Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400031375 Solanum tuberosum HOM05D007103 ORTHO05D008948 1.5e-232 809.3 454 100.0
Solyc04g008560.3 Solanum lycopersicum HOM05D007103 ORTHO05D008948 9.8e-232 806.6 454 99.3
Sopen04g003720 Solanum pennellii HOM05D007103 ORTHO05D008948 6.3e-231 803.9 454 98.9
Nitab4.5_0000129g0430 Nicotiana tabacum HOM05D007103 ORTHO05D008948 7.8e-205 717.2 455 91.0
Peaxi162Scf00329g00938 Petunia axillaris HOM05D007103 ORTHO05D008948 2.3e-201 705.7 455 90.3
Nitab4.5_0007973g0020 Nicotiana tabacum HOM05D007103 ORTHO05D008948 2.9e-199 698.7 451 88.0
CAN.G458.2 Capsicum annuum HOM05D007103 ORTHO05D008948 5.2e-185 651.4 401 89.0
Lj3A854G74 Lonicera japonica HOM05D007103 ORTHO05D008948 3.8e-159 565.5 475 65.7
MSTRG.2093 Avicennia marina HOM05D007103 ORTHO05D008948 1.0e-151 540.8 457 64.6
Dinv06214 Davidia involucrata HOM05D007103 ORTHO05D008948 2.9e-151 539.3 456 67.8
GSVIVG01010248001 Vitis vinifera HOM05D007103 ORTHO05D008948 2.1e-149 533.1 466 64.8
Cfa015108 Carpinus fangiana HOM05D007103 ORTHO05D008948 4.1e-145 518.8 458 64.8
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 1.5e-144 516.9 457 61.7
Haze_01571 Corylus avellana HOM05D007103 ORTHO05D008948 2.6e-144 516.2 456 64.5
TAR371G1171 Trochodendron aralioides HOM05D007103 ORTHO05D008948 1.3e-143 513.8 458 64.2
CSS0049146 Camellia sinensis var. sinensis HOM05D007103 ORTHO05D008948 3.8e-143 512.3 446 66.6
Manes.10G065901 Manihot esculenta HOM05D007103 ORTHO05D008948 4.2e-142 508.8 459 61.0
Rhsim04G0168800 Rhododendron simsii HOM05D007103 ORTHO05D008948 1.2e-141 507.3 519 56.1
SGA_v2.0_scaffold127G33990 Striga asiatica HOM05D007103 ORTHO05D008948 1.4e-140 503.8 459 62.1
HanXRQChr14g0446891 Helianthus annuus HOM05D007103 ORTHO05D008948 1.8e-140 503.4 454 63.7
Thecc.02G296200 Theobroma cacao HOM05D007103 ORTHO05D008948 8.8e-140 501.1 461 62.0
Sed0022925 Sechium edule HOM05D007103 ORTHO05D008948 4.4e-139 498.8 459 62.5
MELO3C005211.2 Cucumis melo HOM05D007103 ORTHO05D008948 9.7e-139 497.7 459 63.2
Migut.E00576 Erythranthe guttata HOM05D007103 ORTHO05D008948 2.8e-138 496.1 482 58.3
Nn3g18722 Nelumbo nucifera HOM05D007103 ORTHO05D008948 2.8e-138 496.1 435 67.6
DCAR_030327 Daucus carota HOM05D007103 ORTHO05D008948 2.4e-137 493.0 460 62.8
CsaV3_5G017430 Cucumis sativus L. HOM05D007103 ORTHO05D008948 3.1e-137 492.7 459 61.7
Prupe.1G342500 Prunus persica HOM05D007103 ORTHO05D008948 3.1e-137 492.7 469 61.0
Eucgr.B02623 Eucalyptus grandis HOM05D007103 ORTHO05D008948 4.1e-137 492.3 457 63.9
QL03p041867 Quercus lobata HOM05D007103 ORTHO05D008948 2.6e-136 489.6 459 65.6
PGR044G1063 Punica granatum HOM05D007103 ORTHO05D008948 5.9e-136 488.4 457 60.8
unitig_8.g4025 Utricularia gibba HOM05D007103 ORTHO05D008948 8.5e-135 484.6 456 57.9
RcHm_v2.0_Chr4g0446051 Rosa chinensis HOM05D007103 ORTHO05D008948 5.5e-134 481.9 468 60.9
COL.COLO4_27515 Corchorus olitorius HOM05D007103 ORTHO05D008948 2.1e-133 479.9 450 58.0
Sabra08G0108900 Salix brachista HOM05D007103 ORTHO05D008948 2.1e-133 479.9 442 57.7
Ciclev10005118m.g Citrus clementina HOM05D007103 ORTHO05D008948 6.1e-133 478.4 396 70.5
Gohir.D01G137900 Gossypium hirsutum HOM05D007103 ORTHO05D008948 6.7e-132 474.9 460 61.3
Gorai.002G168100 Gossypium raimondii HOM05D007103 ORTHO05D008948 1.1e-131 474.2 460 61.5
Glyma.05G135400 Glycine max HOM05D007103 ORTHO05D008948 2.2e-130 469.9 459 58.8
Gohir.A01G145152 Gossypium hirsutum HOM05D007103 ORTHO05D008948 4.8e-130 468.8 461 59.9
CANSAT78G0644 Cannabis sativa HOM05D007103 ORTHO05D008948 9.1e-129 464.5 460 61.1
arahy.Tifrunner.gnm1.ann1.U7H2Z0 Arachis hypogaea HOM05D007103 ORTHO05D008948 1.3e-127 460.7 457 57.5
arahy.Tifrunner.gnm1.ann1.CDY64E Arachis hypogaea HOM05D007103 ORTHO05D008948 3.8e-127 459.1 457 57.3
THA.LOC104805941 Tarenaya hassleriana HOM05D007103 ORTHO05D008948 8.5e-127 458.0 467 59.5
CDE08G0078 Ceratophyllum demersum HOM05D007103 ORTHO05D008948 1.6e-125 453.8 459 56.0
Lsat_1_v5_gn_3_27560 Lactuca sativa HOM05D007103 ORTHO05D008948 2.7e-125 453.0 454 62.3
MD13G1010500 Malus domestica HOM05D007103 ORTHO05D008948 1.0e-124 451.1 473 56.9
HPP92_022082 Vanilla planifolia HOM05D007103 ORTHO05D008948 1.5e-123 447.2 458 56.8
vmacro08589 Vaccinium macrocarpon HOM05D007103 ORTHO05D008948 9.7e-123 444.5 342 68.7
FAN12G1264 Fragaria x ananassa HOM05D007103 ORTHO05D008948 1.3e-122 444.1 475 56.8
Potri.008G143700 Populus trichocarpa HOM05D007103 ORTHO05D008948 1.7e-122 443.7 422 56.4
FAN17G1256 Fragaria x ananassa HOM05D007103 ORTHO05D008948 2.2e-122 443.4 476 56.3
Ca_18212_v3 Cicer arietinum L. HOM05D007103 ORTHO05D008948 2.8e-122 443.0 465 55.1
FAN07G2615 Fragaria x ananassa HOM05D007103 ORTHO05D008948 4.8e-122 442.2 475 56.2
ECA246G2851 Erigeron canadensis HOM05D007103 ORTHO05D008948 1.7e-119 433.7 443 54.9
Sp2g13560 Schrenkiella parvula HOM05D007103 ORTHO05D008948 8.5e-119 431.4 471 57.5
MBI06_g12320_MAGBIO Magnolia biondii HOM05D007103 ORTHO05D008948 2.5e-118 429.9 328 68.0
PSO478G2004 Papaver somniferum HOM05D007103 ORTHO05D008948 2.5e-118 429.9 461 56.6
ATR0618G149 Amborella trichopoda HOM05D007103 ORTHO05D008948 3.2e-118 429.5 457 55.6
Psat7g086680 Pisum sativum HOM05D007103 ORTHO05D008948 9.4e-118 427.9 466 52.4
Carub.0005s0121 Capsella rubella HOM05D007103 ORTHO05D008948 3.6e-117 426.0 462 55.8
AL5G11410 Arabidopsis lyrata HOM05D007103 ORTHO05D008948 8.0e-117 424.9 465 57.4
CiPaw.05G161900 Carya illinoinensis HOM05D007103 ORTHO05D008948 5.2e-116 422.2 329 66.3
Lj4g0001083 Lotus japonicus HOM05D007103 ORTHO05D008948 8.8e-116 421.4 472 52.8
Lalb_Chr13g0293061 Lupinus albus HOM05D007103 ORTHO05D008948 7.5e-115 418.3 467 53.7
ClCG01G007020 Citrullus lanatus HOM05D007103 ORTHO05D008948 2.2e-114 416.8 341 62.5
Glyma.08G090600 Glycine max HOM05D007103 ORTHO05D008948 4.8e-114 415.6 391 59.8
Aa31LG2G7810 Aethionema arabicum HOM05D007103 ORTHO05D008948 1.1e-113 414.5 467 58.0
CARHR144820 Cardamine hirsuta HOM05D007103 ORTHO05D008948 5.4e-113 412.1 473 57.3
Actinidia32355 Actinidia chinensis HOM05D007103 ORTHO05D008948 1.6e-112 410.6 332 66.3
Aqoxy3G00022 Aquilegia oxysepala HOM05D007103 ORTHO05D008948 3.5e-112 409.5 393 61.3
AT2G02148 Arabidopsis thaliana HOM05D007103 ORTHO05D008948 3.3e-110 402.9 467 55.0
Thhalv10004194m.g Eutrema salsugineum HOM05D007103 ORTHO05D008948 7.2e-110 401.7 472 54.9
Sc03g0005470 Simmondsia chinensis HOM05D007103 ORTHO05D008948 1.8e-108 397.1 457 52.1
C09p30690 Brassica napus HOM05D007103 ORTHO05D008948 2.0e-107 393.7 463 53.8
TPR.G34765 Trifolium pratense HOM05D007103 ORTHO05D008948 2.6e-107 393.3 476 51.1
BcaC04g21529 Brassica carinata HOM05D007103 ORTHO05D008948 1.3e-106 391.0 463 54.0
AUR62003469 Chenopodium quinoa HOM05D007103 ORTHO05D008948 2.8e-106 389.8 451 50.3
BraA09t37988Z Brassica rapa HOM05D007103 ORTHO05D008948 3.7e-106 389.4 459 52.9
BcaB07g30707 Brassica carinata HOM05D007103 ORTHO05D008948 4.9e-106 389.0 470 53.2
BolC9t55934H Brassica oleracea HOM05D007103 ORTHO05D008948 5.4e-105 385.6 460 52.6
Phvul.002G186800 Phaseolus vulgaris HOM05D007103 ORTHO05D008948 5.4e-105 385.6 454 50.7
A09p23820 Brassica napus HOM05D007103 ORTHO05D008948 1.0e-103 381.3 462 52.6
Ciclev10010767m.g Citrus clementina HOM05D007103 ORTHO05D008948 2.8e-101 373.2 247 72.9
Zm00001eb228800 Zea mays HOM05D007103 ORTHO05D008948 2.4e-97 360.1 392 50.8
FvH4_4g36300 Fragaria vesca HOM05D007103 ORTHO05D008948 1.2e-96 357.8 353 54.7
AUR62017776 Chenopodium quinoa HOM05D007103 ORTHO05D008948 7.8e-96 355.1 414 50.0
SalBow2G1702 Salvia bowleyana HOM05D007103 ORTHO05D008948 1.7e-95 354.0 277 67.9
FAN22G0934 Fragaria x ananassa HOM05D007103 ORTHO05D008948 2.5e-94 350.1 415 47.7
PSO017G4620 Papaver somniferum HOM05D007103 ORTHO05D008948 2.5e-94 350.1 382 52.9
EL10Ac6g15409 Beta vulgaris HOM05D007103 ORTHO05D008948 1.5e-91 340.9 526 43.9
VMungo0251G2627 Vigna mungo HOM05D007103 ORTHO05D008948 5.4e-89 332.4 393 50.4
SEGI_34932 Sequoiadendron giganteum HOM05D007103 ORTHO05D008948 5.8e-83 312.4 293 54.3
BcaB07g30709 Brassica carinata HOM05D007103 ORTHO05D008948 1.1e-81 308.1 432 46.1
SMO358G0481 Selaginella moellendorffii HOM05D007103 ORTHO05D008948 4.4e-75 286.2 459 38.8
Actinidia25204 Actinidia chinensis HOM05D007103 ORTHO05D008948 9.2e-73 278.5 181 77.9
Atru.chr11.1054 Acer truncatum HOM05D007103 ORTHO05D008948 1.2e-69 268.1 432 45.8
Mapoly0001s0015 Marchantia polymorpha HOM05D007103 ORTHO05D008948 4.7e-69 266.2 481 39.7
Pp3c5_2140 Physcomitrium patens HOM05D007103 ORTHO05D008948 2.7e-64 250.4 488 39.8
Pp3c6_26300 Physcomitrium patens HOM05D007103 ORTHO05D008948 3.3e-62 243.4 493 39.6
Actinidia31381 Actinidia chinensis HOM05D007103 ORTHO05D008948 5.4e-57 226.1 389 48.3
CBR_g70721 Chara braunii HOM05D007103 ORTHO05D008948 2.1e-53 214.2 375 38.1
AagrBONN_evm.TU.Sc2ySwM_368.3256 Anthoceros agrestis HOM05D007103 ORTHO05D008948 9.9e-51 205.3 196 52.0
Cpa.g.sc2.105 Carica papaya HOM05D007103 ORTHO05D008948 7.1e-49 199.1 220 53.6
Medtr5g010860 Medicago truncatula HOM05D007103 ORTHO05D008948 9.6e-46 188.7 197 56.9
Pp3c6_29570 Physcomitrium patens HOM05D007103 ORTHO05D008948 5.1e-31 139.8 185 42.2
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 2.3e-23 114.4 162 47.5
CAN.G166.15 Capsicum annuum HOM05D007103 ORTHO05D008948 1.5e-22 111.7 83 69.9
Hund18263 Selenicereus undatus HOM05D007103 ORTHO05D008948 3.0e-15 87.4 185 38.9
Cpa.g.sc2.103 Carica papaya HOM05D007103 ORTHO05D008948 5.0e-10 70.1 62 56.5
Medtr6g043130 Medicago truncatula HOM05D007103 ORTHO05D008948 1.9e-09 68.2 42 73.8
Aa31LG1G6410 Aethionema arabicum HOM05D007103 ORTHO05D008948 1.2e-08 65.5 111 41.4


User provided reference genes

Program Settings