Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 1.9e-145 519.2 274 100.0
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 2.2e-130 469.2 274 91.2
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 5.5e-129 464.5 274 89.8
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 1.1e-97 360.5 296 68.6
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.3e-95 352.8 296 67.6
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 3.0e-95 352.4 296 67.9
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 3.0e-87 325.9 291 64.9
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.4e-84 316.2 298 61.7
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.2e-83 313.9 296 61.5
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 7.5e-78 294.7 297 59.3
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 7.5e-78 294.7 297 59.3
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 1.7e-77 293.5 297 58.9
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 1.9e-76 290.0 297 60.3
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 9.2e-68 261.2 299 52.5
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 3.0e-66 256.1 293 56.0
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 3.4e-62 242.7 310 50.0
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 1.2e-59 234.2 293 49.5
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 2.1e-59 233.4 284 49.3
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.7e-58 230.3 296 48.0
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 2.3e-58 229.9 284 52.1
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 1.1e-57 227.6 294 47.3
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 3.3e-57 226.1 308 49.4
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 9.6e-57 224.6 279 51.3
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 4.7e-56 222.2 295 48.1
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 4.7e-56 222.2 296 51.0
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 1.4e-55 220.7 303 48.5
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 2.4e-55 219.9 290 49.7
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 2.4e-55 219.9 288 49.7
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.5e-54 217.2 297 46.1
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 2.2e-53 213.4 270 50.0
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 6.4e-53 211.8 297 46.8
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 1.1e-52 211.1 267 49.8
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 4.2e-52 209.1 279 48.0
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 1.6e-51 207.2 296 45.6
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 2.3e-50 203.4 298 45.6
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 3.9e-50 202.6 284 47.5
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 2.5e-49 199.9 300 45.7
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 2.5e-49 199.9 300 45.7
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 3.3e-49 199.5 298 44.3
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 4.3e-49 199.1 296 43.9
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 7.3e-49 198.4 283 46.3
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 1.3e-48 197.6 273 45.8
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 3.6e-48 196.1 258 47.3
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 3.6e-48 196.1 259 47.9
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 6.2e-48 195.3 296 43.6
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 1.1e-47 194.5 293 44.7
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 2.4e-47 193.4 291 43.3
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 3.1e-47 193.0 281 44.8
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 5.3e-47 192.2 297 43.8
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 5.3e-47 192.2 295 43.1
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 6.9e-47 191.8 298 43.0
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 1.5e-46 190.7 300 43.3
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 2.6e-46 189.9 295 43.7
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 2.6e-46 189.9 292 43.8
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 4.5e-46 189.1 299 42.1
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 4.5e-46 189.1 272 46.3
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 5.8e-46 188.7 281 43.8
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 1.3e-45 187.6 278 42.8
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 1.3e-45 187.6 274 45.6
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 1.7e-45 187.2 280 43.9
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 1.4e-44 184.1 285 41.4
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 2.4e-44 183.3 284 42.6
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 3.2e-44 183.0 263 46.0
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 5.4e-44 182.2 250 46.4
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 9.3e-44 181.4 254 48.8
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 9.3e-44 181.4 278 45.3
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 9.3e-44 181.4 281 43.1
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 3.5e-43 179.5 300 40.3
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 6.0e-43 178.7 118 77.1
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 1.0e-42 177.9 299 40.8
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 1.3e-42 177.6 294 39.1
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 1.8e-42 177.2 291 41.6
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 2.3e-42 176.8 289 43.3
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 2.3e-42 176.8 249 45.0
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 2.3e-42 176.8 287 41.8
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 3.9e-42 176.0 297 40.4
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 5.1e-42 175.6 288 41.7
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 6.7e-42 175.3 292 39.4
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 6.7e-42 175.3 299 39.5
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 6.7e-42 175.3 300 42.0
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 3.3e-41 172.9 310 39.0
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 4.3e-41 172.6 326 37.1
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 4.3e-41 172.6 300 41.7
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 5.6e-41 172.2 296 39.9
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 1.3e-40 171.0 306 37.9
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.3e-40 171.0 290 40.0
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 1.3e-40 171.0 290 40.0
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.3e-40 171.0 300 41.3
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.3e-40 171.0 300 41.3
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.3e-40 171.0 274 42.3
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 1.3e-40 171.0 306 38.6
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 2.1e-40 170.2 286 39.9
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 2.1e-40 170.2 299 41.1
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 3.7e-40 169.5 283 41.3
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 4.8e-40 169.1 276 43.1
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 4.8e-40 169.1 293 40.3
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 1.8e-39 167.2 287 40.8
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 1.8e-39 167.2 291 40.9
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 3.1e-39 166.4 287 41.8
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 5.3e-39 165.6 307 37.1
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 7.6e-38 161.8 291 40.5
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 1.3e-37 161.0 299 39.8
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 3.8e-37 159.5 302 39.7
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 4.9e-37 159.1 293 40.3
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 6.4e-37 158.7 305 37.7
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 8.4e-37 158.3 279 38.7
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 8.4e-37 158.3 279 40.5
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 1.4e-36 157.5 292 39.7
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 1.4e-36 157.5 292 39.7
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 2.4e-36 156.8 292 39.7
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 1.2e-35 154.5 280 38.9
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 1.2e-35 154.5 282 35.5
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 7.9e-35 151.8 274 37.6
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 2.3e-34 150.2 274 36.5
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 3.0e-34 149.8 274 36.5
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 3.9e-34 149.4 200 47.0
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 1.9e-33 147.1 146 58.9
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 4.3e-33 146.0 294 37.8
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 4.3e-33 146.0 284 39.4
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 1.0e-29 134.8 294 36.1
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.6e-27 127.5 242 38.4
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 2.1e-27 127.1 174 46.6
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 1.8e-18 97.4 274 31.0
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 1.1e-15 88.2 158 37.3
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 1.5e-14 84.3 149 35.6
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 2.8e-08 63.5 257 25.7
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 1.8e-07 60.8 101 40.6


User provided reference genes

Program Settings