965 Chenopodium quinoa HOM05D000141 ORTHO05D004993 1.7e-46 189.9 114 85.1
COL.COLO4_27349 Corchorus olitorius HOM05D000141 ORTHO05D004993 1.7e-46 189.9 118 84.7
Sabra07G0008100 Salix brachista HOM05D000141 ORTHO05D004993 1.7e-46 189.9 117 82.9
VMungo0251G3517 Vigna mungo HOM05D000141 ORTHO05D004993 1.7e-46 189.9 117 82.9
Cfa006890 Carpinus fangiana HOM05D000141 ORTHO05D004993 2.8e-46 189.1 117 82.9
Manes.12G126900 Manihot esculenta HOM05D000141 ORTHO05D004993 2.8e-46 189.1 117 82.1
Aa31LG1G16550 Aethionema arabicum HOM05D000141 ORTHO05D004993 4.9e-46 188.3 117 82.1
arahy.Tifrunner.gnm1.ann1.029WE6 Arachis hypogaea HOM05D000141 ORTHO05D004993 4.9e-46 188.3 170 60.6
CiPaw.07G048100 Carya illinoinensis HOM05D000141 ORTHO05D004993 4.9e-46 188.3 117 82.1
Haze_03862 Corylus avellana HOM05D000141 ORTHO05D004993 4.9e-46 188.3 118 82.2
Migut.K00793 Erythranthe guttata HOM05D000141 ORTHO05D004993 4.9e-46 188.3 113 81.4
Gohir.D11G217000 Gossypium hirsutum HOM05D000141 ORTHO05D004993 4.9e-46 188.3 118 83.9
Gorai.007G233100 Gossypium raimondii HOM05D000141 ORTHO05D004993 4.9e-46 188.3 118 83.9
Phvul.003G289200 Phaseolus vulgaris HOM05D000141 ORTHO05D004993 4.9e-46 188.3 117 82.1
TWI74G0717 Tripterygium wilfordii HOM05D000141 ORTHO05D004993 4.9e-46 188.3 117 82.9
Duzib147G0545 Durio zibethinus HOM05D000141 ORTHO05D004993 6.3e-46 188.0 166 63.9
Eucgr.I00545 Eucalyptus grandis HOM05D000141 ORTHO05D004993 6.3e-46 188.0 114 82.5
Gohir.A11G206600 Gossypium hirsutum HOM05D000141 ORTHO05D004993 6.3e-46 188.0 114 84.2
Lj2C535G3 Lonicera japonica HOM05D000141 ORTHO05D004993 6.3e-46 188.0 167 63.5
THA.LOC104801691 Tarenaya hassleriana HOM05D000141 ORTHO05D004993 6.3e-46 188.0 117 80.3
Thecc.01G091400 Theobroma cacao HOM05D000141 ORTHO05D004993 6.3e-46 188.0 114 84.2
unitig_748.g7037 Utricularia gibba HOM05D000141 ORTHO05D004993 6.3e-46 188.0 166 61.4
Glyma.18G146600 Glycine max HOM05D000141 ORTHO05D004993 8.3e-46 187.6 117 81.2
SGA_v2.0_scaffold45G17236 Striga asiatica HOM05D000141 ORTHO05D004993 8.3e-46 187.6 116 78.4
EL10Ac6g15211 Beta vulgaris HOM05D000141 ORTHO05D004993 1.1e-45 187.2 114 83.3
Glyma.08G279800 Glycine max HOM05D000141 ORTHO05D004993 1.1e-45 187.2 117 81.2
Prupe.6G198800 Prunus persica HOM05D000141 ORTHO05D004993 1.1e-45 187.2 117 81.2
TWI77G1015 Tripterygium wilfordii HOM05D000141 ORTHO05D004993 1.1e-45 187.2 117 82.1
Psat4g119320 Pisum sativum HOM05D000141 ORTHO05D004993 1.4e-45 186.8 117 80.3
Cpa.g.sc55.32 Carica papaya HOM05D000141 ORTHO05D004993 1.8e-45 186.4 117 81.2
Lj4g0027101 Lotus japonicus HOM05D000141 ORTHO05D004993 3.1e-45 185.7 117 81.2
Medtr8g471180 Medicago truncatula HOM05D000141 ORTHO05D004993 4.1e-45 185.3 117 80.3
MD00G1019700 Malus domestica HOM05D000141 ORTHO05D004993 5.4e-45 184.9 117 80.3
Sc16g0000540 Simmondsia chinensis HOM05D006593 ORTHO05D004993 5.4e-45 184.9 114 80.7
Thhalv10003525m.g Eutrema salsugineum HOM05D000141 ORTHO05D004993 7.0e-45 184.5 117 80.3
Ah.03g140120 Amaranthus hybridus HOM05D000141 ORTHO05D004993 9.1e-45 184.1 114 82.5
THA.LOC104819293 Tarenaya hassleriana HOM05D000141 ORTHO05D004993 9.1e-45 184.1 114 80.7
Carub.0008s2631 Capsella rubella HOM05D000141 ORTHO05D004993 1.2e-44 183.7 117 79.5
ClCG01G018390 Citrullus lanatus HOM05D000141 ORTHO05D004993 1.2e-44 183.7 138 71.0
FAN26G1575 Fragaria x ananassa HOM05D000141 ORTHO05D004993 1.2e-44 183.7 117 79.5
PSO541G3987 Papaver somniferum HOM05D000141 ORTHO05D004993 1.6e-44 183.3 135 71.1
PSO675G5554 Papaver somniferum HOM05D000141 ORTHO05D004993 1.6e-44 183.3 135 71.1
FvH4_1g19720 Fragaria vesca HOM05D000141 ORTHO05D004993 2.0e-44 183.0 117 79.5
FAN19G2112 Fragaria x ananassa HOM05D000141 ORTHO05D004993 2.0e-44 183.0 117 79.5
FAN28G0107 Fragaria x ananassa HOM05D000141 ORTHO05D004993 2.0e-44 183.0 117 79.5
QL06p035637 Quercus lobata HOM05D000141 ORTHO05D004993 2.0e-44 183.0 117 80.3
Sp2g28540 Schrenkiella parvula HOM05D000141 ORTHO05D004993 2.0e-44 183.0 117 79.5
Aqoxy6G01438 Aquilegia oxysepala HOM05D000141 ORTHO05D004993 2.7e-44 182.6 114 80.7
BcaB01g06283 Brassica carinata HOM05D000141 ORTHO05D004993 2.7e-44 182.6 114 81.6
Thhalv10012459m.g Eutrema salsugineum HOM05D000141 ORTHO05D004993 2.7e-44 182.6 169 60.9
unitig_0.g1718 Utricularia gibba HOM05D000141 ORTHO05D004993 2.7e-44 182.6 116 77.6
A06p32290 Brassica napus HOM05D000141 ORTHO05D004993 3.5e-44 182.2 117 78.6
C03p60620 Brassica napus HOM05D000141 ORTHO05D004993 3.5e-44 182.2 117 78.6
BraA06t26155Z Brassica rapa HOM05D000141 ORTHO05D004993 3.5e-44 182.2 117 78.6
Ca_22599_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004993 3.5e-44 182.2 117 78.6
Glyma.01G023600 Glycine max HOM05D000141 ORTHO05D004993 3.5e-44 182.2 114 80.7
TPR.G14602 Trifolium pratense HOM05D000141 ORTHO05D004993 3.5e-44 182.2 117 79.5
TAR628G0162 Trochodendron aralioides HOM05D000141 ORTHO05D004993 3.5e-44 182.2 114 81.6
BolC3t18317H Brassica oleracea HOM05D000141 ORTHO05D004993 5.9e-44 181.4 169 59.2
Phvul.002G147700 Phaseolus vulgaris HOM05D000141 ORTHO05D004993 5.9e-44 181.4 132 72.7
RcHm_v2.0_Chr2g0111301 Rosa chinensis HOM05D000141 ORTHO05D004993 5.9e-44 181.4 117 78.6
AT5G65460 Arabidopsis thaliana HOM05D000141 ORTHO05D004993 7.7e-44 181.0 117 79.5
Lalb_Chr05g0216301 Lupinus albus HOM05D000141 ORTHO05D004993 7.7e-44 181.0 117 76.9
Aa31LG3G16690 Aethionema arabicum HOM05D000141 ORTHO05D004993 1.0e-43 180.6 117 79.5
CARHR202820 Cardamine hirsuta HOM05D000141 ORTHO05D004993 1.0e-43 180.6 172 59.9
CARHR279440 Cardamine hirsuta HOM05D000141 ORTHO05D004993 1.0e-43 180.6 117 77.8
MELO3C007717.2 Cucumis melo HOM05D000141 ORTHO05D004993 1.0e-43 180.6 117 78.6
CsaV3_6G045040 Cucumis sativus L. HOM05D000141 ORTHO05D004993 1.0e-43 180.6 117 78.6
Eucgr.I00476 Eucalyptus grandis HOM05D000141 ORTHO05D004993 1.0e-43 180.6 114 79.8
AL8G43040 Arabidopsis lyrata HOM05D000141 ORTHO05D004993 1.7e-43 179.9 117 78.6
Carub.0006s0895 Capsella rubella HOM05D000141 ORTHO05D004993 1.7e-43 179.9 172 59.9
HPP92_005965 Vanilla planifolia HOM05D000141 ORTHO05D004993 1.7e-43 179.9 114 79.8
Zm00001eb372980 Zea mays HOM05D000141 ORTHO05D004993 1.7e-43 179.9 114 79.8
BcaB01g05532 Brassica carinata HOM05D000141 ORTHO05D004993 2.3e-43 179.5 114 79.8
A03p04560 Brassica napus HOM05D000141 ORTHO05D004993 2.3e-43 179.5 114 79.8
C03p05120 Brassica napus HOM05D000141 ORTHO05D004993 2.3e-43 179.5 114 79.8
BraA03t09798Z Brassica rapa HOM05D000141 ORTHO05D004993 2.3e-43 179.5 114 79.8
Glyma.02G041400 Glycine max HOM05D000141 ORTHO05D004993 2.3e-43 179.5 114 79.8
HanXRQChr13g0405071 Helianthus annuus HOM05D000141 ORTHO05D004993 2.3e-43 179.5 135 71.1
Sp6g32970 Schrenkiella parvula HOM05D000141 ORTHO05D004993 2.3e-43 179.5 169 60.4
ECA246G1560 Erigeron canadensis HOM05D006593 ORTHO05D004993 2.9e-43 179.1 114 79.8
FAN23G0308 Fragaria x ananassa HOM05D000404 ORTHO05D004993 2.9e-43 179.1 117 77.8
FAN23G1526 Fragaria x ananassa HOM05D000141 ORTHO05D004993 2.9e-43 179.1 117 77.8
Lalb_Chr05g0228501 Lupinus albus HOM05D000141 ORTHO05D004993 2.9e-43 179.1 117 79.5
AL6G20990 Arabidopsis lyrata HOM05D000141 ORTHO05D004993 5.0e-43 178.3 114 79.8
Lsat_1_v5_gn_3_61481 Lactuca sativa HOM05D000141 ORTHO05D004993 6.6e-43 177.9 114 80.7
Sed0001145 Sechium edule HOM05D000141 ORTHO05D004993 8.6e-43 177.6 138 69.6
VMungo1215G2324 Vigna mungo HOM05D000141 ORTHO05D004993 8.6e-43 177.6 115 77.4
AT5G10470 Arabidopsis thaliana HOM05D000141 ORTHO05D004993 1.5e-42 176.8 117 77.8
CDE10G0963 Ceratophyllum demersum HOM05D000141 ORTHO05D004993 2.5e-42 176.0 117 76.1
DCAR_016619 Daucus carota HOM05D000141 ORTHO05D004993 9.5e-42 174.1 164 58.5
ATR0665G420 Amborella trichopoda HOM05D000141 ORTHO05D004993 1.2e-41 173.7 113 80.5
SEGI_00023 Sequoiadendron giganteum HOM05D000141 ORTHO05D004993 3.6e-41 172.2 114 76.3
CDE10G0717 Ceratophyllum demersum HOM05D000141 ORTHO05D004993 4.0e-40 168.7 117 73.5
arahy.Tifrunner.gnm1.ann1.52WN7P Arachis hypogaea HOM05D000141 ORTHO05D004993 8.9e-40 167.5 117 75.2
arahy.Tifrunner.gnm1.ann1.5SKZ26 Arachis hypogaea HOM05D000141 ORTHO05D004993 8.9e-40 167.5 117 75.2
DCAR_003449 Daucus carota HOM05D000141 ORTHO05D004993 7.5e-39 164.5 113 75.2
Pp3c4_24010 Physcomitrium patens HOM05D000141 ORTHO05D004993 3.5e-36 155.6 113 68.1
SMO169G0019 Selaginella moellendorffii HOM05D000141 ORTHO05D004993 5.9e-36 154.8 114 70.2
SMO337G0058 Selaginella moellendorffii HOM05D000141 ORTHO05D004993 5.9e-36 154.8 114 68.4
AagrBONN_evm.TU.Sc2ySwM_228.4409 Anthoceros agrestis HOM05D000141 ORTHO05D004993 2.9e-35 152.5 113 69.0
Pp3c3_10920 Physcomitrium patens HOM05D000141 ORTHO05D004993 4.7e-33 145.2 117 62.4
Pp3c3_10921 Physcomitrium patens HOM05D000141 ORTHO05D004993 4.7e-33 145.2 117 62.4
Mapoly0022s0156 Marchantia polymorpha HOM05D000141 ORTHO05D004993 2.9e-30 136.0 113 61.1
COL.COLO4_22337 Corchorus olitorius HOM05D000141 ORTHO05D004993 3.6e-25 119.0 104 62.5
CBR_g78819 Chara braunii HOM05D000141 ORTHO05D004993 9.8e-23 110.9 116 47.4
GSVIVG01006736001 Vitis vinifera HOM05D000141 ORTHO05D004993 5.2e-16 88.6 68 69.1
Haze_03861 Corylus avellana HOM05D000141 ORTHO05D004993 1.5e-15 87.0 68 67.6
MD15G1313400 Malus domestica HOM05D000141 ORTHO05D004993 1.5e-15 87.0 53 77.4
Oeu012465.2 Olea europaea HOM05D000141 ORTHO05D004993 2.6e-15 86.3 68 67.6
Dinv36919 Davidia involucrata HOM05D000141 ORTHO05D004993 3.4e-15 85.9 68 67.6
Lj2A535G40 Lonicera japonica HOM05D000141 ORTHO05D004993 3.4e-15 85.9 54 81.5
VMungo1215G0183 Vigna mungo HOM05D000141 ORTHO05D004993 7.6e-15 84.7 68 66.2
Os06g0217600 Oryza sativa ssp. japonica HOM05D000141 ORTHO05D004993 9.9e-15 84.3 54 74.1
MD15G1313600 Malus domestica HOM05D000141 ORTHO05D004993 8.4e-14 81.3 60 70.0
MD15G1313500 Malus domestica HOM05D000141 ORTHO05D017607 2.8e-09 66.2 39 79.5
CBR_g8597 Chara braunii HOM05D000141 ORTHO05D004993 1.5e-07 60.5 121 33.1
Lsat_1_v5_gn_1_89581 Lactuca sativa HOM05D000041 ORTHO05D000452 6.4e-06 55.1 45 60.0


User provided reference genes

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