Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400031295 Solanum tuberosum HOM05D005458 ORTHO05D005672 2.2e-26 121.7 68 100.0
CAN.G1635.9 Capsicum annuum HOM05D005458 ORTHO05D005672 1.2e-16 89.4 66 80.3
Peaxi162Scf00047g00517 Petunia axillaris HOM05D005458 ORTHO05D005672 5.9e-16 87.0 66 83.3
CiPaw.01G120800 Carya illinoinensis HOM05D005458 ORTHO05D005672 1.7e-15 85.5 68 75.0
Atru.chr4.1700 Acer truncatum HOM05D005458 ORTHO05D005672 2.9e-15 84.7 57 82.5
TWI75G0430 Tripterygium wilfordii HOM05D005458 ORTHO05D005672 3.8e-15 84.3 66 80.3
Manes.15G054000 Manihot esculenta HOM05D005458 ORTHO05D005672 5.0e-15 84.0 70 74.3
Pp3c4_17970 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.1e-14 82.8 63 84.1
Thecc.01G224300 Theobroma cacao HOM05D005458 ORTHO05D005672 1.9e-14 82.0 61 80.3
Pp3c12_4180 Physcomitrium patens HOM05D005458 ORTHO05D005672 2.5e-14 81.6 63 81.0
Psat3g147360 Pisum sativum HOM05D005458 ORTHO05D005672 5.5e-14 80.5 62 80.6
Aqoxy2G03857 Aquilegia oxysepala HOM05D005458 ORTHO05D005672 9.4e-14 79.7 69 75.4
CsaV3_2G011550 Cucumis sativus L. HOM05D005458 ORTHO05D005672 9.4e-14 79.7 67 71.6
Nn1g07886 Nelumbo nucifera HOM05D005458 ORTHO05D005672 1.2e-13 79.3 67 68.7
Prupe.1G008500 Prunus persica HOM05D005458 ORTHO05D005672 1.2e-13 79.3 63 77.8
Ciclev10006390m.g Citrus clementina HOM05D005458 ORTHO05D005672 1.6e-13 79.0 67 76.1
PSO017G2416 Papaver somniferum HOM05D005458 ORTHO05D005672 2.1e-13 78.6 67 74.6
PSO063G0044 Papaver somniferum HOM05D005458 ORTHO05D005672 2.1e-13 78.6 67 74.6
Potri.014G056600 Populus trichocarpa HOM05D005458 ORTHO05D005672 2.1e-13 78.6 61 77.0
Lalb_Chr01g0022281 Lupinus albus HOM05D005458 ORTHO05D005672 2.7e-13 78.2 66 78.8
GSVIVG01021052001 Vitis vinifera HOM05D005458 ORTHO05D005672 3.6e-13 77.8 70 71.4
CANSAT11G1273 Cannabis sativa HOM05D005458 ORTHO05D005672 4.7e-13 77.4 68 70.6
Ca_17417_v3 Cicer arietinum L. HOM05D005458 ORTHO05D005672 6.1e-13 77.0 62 79.0
Potri.017G055501 Populus trichocarpa HOM05D005458 ORTHO05D005672 6.1e-13 77.0 67 71.6
Lsat_1_v5_gn_6_60280 Lactuca sativa HOM05D005458 ORTHO05D005672 1.0e-12 76.3 68 73.5
Sc19g0007160 Simmondsia chinensis HOM05D005458 ORTHO05D005672 1.4e-12 75.9 63 73.0
FvH4_4g16450 Fragaria vesca HOM05D005458 ORTHO05D005672 1.8e-12 75.5 69 73.9
Glyma.08G351700 Glycine max HOM05D005458 ORTHO05D005672 4.0e-12 74.3 60 75.0
ECA248G3568 Erigeron canadensis HOM05D000609 ORTHO05D000462 5.2e-12 73.9 58 77.6
Pp3c13_10560 Physcomitrium patens HOM05D005458 ORTHO05D005672 5.2e-12 73.9 67 73.1
Sc05g0002070 Simmondsia chinensis HOM05D005458 ORTHO05D005672 6.8e-12 73.6 68 72.1
TPR.G14533 Trifolium pratense HOM05D005458 ORTHO05D005672 1.2e-11 72.8 64 73.4
GSVIVG01003386001 Vitis vinifera HOM05D005458 ORTHO05D005672 1.2e-11 72.8 58 74.1
ATR1145G024 Amborella trichopoda HOM05D005458 ORTHO05D005672 1.5e-11 72.4 58 79.3
Phvul.008G127837 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 2.0e-11 72.0 61 75.4
Lalb_Chr19g0125681 Lupinus albus HOM05D005458 ORTHO05D005672 2.6e-11 71.6 66 74.2
AT4G13615 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 3.4e-11 71.2 48 83.3
Medtr7g056410 Medicago truncatula HOM05D005458 ORTHO05D005672 3.4e-11 71.2 56 80.4
EL10Ac3g07484 Beta vulgaris HOM05D005458 ORTHO05D005672 4.4e-11 70.9 66 69.7
Mapoly0075s0018 Marchantia polymorpha HOM05D005458 ORTHO05D005672 4.4e-11 70.9 71 69.0
ClCG06G007830 Citrullus lanatus HOM05D005458 ORTHO05D005672 5.7e-11 70.5 54 79.6
Lj1g0002931 Lotus japonicus HOM05D005458 ORTHO05D005672 7.5e-11 70.1 61 68.9
Phvul.010G019701 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 7.5e-11 70.1 61 73.8
AT3G24100 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 9.8e-11 69.7 49 81.6
Migut.D02491 Erythranthe guttata HOM05D005458 ORTHO05D005672 9.8e-11 69.7 58 72.4
Gorai.004G226200 Gossypium raimondii HOM05D005458 ORTHO05D005672 1.3e-10 69.3 69 66.7
Hma1.2p1_1407F.1_g281420 Hydrangea macrophylla HOM05D000434 ORTHO05D005672 1.3e-10 69.3 53 77.4
Hund16751 Selenicereus undatus HOM05D005458 ORTHO05D005672 1.3e-10 69.3 69 69.6
Gohir.A07G157232 Gossypium hirsutum HOM05D005458 ORTHO05D005672 2.2e-10 68.6 50 84.0
arahy.Tifrunner.gnm1.ann1.XWTR79 Arachis hypogaea HOM05D005458 ORTHO05D005672 2.8e-10 68.2 46 87.0
Pp3c12_4160 Physcomitrium patens HOM05D005458 ORTHO05D005672 2.8e-10 68.2 59 72.9
Zm00001eb287790 Zea mays HOM05D005458 ORTHO05D005672 2.8e-10 68.2 67 65.7
Cpa.g.sc2154.1 Carica papaya HOM05D005458 ORTHO05D005672 3.7e-10 67.8 55 74.5
Thhalv10026730m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 4.8e-10 67.4 47 80.9
Duzib211G0320 Durio zibethinus HOM05D005458 ORTHO05D005672 6.3e-10 67.0 48 81.2
Gohir.D07G163401 Gossypium hirsutum HOM05D005458 ORTHO05D005672 6.3e-10 67.0 49 83.7
Gohir.D07G207100 Gossypium hirsutum HOM05D005458 ORTHO05D005672 6.3e-10 67.0 48 81.2
Gorai.001G187200 Gossypium raimondii HOM05D005458 ORTHO05D005672 6.3e-10 67.0 49 83.7
Gorai.001G233500 Gossypium raimondii HOM05D005458 ORTHO05D005672 6.3e-10 67.0 48 81.2
Manes.12G045600 Manihot esculenta HOM05D005458 ORTHO05D005672 8.3e-10 66.6 55 76.4
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 1.1e-09 66.2 67 65.7
A04p08570 Brassica napus HOM05D005458 ORTHO05D005672 1.1e-09 66.2 47 80.9
BolC4t25811H Brassica oleracea HOM05D005458 ORTHO05D005672 1.1e-09 66.2 47 80.9
BraA04t16551Z Brassica rapa HOM05D005458 ORTHO05D005672 1.1e-09 66.2 47 80.9
CARHR219300 Cardamine hirsuta HOM05D005458 ORTHO05D005672 1.1e-09 66.2 48 77.1
Prupe.8G201600 Prunus persica HOM05D005458 ORTHO05D005672 1.1e-09 66.2 62 67.7
AL7G42970 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 1.4e-09 65.9 47 78.7
Carub.0003s2440 Capsella rubella HOM05D005458 ORTHO05D005672 1.8e-09 65.5 48 79.2
CARHR100100 Cardamine hirsuta HOM05D005458 ORTHO05D005672 1.8e-09 65.5 47 80.9
Duzib133G0368 Durio zibethinus HOM05D005458 ORTHO05D005672 1.8e-09 65.5 48 81.2
Eucgr.H00051 Eucalyptus grandis HOM05D005458 ORTHO05D005672 1.8e-09 65.5 68 63.2
FAN07G0843 Fragaria x ananassa HOM05D005458 ORTHO05D005672 1.8e-09 65.5 64 71.9
Rhsim02G0057300 Rhododendron simsii HOM05D005458 ORTHO05D005672 1.8e-09 65.5 51 76.5
Potri.001G315400 Populus trichocarpa HOM05D005458 ORTHO05D005672 2.4e-09 65.1 48 83.3
Carub.0007s2961 Capsella rubella HOM05D005458 ORTHO05D005672 3.1e-09 64.7 60 65.0
Thhalv10026728m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 3.1e-09 64.7 60 65.0
PGR142G1434 Punica granatum HOM05D005458 ORTHO05D005672 3.1e-09 64.7 47 78.7
Haze_24813 Corylus avellana HOM05D005458 ORTHO05D005672 4.1e-09 64.3 58 70.7
AL3G39170 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 5.4e-09 63.9 47 78.7
Os05g0407100 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 5.4e-09 63.9 57 70.2
Cc03_g07880 Coffea canephora HOM05D005458 ORTHO05D005672 7.0e-09 63.5 58 72.4
MELO3C020447.2 Cucumis melo HOM05D005458 ORTHO05D005672 7.0e-09 63.5 46 82.6
Duzib138G0965 Durio zibethinus HOM05D005458 ORTHO05D005672 7.0e-09 63.5 48 77.1
Cpa.g.sc8.142 Carica papaya HOM05D005458 ORTHO05D005672 9.1e-09 63.2 48 77.1
BcaC02g09406 Brassica carinata HOM05D016886 ORTHO05D005672 1.2e-08 62.8 44 81.8
Peaxi162Scf00594g00523 Petunia axillaris HOM05D005458 ORTHO05D005672 1.6e-08 62.4 56 69.6
Hund27148 Selenicereus undatus HOM05D005458 ORTHO05D005672 1.6e-08 62.4 58 70.7
BcaB04g17662 Brassica carinata HOM05D005458 ORTHO05D005672 2.7e-08 61.6 44 79.5
MD04G1009100 Malus domestica HOM05D005458 ORTHO05D005672 3.5e-08 61.2 55 72.7
DCAR_018640 Daucus carota HOM05D001184 ORTHO05D003397 4.5e-08 60.8 45 82.2
Lsat_1_v5_gn_8_89780 Lactuca sativa HOM05D005458 ORTHO05D005672 4.5e-08 60.8 60 65.0
Manes.03G147401 Manihot esculenta HOM05D005458 ORTHO05D005672 5.9e-08 60.5 71 62.0
Aa31LG9G4840 Aethionema arabicum HOM05D002547 ORTHO05D002649 7.7e-08 60.1 58 63.8
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 7.7e-08 60.1 51 74.5
FAN15G3619 Fragaria x ananassa HOM05D005458 ORTHO05D005672 1.0e-07 59.7 63 65.1
Sp7g11280 Schrenkiella parvula HOM05D017066 ORTHO05D005672 1.0e-07 59.7 42 81.0
Migut.N00389 Erythranthe guttata HOM05D005458 ORTHO05D005672 1.3e-07 59.3 68 61.8
Thhalv10002785m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 2.3e-07 58.5 44 77.3
Glyma.18G164200 Glycine max HOM05D005458 ORTHO05D005672 2.3e-07 58.5 63 60.3
unitig_736.g22466 Utricularia gibba HOM05D005458 ORTHO05D005672 2.3e-07 58.5 46 76.1
VMungo0331G1336 Vigna mungo HOM05D005458 ORTHO05D005672 2.3e-07 58.5 59 67.8
EL10Ac1g00186 Beta vulgaris HOM05D005458 ORTHO05D005672 2.9e-07 58.2 45 80.0
COL.COLO4_12105 Corchorus olitorius HOM05D001094 ORTHO05D001050 2.9e-07 58.2 42 83.3
Lalb_Chr07g0194291 Lupinus albus HOM05D005458 ORTHO05D005672 2.9e-07 58.2 58 65.5
MD05G1174200 Malus domestica HOM05D005458 ORTHO05D005672 2.9e-07 58.2 64 60.9
Gohir.A08G195125 Gossypium hirsutum HOM05D005458 ORTHO05D005672 3.8e-07 57.8 47 76.6
arahy.Tifrunner.gnm1.ann1.AN5TC9 Arachis hypogaea HOM05D005458 ORTHO05D005672 5.0e-07 57.4 47 74.5
VMungo1383G3675 Vigna mungo HOM05D005458 ORTHO05D000001 5.0e-07 57.4 61 62.3
arahy.Tifrunner.gnm1.ann1.U1G5UA Arachis hypogaea HOM05D005458 ORTHO05D005672 8.6e-07 56.6 40 85.0
THA.LOC104804811 Tarenaya hassleriana HOM05D005458 ORTHO05D005672 8.6e-07 56.6 67 56.7
Aa31LG9G4030 Aethionema arabicum HOM05D005458 ORTHO05D005672 1.1e-06 56.2 43 74.4
arahy.Tifrunner.gnm1.ann1.58ZGJB Arachis hypogaea HOM05D005458 ORTHO05D005672 1.1e-06 56.2 46 73.9
ClCG09G008920 Citrullus lanatus HOM05D001590 ORTHO05D005672 1.5e-06 55.8 50 74.0
CiPaw.03G148500 Carya illinoinensis HOM05D005458 ORTHO05D005672 1.9e-06 55.5 61 62.3
C08p07830 Brassica napus HOM05D005458 ORTHO05D005672 4.2e-06 54.3 40 77.5
BolC8t47637H Brassica oleracea HOM05D005458 ORTHO05D005672 4.2e-06 54.3 40 77.5
Aa31LG8G10780 Aethionema arabicum HOM05D005458 ORTHO05D005672 9.5e-06 53.1 65 56.9
Zm00001eb356280 Zea mays HOM05D005458 ORTHO05D005672 9.5e-06 53.1 43 72.1


User provided reference genes

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