Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 1.7e-188 662.5 342 100.0
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 1.9e-171 605.9 342 93.6
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 3.2e-171 605.1 342 93.6
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 1.5e-139 500.0 295 88.8
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 1.2e-138 496.9 337 78.6
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 4.2e-126 455.3 339 73.2
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 1.7e-124 449.9 293 78.5
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 4.3e-123 445.3 344 69.8
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 4.3e-123 445.3 340 70.0
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 6.2e-122 441.4 291 78.0
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 6.2e-122 441.4 298 75.8
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 8.1e-122 441.0 287 79.1
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 1.4e-121 440.3 342 69.3
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.8e-121 439.9 344 69.5
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 4.0e-121 438.7 342 69.0
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 6.9e-121 438.0 291 77.0
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 2.0e-120 436.4 285 79.6
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 2.0e-120 436.4 297 73.4
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 3.4e-120 435.6 325 70.2
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 7.6e-120 434.5 345 68.7
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 2.2e-119 433.0 329 70.5
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 3.8e-119 432.2 297 75.4
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 3.8e-119 432.2 298 73.5
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 1.4e-118 430.3 321 70.1
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 5.4e-118 428.3 302 73.8
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 7.1e-118 427.9 317 70.3
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 1.2e-117 427.2 298 72.8
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 2.1e-117 426.4 349 64.8
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 4.6e-117 425.2 291 72.9
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 1.0e-116 424.1 346 65.9
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 1.3e-116 423.7 287 76.0
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 1.8e-116 423.3 296 74.3
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 8.7e-116 421.0 287 75.6
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 8.7e-116 421.0 287 76.3
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.9e-115 419.9 341 65.1
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 1.9e-115 419.9 348 64.4
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 1.6e-114 416.8 287 73.2
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 2.1e-114 416.4 330 66.4
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 2.1e-114 416.4 285 74.7
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 3.7e-114 415.6 287 73.9
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 4.8e-114 415.2 332 65.1
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 4.8e-114 415.2 287 72.8
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 4.8e-114 415.2 288 72.6
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 8.1e-114 414.5 322 68.3
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 1.1e-113 414.1 287 72.8
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 1.4e-113 413.7 287 73.2
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 1.8e-113 413.3 312 67.9
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 1.8e-113 413.3 342 65.2
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 1.8e-113 413.3 331 66.8
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 2.4e-113 412.9 330 65.8
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 5.3e-113 411.8 306 69.3
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 5.3e-113 411.8 314 68.5
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 6.9e-113 411.4 312 67.0
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 1.5e-112 410.2 330 64.2
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 5.8e-112 408.3 331 64.7
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 7.6e-112 407.9 330 65.2
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 1.3e-111 407.1 331 64.7
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 1.3e-111 407.1 302 69.5
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 2.2e-111 406.4 319 66.1
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 2.9e-111 406.0 303 68.6
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 3.8e-111 405.6 330 64.8
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 2.4e-110 402.9 287 71.4
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 1.0e-108 397.5 289 70.2
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 1.3e-108 397.1 317 66.9
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 3.0e-108 396.0 286 69.9
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 1.1e-107 394.0 287 70.0
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 5.6e-107 391.7 291 70.4
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 4.8e-106 388.7 317 65.0
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 6.2e-106 388.3 290 69.0
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 2.6e-104 382.9 294 68.7
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 4.5e-104 382.1 287 67.6
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 1.1e-102 377.5 286 70.3
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 2.5e-102 376.3 265 71.7
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 4.2e-102 375.6 288 70.5
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 1.6e-101 373.6 261 73.2
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 2.1e-101 373.2 298 68.8
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 4.6e-101 372.1 293 66.9
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 3.4e-96 355.9 286 68.2
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 5.9e-96 355.1 262 69.8
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 1.6e-93 347.1 289 64.4
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 6.1e-93 345.1 311 60.5
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 1.4e-92 344.0 345 59.4
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 3.3e-91 339.3 291 63.9
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 1.0e-84 317.8 297 61.3
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 3.9e-84 315.8 198 80.8
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 8.8e-84 314.7 338 53.0
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 1.5e-83 313.9 220 74.5
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.0e-83 313.5 298 57.7
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.6e-83 313.2 298 57.7
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.6e-83 313.2 298 57.4
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 4.4e-83 312.4 289 61.9
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 5.9e-80 302.0 288 54.9
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 3.2e-78 296.2 250 66.8
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 9.4e-78 294.7 198 72.7
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 6.1e-77 292.0 288 53.1
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 8.8e-76 288.1 283 54.8
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.2e-74 283.5 285 54.4
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.4e-73 280.8 285 54.0
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 2.2e-71 273.5 262 58.8
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 6.1e-69 265.4 285 53.0
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 6.5e-63 245.4 214 63.1
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 2.7e-61 240.0 173 72.3
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 2.0e-56 223.8 326 44.5
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 2.9e-55 219.9 208 56.7
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 3.8e-55 219.5 166 68.7
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 8.9e-44 181.8 145 66.9
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 8.9e-44 181.8 132 69.7
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 9.8e-43 178.3 114 79.8
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 2.5e-38 163.7 192 51.6
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 6.8e-36 155.6 192 50.0
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 9.8e-35 151.8 188 47.9
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 1.2e-32 144.8 225 44.4
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 7.8e-32 142.1 212 43.4
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 1.3e-31 141.4 214 43.9
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 2.5e-30 137.1 250 33.6
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 5.6e-30 136.0 104 70.2
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 5.8e-27 125.9 212 42.9
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 7.5e-27 125.6 79 84.8
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 8.3e-26 122.1 271 32.1
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 1.9e-25 120.9 253 32.0
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 2.4e-25 120.6 71 80.3
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 4.1e-25 119.8 136 52.9
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 9.2e-25 118.6 82 69.5
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 6.2e-21 105.9 70 72.9
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 1.8e-20 104.4 90 58.9
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 6.8e-20 102.4 61 80.3
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 4.4e-19 99.8 77 62.3
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 3.2e-17 93.6 151 40.4
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 1.7e-15 87.8 128 40.6
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 3.0e-15 87.0 63 71.4
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 7.3e-14 82.4 46 76.1
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 9.6e-14 82.0 76 59.2
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 3.1e-12 77.0 77 55.8
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 1.7e-10 71.2 57 66.7
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 2.2e-10 70.9 36 83.3
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 2.2e-10 70.9 38 81.6
TAR381G1022 Trochodendron aralioides HOM05D005703 ORTHO05D006643 9.6e-06 55.5 92 38.0


User provided reference genes

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