Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 1.2e-49 199.5 103 100.0
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 4.7e-49 197.6 103 99.0
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 1.0e-48 196.4 103 98.1
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 2.3e-48 195.3 103 97.1
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 3.1e-48 194.9 103 97.1
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 5.2e-48 194.1 102 96.1
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 4.4e-47 191.0 103 94.2
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 4.4e-47 191.0 103 94.2
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 1.3e-46 189.5 103 93.2
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 8.3e-46 186.8 98 96.9
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 6.0e-44 180.6 103 89.3
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 1.1e-42 176.4 102 86.3
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 3.3e-42 174.9 103 86.4
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 1.2e-41 172.9 103 85.4
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 8.0e-41 170.2 102 82.4
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 1.1e-40 169.9 102 82.4
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 1.2e-39 166.4 102 82.4
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 1.2e-39 166.4 103 82.5
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 1.5e-39 166.0 103 81.6
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 1.5e-39 166.0 100 85.0
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 3.4e-39 164.9 102 79.4
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 3.4e-39 164.9 103 81.6
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 5.8e-39 164.1 102 80.4
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 5.8e-39 164.1 98 85.7
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 7.5e-39 163.7 103 80.6
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 9.8e-39 163.3 98 83.7
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 9.8e-39 163.3 103 78.6
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 9.8e-39 163.3 101 79.2
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 9.8e-39 163.3 103 79.6
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 9.8e-39 163.3 103 77.7
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 1.3e-38 162.9 98 83.7
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 1.7e-38 162.5 102 80.4
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 2.2e-38 162.2 102 79.4
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 2.9e-38 161.8 97 82.5
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 2.9e-38 161.8 103 80.6
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 3.7e-38 161.4 103 79.6
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 4.9e-38 161.0 101 79.2
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 4.9e-38 161.0 103 79.6
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 4.9e-38 161.0 98 81.6
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 6.4e-38 160.6 103 79.6
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 1.1e-37 159.8 103 75.7
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 1.9e-37 159.1 100 79.0
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 3.2e-37 158.3 100 79.0
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 4.1e-37 157.9 100 80.0
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 4.1e-37 157.9 100 80.0
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 7.0e-37 157.1 103 75.7
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 9.2e-37 156.8 102 77.5
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 9.2e-37 156.8 103 77.7
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 1.2e-36 156.4 103 76.7
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 1.2e-36 156.4 103 76.7
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 1.6e-36 156.0 103 76.7
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 1.6e-36 156.0 98 79.6
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 2.1e-36 155.6 100 77.0
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 2.7e-36 155.2 102 74.5
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 4.6e-36 154.5 98 80.6
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 6.0e-36 154.1 103 74.8
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 6.0e-36 154.1 103 72.8
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 6.0e-36 154.1 99 75.8
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 6.0e-36 154.1 97 76.3
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 1.0e-35 153.3 100 78.0
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 1.0e-35 153.3 95 80.0
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 1.0e-35 153.3 103 73.8
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 1.0e-35 153.3 103 73.8
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 1.3e-35 152.9 98 77.6
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 1.3e-35 152.9 100 75.0
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 1.3e-35 152.9 103 74.8
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.3e-35 152.9 96 77.1
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 1.7e-35 152.5 99 74.7
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 1.7e-35 152.5 103 73.8
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 1.7e-35 152.5 103 73.8
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 1.7e-35 152.5 94 79.8
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 1.7e-35 152.5 98 79.6
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 3.0e-35 151.8 101 72.3
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 3.9e-35 151.4 96 76.0
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 3.9e-35 151.4 96 76.0
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 3.9e-35 151.4 96 76.0
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 5.1e-35 151.0 98 73.5
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 6.6e-35 150.6 98 76.5
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 1.1e-34 149.8 103 71.8
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 1.1e-34 149.8 94 78.7
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.5e-34 149.4 98 75.5
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 1.9e-34 149.1 98 76.5
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 1.9e-34 149.1 99 75.8
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 1.9e-34 149.1 98 75.5
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 2.5e-34 148.7 102 71.6
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 3.3e-34 148.3 103 74.8
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 4.3e-34 147.9 103 70.9
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 4.3e-34 147.9 99 74.7
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 5.6e-34 147.5 99 73.7
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 7.3e-34 147.1 103 70.9
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 7.3e-34 147.1 103 70.9
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 7.3e-34 147.1 103 70.9
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 7.3e-34 147.1 103 70.9
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 7.3e-34 147.1 103 69.9
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 7.3e-34 147.1 100 75.0
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 9.5e-34 146.7 102 70.6
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 9.5e-34 146.7 98 73.5
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 1.2e-33 146.4 98 74.5
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 1.6e-33 146.0 103 70.9
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 1.6e-33 146.0 103 70.9
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 1.6e-33 146.0 103 71.8
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 2.1e-33 145.6 103 69.9
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 2.8e-33 145.2 100 72.0
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 3.6e-33 144.8 100 71.0
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 3.6e-33 144.8 103 70.9
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 3.6e-33 144.8 100 74.0
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 6.2e-33 144.1 100 72.0
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 8.1e-33 143.7 95 73.7
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 8.1e-33 143.7 103 69.9
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 1.4e-32 142.9 103 68.9
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 1.8e-32 142.5 103 68.9
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 1.8e-32 142.5 99 72.7
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 1.8e-32 142.5 99 72.7
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 2.3e-32 142.1 103 68.9
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 2.3e-32 142.1 103 68.9
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 6.8e-32 140.6 100 69.0
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 8.9e-32 140.2 100 68.0
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 1.2e-31 139.8 95 75.8
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 3.4e-31 138.3 95 74.7
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 5.8e-31 137.5 95 74.7
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 4.9e-30 134.4 95 72.6
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 4.9e-30 134.4 95 72.6
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 9.5e-26 120.2 104 65.4
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 9.5e-26 120.2 104 65.4
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 3.6e-25 118.2 74 73.0
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 1.8e-24 115.9 156 45.5
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 1.8e-24 115.9 77 68.8
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 3.8e-22 108.2 68 75.0
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 6.4e-22 107.5 85 65.9
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 8.4e-22 107.1 68 72.1
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 1.4e-21 106.3 70 71.4
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 2.4e-21 105.5 65 73.8
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 4.2e-21 104.8 70 70.0
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 5.4e-21 104.4 70 68.6
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 1.2e-20 103.2 73 67.1
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 5.1e-19 97.8 88 58.0
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.1e-18 96.7 83 57.8
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 4.3e-18 94.7 89 57.3
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 3.1e-16 88.6 62 69.4
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 1.5e-15 86.3 103 50.5
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 4.9e-14 81.3 99 51.5
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 7.1e-13 77.4 83 50.6
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 6.0e-12 74.3 54 64.8
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 7.8e-12 73.9 62 54.8
MCO07G459 Micromonas commoda HOM05D005227 ORTHO05D006379 2.1e-09 65.9 85 49.4
C09p27040 Brassica napus HOM05D005227 ORTHO05D006379 4.8e-09 64.7 75 49.3
Cfa022274 Carpinus fangiana HOM05D005227 ORTHO05D006379 6.9e-08 60.8 101 37.6
PRCOL_00000303 Prasinoderma coloniale HOM05D005227 ORTHO05D333637 8.4e-06 53.9 86 36.0


User provided reference genes

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