Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400031208 Solanum tuberosum HOM05D006130 ORTHO05D007491 7.2e-201 703.7 369 100.0
Solyc04g051780.3 Solanum lycopersicum HOM05D006130 ORTHO05D007491 7.0e-188 660.6 369 91.3
Sopen04g023130 Solanum pennellii HOM05D006130 ORTHO05D007491 9.8e-182 640.2 369 91.3
CAN.G347.1 Capsicum annuum HOM05D006130 ORTHO05D007491 7.8e-179 630.6 369 85.1
Nitab4.5_0015691g0010 Nicotiana tabacum HOM05D006130 ORTHO05D007491 6.4e-157 557.8 372 76.9
Nitab4.5_0004840g0040 Nicotiana tabacum HOM05D006130 ORTHO05D007491 5.3e-151 538.1 365 77.5
Peaxi162Scf00106g00208 Petunia axillaris HOM05D006130 ORTHO05D007491 4.0e-143 511.9 366 72.7
Dinv42687 Davidia involucrata HOM05D006130 ORTHO05D007491 5.0e-117 425.2 377 58.9
Dinv19481 Davidia involucrata HOM05D006130 ORTHO05D007491 3.6e-115 419.1 377 60.2
Cc07_g16320 Coffea canephora HOM05D006130 ORTHO05D007491 2.9e-109 399.4 375 56.3
Rhsim08G0006100 Rhododendron simsii HOM05D006130 ORTHO05D007491 2.9e-109 399.4 376 55.6
Oeu028522.1 Olea europaea HOM05D006130 ORTHO05D007491 1.4e-108 397.1 373 55.5
QL06p031976 Quercus lobata HOM05D006130 ORTHO05D007491 5.5e-108 395.2 373 55.2
Cpa.g.sc191.11 Carica papaya HOM05D006130 ORTHO05D007491 4.4e-105 385.6 376 52.9
Ciclev10026167m.g Citrus clementina HOM05D006130 ORTHO05D007491 1.7e-104 383.6 376 56.6
Haze_25050 Corylus avellana HOM05D006130 ORTHO05D007491 2.8e-104 382.9 375 53.3
Prupe.6G171600 Prunus persica HOM05D006130 ORTHO05D007491 4.8e-104 382.1 373 55.0
Lj2C566T4 Lonicera japonica HOM05D006130 ORTHO05D007491 1.1e-103 380.9 377 54.6
FAN23G0816 Fragaria x ananassa HOM05D006130 ORTHO05D007491 1.8e-103 380.2 376 52.9
MBI05_g29098_MAGBIO Magnolia biondii HOM05D006130 ORTHO05D007491 2.4e-103 379.8 378 51.3
FAN19G1269 Fragaria x ananassa HOM05D006130 ORTHO05D007491 5.3e-103 378.6 376 52.9
FAN26G2148 Fragaria x ananassa HOM05D006130 ORTHO05D007491 1.3e-101 374.0 372 52.7
Atru.chr4.339 Acer truncatum HOM05D006130 ORTHO05D007491 2.9e-101 372.9 381 53.3
MD15G1331600 Malus domestica HOM05D006130 ORTHO05D007491 3.8e-101 372.5 368 53.0
Thecc.01G113900 Theobroma cacao HOM05D006130 ORTHO05D007491 5.5e-100 368.6 379 50.7
TWI74G0604 Tripterygium wilfordii HOM05D006130 ORTHO05D007491 2.7e-99 366.3 374 52.9
GSVIVG01022236001 Vitis vinifera HOM05D006130 ORTHO05D007491 2.7e-99 366.3 371 53.6
Migut.L00069 Erythranthe guttata HOM05D006130 ORTHO05D007491 4.7e-99 365.5 377 53.1
RcHm_v2.0_Chr2g0117041 Rosa chinensis HOM05D006130 ORTHO05D007491 4.7e-99 365.5 376 51.3
Cfa002758 Carpinus fangiana HOM05D006130 ORTHO05D007491 8.0e-99 364.8 377 52.0
CiPaw.04G091300 Carya illinoinensis HOM05D006130 ORTHO05D007491 1.0e-98 364.4 379 51.2
MSTRG.15753 Avicennia marina HOM05D006130 ORTHO05D007491 1.8e-98 363.6 376 52.4
Manes.12G143200 Manihot esculenta HOM05D006130 ORTHO05D007491 5.2e-98 362.1 376 50.5
Nn5g28889 Nelumbo nucifera HOM05D006130 ORTHO05D007491 1.2e-97 360.9 386 50.5
PGR102G0730 Punica granatum HOM05D006130 ORTHO05D007491 9.7e-97 357.8 379 53.8
Duzib264G0573 Durio zibethinus HOM05D006130 ORTHO05D007491 1.7e-96 357.1 381 49.1
ECA238G3253 Erigeron canadensis HOM05D006130 ORTHO05D007491 2.2e-96 356.7 375 51.5
CANSAT80G2857 Cannabis sativa HOM05D006130 ORTHO05D007491 4.8e-96 355.5 376 50.3
Eucgr.H04843 Eucalyptus grandis HOM05D006130 ORTHO05D007491 6.3e-96 355.1 373 50.4
Aqoxy7G04042 Aquilegia oxysepala HOM05D006130 ORTHO05D007491 1.2e-94 350.9 379 50.9
Gorai.007G244700 Gossypium raimondii HOM05D006130 ORTHO05D007491 5.9e-94 348.6 384 47.7
Gohir.A11G197900 Gossypium hirsutum HOM05D006130 ORTHO05D007491 3.8e-93 345.9 385 48.1
Duzib147G1554 Durio zibethinus HOM05D006130 ORTHO05D007491 5.0e-93 345.5 351 50.7
PSO210G3121 Papaver somniferum HOM05D006130 ORTHO05D007491 6.5e-93 345.1 373 49.9
Gohir.D11G231600 Gossypium hirsutum HOM05D006130 ORTHO05D007491 1.5e-92 344.0 385 48.6
vmacro18637 Vaccinium macrocarpon HOM05D006130 ORTHO05D007491 3.2e-92 342.8 354 52.3
Sabra07G0067600 Salix brachista HOM05D006130 ORTHO05D007491 5.5e-92 342.0 374 48.7
Lalb_Chr11g0068091 Lupinus albus HOM05D006130 ORTHO05D007491 7.2e-92 341.7 378 48.1
Potri.007G080500 Populus trichocarpa HOM05D006130 ORTHO05D007491 7.2e-92 341.7 375 48.0
PSO170G1695 Papaver somniferum HOM05D006130 ORTHO05D007491 1.6e-91 340.5 373 50.1
MELO3C025043.2 Cucumis melo HOM05D006130 ORTHO05D007491 4.7e-91 339.0 375 46.4
CsaV3_6G002440 Cucumis sativus L. HOM05D006130 ORTHO05D007491 1.0e-90 337.8 375 46.1
DCAR_001374 Daucus carota HOM05D006130 ORTHO05D007491 2.6e-89 333.2 421 44.7
ClCG11G005560 Citrullus lanatus HOM05D006130 ORTHO05D007491 3.4e-89 332.8 379 48.0
EL10Ac6g14758 Beta vulgaris HOM05D006130 ORTHO05D007491 5.7e-89 332.0 378 49.5
SalBow5G2487 Salvia bowleyana HOM05D006130 ORTHO05D007491 7.5e-89 331.6 375 50.4
Lsat_1_v5_gn_2_67140 Lactuca sativa HOM05D006130 ORTHO05D007491 9.8e-89 331.3 372 48.9
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 9.8e-89 331.3 372 48.9
HanXRQChr14g0445741 Helianthus annuus HOM05D006130 ORTHO05D007491 1.1e-87 327.8 367 49.9
Hund03536 Selenicereus undatus HOM05D006130 ORTHO05D007491 5.4e-87 325.5 391 47.1
AUR62016283 Chenopodium quinoa HOM05D006130 ORTHO05D007491 9.1e-87 324.7 387 48.3
Sed0017229 Sechium edule HOM05D006130 ORTHO05D007491 9.1e-87 324.7 375 45.6
SEGI_25559 Sequoiadendron giganteum HOM05D006130 ORTHO05D007491 2.0e-86 323.6 395 44.1
Aa31LG1G17100 Aethionema arabicum HOM05D006130 ORTHO05D007491 2.7e-86 323.2 367 48.8
Glyma.04G218800 Glycine max HOM05D006130 ORTHO05D007491 7.7e-86 321.6 376 47.6
Lj1g0022742 Lotus japonicus HOM05D006130 ORTHO05D007491 2.9e-85 319.7 386 45.9
CDE09G1360 Ceratophyllum demersum HOM05D006130 ORTHO05D007491 1.9e-84 317.0 392 46.7
Phvul.009G139000 Phaseolus vulgaris HOM05D006130 ORTHO05D007491 1.9e-84 317.0 380 46.3
THA.LOC104818474 Tarenaya hassleriana HOM05D006130 ORTHO05D007491 2.5e-84 316.6 394 46.4
TPR.G23729 Trifolium pratense HOM05D006130 ORTHO05D007491 5.5e-84 315.5 386 43.8
Eucgr.H04852 Eucalyptus grandis HOM05D006130 ORTHO05D007491 1.2e-83 314.3 366 46.7
Psat5g066000 Pisum sativum HOM05D006130 ORTHO05D007491 2.1e-83 313.5 386 45.6
Sp2g27910 Schrenkiella parvula HOM05D006130 ORTHO05D007491 2.1e-83 313.5 374 50.5
Thhalv10004393m.g Eutrema salsugineum HOM05D006130 ORTHO05D007491 8.0e-83 311.6 388 47.9
AUR62003302 Chenopodium quinoa HOM05D006130 ORTHO05D007491 1.0e-82 311.2 389 48.6
Ca_16897_v3 Cicer arietinum L. HOM05D006130 ORTHO05D007491 3.0e-82 309.7 381 44.1
AL8G42310 Arabidopsis lyrata HOM05D006130 ORTHO05D007491 1.5e-81 307.4 376 52.7
Os04g0640800 Oryza sativa ssp. japonica HOM05D006130 ORTHO05D007491 2.0e-81 307.0 373 44.8
SGA_v2.0_scaffold47G17703 Striga asiatica HOM05D006130 ORTHO05D007491 2.0e-81 307.0 378 48.7
FvH4_1g22740 Fragaria vesca HOM05D006130 ORTHO05D007491 4.4e-81 305.8 318 51.6
ATR0665G503 Amborella trichopoda HOM05D006130 ORTHO05D007491 5.7e-81 305.4 385 42.9
Medtr3g095020 Medicago truncatula HOM05D006130 ORTHO05D007491 7.5e-81 305.1 386 47.2
Carub.0008s2566 Capsella rubella HOM05D006130 ORTHO05D007491 1.7e-80 303.9 374 50.3
Zm00001eb431860 Zea mays HOM05D006130 ORTHO05D007491 2.2e-80 303.5 373 43.7
VMungo1309G1738 Vigna mungo HOM05D006130 ORTHO05D007491 4.9e-80 302.4 356 47.5
C03p61330 Brassica napus HOM05D006130 ORTHO05D007491 8.3e-80 301.6 384 49.5
BcaC01g02716 Brassica carinata HOM05D006130 ORTHO05D007491 3.5e-78 296.2 384 49.0
CARHR278840 Cardamine hirsuta HOM05D006130 ORTHO05D007491 4.5e-78 295.8 374 49.7
BraA06t26099Z Brassica rapa HOM05D006130 ORTHO05D007491 6.6e-77 292.0 373 51.5
HPP92_016462 Vanilla planifolia HOM05D006130 ORTHO05D007491 5.6e-76 288.9 375 42.4
Eucgr.H04859 Eucalyptus grandis HOM05D006130 ORTHO05D007491 9.5e-76 288.1 364 44.2
A06p31630 Brassica napus HOM05D006130 ORTHO05D007491 1.6e-75 287.3 375 50.4
SMO358G0378 Selaginella moellendorffii HOM05D006130 ORTHO05D007491 2.1e-75 287.0 397 40.3
HPP92_027147 Vanilla planifolia HOM05D006130 ORTHO05D007491 2.8e-75 286.6 368 42.7
BolC3t18393H Brassica oleracea HOM05D006130 ORTHO05D007491 3.6e-75 286.2 375 50.4
BcaB02g09834 Brassica carinata HOM05D006130 ORTHO05D007491 1.8e-74 283.9 375 49.6
arahy.Tifrunner.gnm1.ann1.JIC903 Arachis hypogaea HOM05D006130 ORTHO05D007491 2.6e-73 280.0 376 41.2
Hma1.2p1_0375F.1_g138770 Hydrangea macrophylla HOM05D006130 ORTHO05D007491 1.3e-72 277.7 304 50.7
GSVIVG01022231001 Vitis vinifera HOM05D006130 ORTHO05D007491 1.9e-71 273.9 368 42.7
arahy.Tifrunner.gnm1.ann1.S5QZ0Z Arachis hypogaea HOM05D006130 ORTHO05D007491 3.2e-71 273.1 376 40.4
unitig_62.g23431 Utricularia gibba HOM05D006130 ORTHO05D007491 9.2e-71 271.6 374 44.4
Eucgr.H04856 Eucalyptus grandis HOM05D006130 ORTHO05D007491 1.2e-70 271.2 368 43.8
TAR628G0645 Trochodendron aralioides HOM05D006130 ORTHO05D007491 8.6e-69 265.0 280 51.8
Ah.14g080600 Amaranthus hybridus HOM05D006130 ORTHO05D007491 3.6e-67 259.6 353 43.9
Actinidia12211 Actinidia chinensis HOM05D006130 ORTHO05D007491 1.4e-66 257.7 262 53.4
Eucgr.H04846 Eucalyptus grandis HOM05D006130 ORTHO05D007491 2.0e-65 253.8 345 43.8
Pp3c16_16240 Physcomitrium patens HOM05D006130 ORTHO05D007491 3.4e-65 253.1 412 36.7
Mapoly0014s0114 Marchantia polymorpha HOM05D006130 ORTHO05D007491 3.9e-61 239.6 408 36.0
Ah.03g141370 Amaranthus hybridus HOM05D006130 ORTHO05D007491 2.1e-59 233.8 386 40.4
Sc03g0004370 Simmondsia chinensis HOM05D006130 ORTHO05D007491 5.2e-58 229.2 278 51.1
CSS0050489 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.4e-57 226.5 171 62.0
Glyma.06G147000 Glycine max HOM05D006130 ORTHO05D007491 3.3e-52 209.9 203 54.7
Eucgr.H04861 Eucalyptus grandis HOM05D006130 ORTHO05D007491 1.9e-47 194.1 171 56.1
COL.COLO4_11003 Corchorus olitorius HOM05D006130 ORTHO05D007491 3.2e-47 193.4 372 32.5
AT5G64830 Arabidopsis thaliana HOM05D006130 ORTHO05D007491 9.6e-44 181.8 282 48.6
CBR_g30690 Chara braunii HOM05D006130 ORTHO05D007491 9.0e-42 175.3 488 29.1
AagrBONN_evm.TU.Sc2ySwM_228.1847 Anthoceros agrestis HOM05D006130 ORTHO05D007491 1.1e-34 151.8 146 50.7
SGA_v2.0_scaffold34G13625 Striga asiatica HOM05D006130 ORTHO05D007491 9.0e-26 122.1 88 63.6
MCO11G927 Micromonas commoda HOM05D006130 ORTHO05D007491 7.6e-25 119.0 442 27.4
AagrBONN_evm.TU.Sc2ySwM_228.1848 Anthoceros agrestis HOM05D006130 ORTHO05D007491 7.9e-22 109.0 87 52.9
Actinidia35264 Actinidia chinensis HOM05D006130 ORTHO05D007491 2.3e-21 107.5 87 62.1
Pp3c22_7380 Physcomitrium patens HOM05D005189 ORTHO05D006093 1.0e-13 82.0 397 24.9
Cre14.g608500 Chlamydomonas reinhardtii HOM05D006130 ORTHO05D007491 7.4e-12 75.9 138 31.2
SGA_v2.0_scaffold32G12965 Striga asiatica HOM05D006130 ORTHO05D007491 9.7e-12 75.5 79 50.6
PRCOL_00001898 Prasinoderma coloniale HOM05D006130 ORTHO05D007491 2.4e-10 70.9 183 31.1
DCAR_005781 Daucus carota HOM05D005189 ORTHO05D006093 5.3e-10 69.7 368 25.8
CSS0031632 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 2.0e-09 67.8 352 24.4
HanXRQChr04g0111211 Helianthus annuus HOM05D005189 ORTHO05D006093 5.9e-09 66.2 371 24.5
PSO782G1813 Papaver somniferum HOM05D005189 ORTHO05D006093 5.9e-09 66.2 343 25.9
SalBow6G1077 Salvia bowleyana HOM05D005189 ORTHO05D006093 5.9e-09 66.2 351 25.1
Sc05g0003490 Simmondsia chinensis HOM05D005189 ORTHO05D006093 2.2e-08 64.3 346 25.4
AL6G50910 Arabidopsis lyrata HOM05D005189 ORTHO05D006093 2.9e-08 63.9 373 27.1
AT4G02220 Arabidopsis thaliana HOM05D005189 ORTHO05D006093 2.9e-08 63.9 366 26.2
DCAR_006919 Daucus carota HOM05D005189 ORTHO05D006093 3.8e-08 63.5 367 24.8
BcaB01g02068 Brassica carinata HOM05D005189 ORTHO05D006093 5.0e-08 63.2 347 24.2
CSS0046497 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 5.0e-08 63.2 352 23.6
Cre03.g149500 Chlamydomonas reinhardtii HOM05D005189 ORTHO05D006093 5.0e-08 63.2 148 34.5
Manes.03G058600 Manihot esculenta HOM05D005189 ORTHO05D006093 3.2e-07 60.5 350 23.7
Atru.chr5.1082 Acer truncatum HOM05D005189 ORTHO05D006093 4.2e-07 60.1 375 25.3
Manes.05G000401 Manihot esculenta HOM05D005189 ORTHO05D006093 4.2e-07 60.1 350 24.0
PSO765G0055 Papaver somniferum HOM05D005189 ORTHO05D006093 4.2e-07 60.1 343 25.1
Pp3c25_650 Physcomitrium patens HOM05D005189 ORTHO05D006093 4.2e-07 60.1 359 23.1
GSVIVG01028059001 Vitis vinifera HOM05D005189 ORTHO05D006093 4.2e-07 60.1 343 24.8
CsaV3_1G042140 Cucumis sativus L. HOM05D005189 ORTHO05D006093 5.5e-07 59.7 367 23.7
HanXRQChr04g0114701 Helianthus annuus HOM05D005189 ORTHO05D006093 5.5e-07 59.7 355 25.6
HanXRQChr08g0218711 Helianthus annuus HOM05D006130 ORTHO05D007491 5.5e-07 59.7 53 50.9
Migut.D00121 Erythranthe guttata HOM05D005189 ORTHO05D006093 7.2e-07 59.3 353 22.9
unitig_22.g5230 Utricularia gibba HOM05D005189 ORTHO05D006093 9.4e-07 58.9 346 22.5
Thhalv10028689m.g Eutrema salsugineum HOM05D005189 ORTHO05D006093 1.2e-06 58.5 355 24.2
Rhsim01G0287800 Rhododendron simsii HOM05D005189 ORTHO05D006093 1.2e-06 58.5 361 24.7
SGA_v2.0_scaffold334G49031 Striga asiatica HOM05D000141 ORTHO05D000780 1.2e-06 58.5 355 25.4
Rhsim13G0007900 Rhododendron simsii HOM05D005189 ORTHO05D006093 1.6e-06 58.2 343 23.6
CBR_g22284 Chara braunii HOM05D005189 ORTHO05D006093 2.1e-06 57.8 441 24.5
Zm00001eb367030 Zea mays HOM05D006130 ORTHO05D007491 2.1e-06 57.8 42 64.3
Eucgr.D00338 Eucalyptus grandis HOM05D005189 ORTHO05D006093 4.6e-06 56.6 350 27.4
Oeu028521.1 Olea europaea HOM05D006130 ORTHO05D007491 7.9e-06 55.8 31 77.4


User provided reference genes

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