Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400031207 Solanum tuberosum HOM05D017188 ORTHO05D008048 4.0e-71 271.6 160 100.0
Nitab4.5_0004977g0060 Nicotiana tabacum HOM05D017188 ORTHO05D008048 4.7e-40 168.3 164 67.1
Solyc04g051720.3 Solanum lycopersicum HOM05D017188 ORTHO05D008048 5.6e-33 144.8 80 91.2
Peaxi162Scf00106g01716 Petunia axillaris HOM05D017188 ORTHO05D008048 3.4e-30 135.6 146 56.2
Nitab4.5_0004378g0030 Nicotiana tabacum HOM05D017188 ORTHO05D008048 4.9e-21 105.1 144 42.4
Nitab4.5_0000818g0160 Nicotiana tabacum HOM05D017188 ORTHO05D008048 6.4e-21 104.8 144 45.8
CAN.G344.9 Capsicum annuum HOM05D017188 ORTHO05D008048 1.4e-20 103.6 80 70.0
Dinv19478 Davidia involucrata HOM05D008407 ORTHO05D008048 8.7e-18 94.4 146 41.8
FAN28G0580 Fragaria x ananassa HOM05D008407 ORTHO05D008048 2.8e-16 89.4 140 40.0
FvH4_1g22760 Fragaria vesca HOM05D008407 ORTHO05D008048 8.2e-16 87.8 140 39.3
FAN19G0490 Fragaria x ananassa HOM05D008407 ORTHO05D008048 8.2e-16 87.8 140 39.3
FAN26G1845 Fragaria x ananassa HOM05D008407 ORTHO05D008048 8.2e-16 87.8 140 39.3
FAN23G0665 Fragaria x ananassa HOM05D008407 ORTHO05D008048 1.1e-15 87.4 140 38.6
Peaxi162Scf00167g00512 Petunia axillaris HOM05D017188 ORTHO05D008048 3.1e-15 85.9 111 48.6
Hma1.2p1_0375F.1_g138780 Hydrangea macrophylla HOM05D008407 ORTHO05D008048 4.0e-15 85.5 120 47.5
RcHm_v2.0_Chr2g0117081 Rosa chinensis HOM05D008407 ORTHO05D008048 6.9e-15 84.7 142 38.0
QL06p031965 Quercus lobata HOM05D008407 ORTHO05D008048 2.5e-12 76.3 143 35.7
TWI79G0560 Tripterygium wilfordii HOM05D008407 ORTHO05D008048 3.2e-12 75.9 140 38.6
Medtr4g005500 Medicago truncatula HOM05D014935 ORTHO05D008048 5.5e-12 75.1 136 38.2
Prupe.6G170400 Prunus persica HOM05D008407 ORTHO05D008048 5.5e-12 75.1 137 38.7
TWI12G0637 Tripterygium wilfordii HOM05D009551 ORTHO05D008048 2.7e-11 72.8 134 35.8
Sabra05G0069800 Salix brachista HOM05D008407 ORTHO05D008048 3.5e-11 72.4 140 36.4
MD01G1020600 Malus domestica HOM05D008407 ORTHO05D008048 7.9e-11 71.2 158 34.2
CiPaw.03G133800 Carya illinoinensis HOM05D008407 ORTHO05D008048 1.3e-10 70.5 103 43.7
Lj4g0011503 Lotus japonicus HOM05D008407 ORTHO05D008048 1.3e-10 70.5 142 36.6
Haze_25053 Corylus avellana HOM05D008407 ORTHO05D008048 3.0e-10 69.3 139 31.7
Atru.chr1.2734 Acer truncatum HOM05D009551 ORTHO05D008048 3.9e-10 68.9 84 48.8
TPR.G38723 Trifolium pratense HOM05D014935 ORTHO05D008048 3.9e-10 68.9 142 35.2
Psat7g050960 Pisum sativum HOM05D008407 ORTHO05D008048 8.7e-10 67.8 133 34.6
Prupe.3G021100 Prunus persica HOM05D019125 ORTHO05D022577 1.5e-09 67.0 135 37.8
ClCG01G016050 Citrullus lanatus HOM05D008407 ORTHO05D008048 1.9e-09 66.6 112 36.6
Thhalv10008985m.g Eutrema salsugineum HOM05D009551 ORTHO05D008048 2.5e-09 66.2 67 52.2
Cpa.g.sc145.13 Carica papaya HOM05D008407 ORTHO05D008048 4.3e-09 65.5 128 35.9
TPR.G2192 Trifolium pratense HOM05D008407 ORTHO05D008048 4.3e-09 65.5 135 34.8
Manes.13G079700 Manihot esculenta HOM05D008407 ORTHO05D008048 5.7e-09 65.1 130 38.5
Sed0000570 Sechium edule HOM05D008407 ORTHO05D008048 5.7e-09 65.1 82 42.7
PGR102G1446 Punica granatum HOM05D008407 ORTHO05D008048 7.4e-09 64.7 132 35.6
Haze_25045 Corylus avellana HOM05D008407 ORTHO05D008048 9.7e-09 64.3 139 31.7
Manes.14G007700 Manihot esculenta HOM05D009551 ORTHO05D008048 1.3e-08 63.9 134 34.3
Ah.02g125950 Amaranthus hybridus HOM05D011184 ORTHO05D008048 1.6e-08 63.5 143 33.6
CANSAT01G0822 Cannabis sativa HOM05D008407 ORTHO05D008048 1.6e-08 63.5 111 35.1
THA.LOC104799297 Tarenaya hassleriana HOM05D011184 ORTHO05D008048 1.6e-08 63.5 87 43.7
A06p12760 Brassica napus HOM05D009551 ORTHO05D008048 2.2e-08 63.2 69 47.8
BraA06t24436Z Brassica rapa HOM05D009551 ORTHO05D008048 2.2e-08 63.2 69 47.8
BcaC05g25541 Brassica carinata HOM05D009551 ORTHO05D008048 3.7e-08 62.4 69 47.8
C05p15070 Brassica napus HOM05D009551 ORTHO05D008048 3.7e-08 62.4 69 47.8
BolC5t30222H Brassica oleracea HOM05D009551 ORTHO05D008048 3.7e-08 62.4 69 47.8
Lj3g0024474 Lotus japonicus HOM05D014935 ORTHO05D008048 6.3e-08 61.6 140 33.6
Medtr4g094508 Medicago truncatula HOM05D014935 ORTHO05D008048 8.2e-08 61.2 130 34.6
Gohir.A02G135700 Gossypium hirsutum HOM05D008407 ORTHO05D008048 1.8e-07 60.1 133 34.6
C08p44220 Brassica napus HOM05D009551 ORTHO05D008048 2.4e-07 59.7 76 44.7
BolC8t51968H Brassica oleracea HOM05D009551 ORTHO05D008048 2.4e-07 59.7 76 44.7
BcaB02g06671 Brassica carinata HOM05D009551 ORTHO05D008048 3.1e-07 59.3 67 47.8
BcaC03g18280 Brassica carinata HOM05D011184 ORTHO05D008048 4.1e-07 58.9 71 45.1
C02p63590 Brassica napus HOM05D011184 ORTHO05D008048 4.1e-07 58.9 71 45.1
Nitab4.5_0002354g0030 Nicotiana tabacum HOM05D006700 ORTHO05D008196 4.1e-07 58.9 80 46.2
A09p60720 Brassica napus HOM05D009551 ORTHO05D008048 6.9e-07 58.2 76 43.4
Potri.010G252700 Populus trichocarpa HOM05D009551 ORTHO05D008048 6.9e-07 58.2 151 30.5
CARHR017320 Cardamine hirsuta HOM05D009551 ORTHO05D008048 9.0e-07 57.8 69 49.3
Glyma.08G224100 Glycine max HOM05D014935 ORTHO05D008048 9.0e-07 57.8 142 32.4
BcaC07g41453 Brassica carinata HOM05D009551 ORTHO05D008048 1.5e-06 57.0 76 43.4
CARHR278830 Cardamine hirsuta HOM05D011184 ORTHO05D008048 1.5e-06 57.0 133 33.1
Duzib147G1678 Durio zibethinus HOM05D008407 ORTHO05D008048 1.5e-06 57.0 142 33.1
Sp2g27900 Schrenkiella parvula HOM05D011184 ORTHO05D008048 1.5e-06 57.0 80 40.0
AT1G16850 Arabidopsis thaliana HOM05D009551 ORTHO05D008048 2.6e-06 56.2 71 46.5
BcaC01g02716 Brassica carinata HOM05D006130 ORTHO05D007491 2.6e-06 56.2 80 40.0
C03p61340 Brassica napus HOM05D011184 ORTHO05D008048 2.6e-06 56.2 80 40.0
Carub.0001s1659 Capsella rubella HOM05D009551 ORTHO05D008048 2.6e-06 56.2 73 46.6
Carub.0008s2565 Capsella rubella HOM05D011184 ORTHO05D008048 2.6e-06 56.2 78 39.7
MELO3C007475.2 Cucumis melo HOM05D008407 ORTHO05D008048 2.6e-06 56.2 79 39.2
BcaC07g41387 Brassica carinata HOM05D009551 ORTHO05D008048 4.5e-06 55.5 58 51.7
Medtr8g091950 Medicago truncatula HOM05D008407 ORTHO05D008048 4.5e-06 55.5 91 37.4
Sopen06g022770 Solanum pennellii HOM05D009551 ORTHO05D008048 4.5e-06 55.5 152 33.6
BcaB02g09833 Brassica carinata HOM05D011184 ORTHO05D008048 5.9e-06 55.1 125 31.2
Potri.005G085000 Populus trichocarpa HOM05D008407 ORTHO05D008048 7.7e-06 54.7 114 31.6


User provided reference genes

Program Settings