Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400030871 Solanum tuberosum HOM05D005964 ORTHO05D007242 9.2e-104 380.2 185 100.0
Sopen08g024420 Solanum pennellii HOM05D005964 ORTHO05D007242 1.1e-101 373.2 185 97.3
Solyc08g075770.3 Solanum lycopersicum HOM05D005964 ORTHO05D007242 3.3e-101 371.7 185 96.8
Nitab4.5_0002930g0010 Nicotiana tabacum HOM05D005964 ORTHO05D007242 2.3e-86 322.4 183 83.6
Nitab4.5_0000030g0090 Nicotiana tabacum HOM05D005964 ORTHO05D007242 3.3e-85 318.5 182 83.5
Peaxi162Scf02295g00024 Petunia axillaris HOM05D005964 ORTHO05D007242 4.9e-81 304.7 183 79.2
Dinv28013 Davidia involucrata HOM05D005964 ORTHO05D007242 1.0e-54 217.2 177 58.8
Prupe.5G020400 Prunus persica HOM05D005964 ORTHO05D007242 1.9e-53 213.0 175 60.6
RcHm_v2.0_Chr7g0213391 Rosa chinensis HOM05D005964 ORTHO05D007242 6.3e-52 208.0 175 54.3
FAN13G2421 Fragaria x ananassa HOM05D005964 ORTHO05D007242 1.1e-51 207.2 175 54.3
Oeu046805.1 Olea europaea HOM05D005964 ORTHO05D007242 1.8e-51 206.5 175 57.1
FvH4_5g23960 Fragaria vesca HOM05D005964 ORTHO05D007242 5.3e-51 204.9 175 53.7
FAN18G2518 Fragaria x ananassa HOM05D005964 ORTHO05D007242 9.0e-51 204.1 175 53.7
MD00G1001800 Malus domestica HOM05D005964 ORTHO05D007242 9.0e-51 204.1 179 57.0
CSS0036776 Camellia sinensis var. sinensis HOM05D005964 ORTHO05D007242 1.2e-50 203.8 177 53.1
Cc08_g05080 Coffea canephora HOM05D005964 ORTHO05D007242 3.4e-50 202.2 183 56.3
Actinidia18160 Actinidia chinensis HOM05D005964 ORTHO05D007242 2.2e-49 199.5 177 54.2
Actinidia14743 Actinidia chinensis HOM05D005964 ORTHO05D007242 2.9e-49 199.1 176 54.0
Rhsim07G0138900 Rhododendron simsii HOM05D005964 ORTHO05D007242 2.9e-49 199.1 177 54.8
Migut.E01349 Erythranthe guttata HOM05D005964 ORTHO05D007242 5.0e-49 198.4 175 55.4
MD06G1015300 Malus domestica HOM05D005964 ORTHO05D007242 1.2e-47 193.7 177 54.8
Lj8A334G75 Lonicera japonica HOM05D005964 ORTHO05D007242 2.1e-47 193.0 178 52.2
Thecc.03G317600 Theobroma cacao HOM05D005964 ORTHO05D007242 2.1e-47 193.0 181 53.6
SGA_v2.0_scaffold111G31365 Striga asiatica HOM05D005964 ORTHO05D007242 2.7e-47 192.6 181 52.5
Duzib084G0482 Durio zibethinus HOM05D005964 ORTHO05D007242 4.6e-47 191.8 181 53.6
Manes.17G003600 Manihot esculenta HOM05D005964 ORTHO05D007242 2.3e-46 189.5 185 49.7
Atru.chr6.1471 Acer truncatum HOM05D005964 ORTHO05D007242 1.5e-45 186.8 179 53.6
Gohir.A03G000012 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.5e-45 186.8 181 51.4
Eucgr.E01230 Eucalyptus grandis HOM05D005964 ORTHO05D007242 1.9e-45 186.4 181 50.8
Eucgr.E01239 Eucalyptus grandis HOM05D005964 ORTHO05D007242 1.9e-45 186.4 181 50.8
unitig_899.g14736 Utricularia gibba HOM05D005964 ORTHO05D007242 2.5e-45 186.0 177 54.2
Potri.001G130900 Populus trichocarpa HOM05D005964 ORTHO05D007242 4.3e-45 185.3 180 53.3
CiPaw.11G103200 Carya illinoinensis HOM05D005964 ORTHO05D007242 9.7e-45 184.1 178 53.4
Sabra03G0070200 Salix brachista HOM05D005964 ORTHO05D007242 9.7e-45 184.1 185 53.0
Hma1.2p1_0544F.1_g175520 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 1.3e-44 183.7 177 53.1
CANSAT21G0049 Cannabis sativa HOM05D005964 ORTHO05D007242 2.8e-44 182.6 175 51.4
PGR042G2449 Punica granatum HOM05D005964 ORTHO05D007242 3.7e-44 182.2 189 51.3
MSTRG.1771 Avicennia marina HOM05D005964 ORTHO05D007242 4.8e-44 181.8 179 51.4
Cfa012590 Carpinus fangiana HOM05D005964 ORTHO05D007242 8.2e-44 181.0 178 52.2
Duzib205G1143 Durio zibethinus HOM05D005964 ORTHO05D007242 1.1e-43 180.6 181 50.8
Dinv22873 Davidia involucrata HOM05D005964 ORTHO05D007242 1.8e-43 179.9 160 54.4
Glyma.09G213600 Glycine max HOM05D005964 ORTHO05D007242 1.8e-43 179.9 178 48.9
MELO3C013795.2 Cucumis melo HOM05D005964 ORTHO05D007242 3.1e-43 179.1 178 51.1
Lalb_Chr05g0215451 Lupinus albus HOM05D005964 ORTHO05D007242 3.1e-43 179.1 181 48.1
Potri.003G103000 Populus trichocarpa HOM05D005964 ORTHO05D007242 5.3e-43 178.3 177 53.1
HanXRQChr13g0412031 Helianthus annuus HOM05D005964 ORTHO05D007242 6.9e-43 177.9 177 52.0
Gohir.A08G150100 Gossypium hirsutum HOM05D005964 ORTHO05D007242 2.0e-42 176.4 181 50.3
Glyma.01G149400 Glycine max HOM05D005964 ORTHO05D007242 2.6e-42 176.0 181 47.5
Lj2g0015502 Lotus japonicus HOM05D005964 ORTHO05D007242 2.6e-42 176.0 175 47.4
Gorai.004G178600 Gossypium raimondii HOM05D005964 ORTHO05D007242 3.4e-42 175.6 181 50.3
CsaV3_3G001060 Cucumis sativus L. HOM05D005964 ORTHO05D007242 4.5e-42 175.3 178 50.0
Ciclev10002048m.g Citrus clementina HOM05D005964 ORTHO05D007242 5.9e-42 174.9 186 48.9
ECA240G3292 Erigeron canadensis HOM05D005964 ORTHO05D007242 7.7e-42 174.5 178 51.7
Psat2g142160 Pisum sativum HOM05D005964 ORTHO05D007242 7.7e-42 174.5 182 46.7
Lsat_1_v5_gn_5_58981 Lactuca sativa HOM05D005964 ORTHO05D007242 2.2e-41 172.9 180 49.4
Gohir.D03G177900 Gossypium hirsutum HOM05D005964 ORTHO05D007242 5.0e-41 171.8 203 45.8
Gorai.003G187200 Gossypium raimondii HOM05D005964 ORTHO05D007242 5.0e-41 171.8 203 45.8
Sed0000446 Sechium edule HOM05D005964 ORTHO05D007242 1.4e-40 170.2 178 47.8
VMungo1215G0316 Vigna mungo HOM05D005964 ORTHO05D007242 2.5e-40 169.5 181 47.5
TWI12G1028 Tripterygium wilfordii HOM05D005964 ORTHO05D007242 3.2e-40 169.1 180 49.4
TAR381G0569 Trochodendron aralioides HOM05D005964 ORTHO05D007242 4.2e-40 168.7 175 49.7
arahy.Tifrunner.gnm1.ann1.NL6YXC Arachis hypogaea HOM05D005964 ORTHO05D007242 4.6e-39 165.2 178 44.9
arahy.Tifrunner.gnm1.ann1.PBCI2P Arachis hypogaea HOM05D005964 ORTHO05D007242 4.6e-39 165.2 178 44.9
Medtr5g026860 Medicago truncatula HOM05D005964 ORTHO05D007242 7.9e-39 164.5 182 46.2
Ah.12g055850 Amaranthus hybridus HOM05D005964 ORTHO05D007242 1.8e-38 163.3 182 47.8
TPR.G17260 Trifolium pratense HOM05D005964 ORTHO05D007242 2.3e-38 162.9 182 46.2
Thhalv10025843m.g Eutrema salsugineum HOM05D005964 ORTHO05D007242 3.0e-38 162.5 173 46.2
GSVIVG01022785001 Vitis vinifera HOM05D005964 ORTHO05D007242 1.5e-37 160.2 129 61.2
BcaNung04009 Brassica carinata HOM05D005964 ORTHO05D007242 2.0e-37 159.8 175 45.7
EL10Ac5g11971 Beta vulgaris HOM05D005964 ORTHO05D007242 4.4e-37 158.7 182 45.6
Sc01g0007030 Simmondsia chinensis HOM05D005964 ORTHO05D007242 5.7e-37 158.3 178 47.2
BcaC06g30611 Brassica carinata HOM05D005964 ORTHO05D007242 2.8e-36 156.0 176 44.3
BcaNung03076 Brassica carinata HOM05D005964 ORTHO05D007242 3.7e-36 155.6 176 44.3
Sp7g17840 Schrenkiella parvula HOM05D005964 ORTHO05D007242 3.7e-36 155.6 173 45.1
AT4G19140 Arabidopsis thaliana HOM05D005964 ORTHO05D007242 1.1e-35 154.1 169 45.0
vmacro14234 Vaccinium macrocarpon HOM05D005964 ORTHO05D007242 1.8e-35 153.3 269 34.6
BcaC09g51437 Brassica carinata HOM05D005964 ORTHO05D007242 4.1e-35 152.1 181 43.1
Carub.0007s2201 Capsella rubella HOM05D005964 ORTHO05D007242 2.0e-34 149.8 169 43.8
AL7G34950 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 5.9e-34 148.3 169 42.6
Aa31LG6G1830 Aethionema arabicum HOM05D005964 ORTHO05D007242 1.7e-33 146.7 173 41.6
CARHR226010 Cardamine hirsuta HOM05D005964 ORTHO05D007242 1.7e-33 146.7 169 42.0
BolC7t45529H Brassica oleracea HOM05D005964 ORTHO05D007242 2.2e-33 146.4 189 41.3
AUR62007382 Chenopodium quinoa HOM05D005964 ORTHO05D007242 2.9e-33 146.0 166 45.8
HPP92_021116 Vanilla planifolia HOM05D005964 ORTHO05D007242 8.5e-33 144.4 176 43.2
Gohir.D08G171200 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.1e-32 144.1 133 54.1
C01p13130 Brassica napus HOM05D005964 ORTHO05D007242 1.4e-32 143.7 193 40.4
BolC1t01286H Brassica oleracea HOM05D005964 ORTHO05D007242 1.4e-32 143.7 193 40.4
Aqoxy7G00888 Aquilegia oxysepala HOM05D005964 ORTHO05D007242 1.9e-32 143.3 179 46.4
A01p11100 Brassica napus HOM05D005964 ORTHO05D007242 1.9e-32 143.3 185 40.5
BraA01t01056Z Brassica rapa HOM05D005964 ORTHO05D007242 1.9e-32 143.3 185 40.5
Hund11143 Selenicereus undatus HOM05D005964 ORTHO05D007242 1.2e-31 140.6 226 37.6
BraA03t14264Z Brassica rapa HOM05D005964 ORTHO05D007242 1.6e-31 140.2 180 40.6
DCAR_008183 Daucus carota HOM05D005964 ORTHO05D007242 1.6e-31 140.2 178 46.1
MBI04_g27277_MAGBIO Magnolia biondii HOM05D005964 ORTHO05D007242 1.6e-31 140.2 182 43.4
THA.LOC104811073 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 1.8e-30 136.7 177 41.2
HanXRQChr03g0081171 Helianthus annuus HOM05D005964 ORTHO05D007242 2.3e-30 136.3 180 42.8
AUR62018605 Chenopodium quinoa HOM05D005964 ORTHO05D007242 1.5e-29 133.7 133 50.4
SalBow8G2874 Salvia bowleyana HOM05D005964 ORTHO05D007242 3.3e-29 132.5 133 51.9
Os04g0600400 Oryza sativa ssp. japonica HOM05D005964 ORTHO05D007242 4.8e-28 128.6 183 41.0
Hma1.2p1_0544F.1_g175510 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 6.3e-28 128.3 84 65.5
FAN18G4345 Fragaria x ananassa HOM05D005964 ORTHO05D007242 1.1e-27 127.5 78 71.8
PSO675G7054 Papaver somniferum HOM05D005964 ORTHO05D007242 7.0e-27 124.8 173 40.5
arahy.Tifrunner.gnm1.ann1.MDU2JP Arachis hypogaea HOM05D005964 ORTHO05D007242 1.2e-26 124.0 126 46.0
ClCG10G001030 Citrullus lanatus HOM05D005964 ORTHO05D007242 1.2e-26 124.0 142 45.1
QL12p001050 Quercus lobata HOM05D005964 ORTHO05D007242 1.6e-26 123.6 81 71.6
PSO717G0069 Papaver somniferum HOM05D005964 ORTHO05D007242 6.5e-25 118.2 139 45.3
Phvul.002G128700 Phaseolus vulgaris HOM05D005964 ORTHO05D007242 6.5e-25 118.2 108 53.7
MSTRG.13905 Avicennia marina HOM05D005964 ORTHO05D007242 8.5e-25 117.9 74 70.3
Zm00001eb071860 Zea mays HOM05D005964 ORTHO05D007242 8.5e-25 117.9 178 40.4
Sabra01G0101200 Salix brachista HOM05D005964 ORTHO05D007242 1.1e-24 117.5 77 67.5
Nn1g02066 Nelumbo nucifera HOM05D005964 ORTHO05D007242 9.4e-24 114.4 88 60.2
THA.LOC104806194 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 2.1e-23 113.2 122 46.7
Cpa.g.sc90.42 Carica papaya HOM05D005964 ORTHO05D007242 6.1e-23 111.7 74 63.5
ATR0829G145 Amborella trichopoda HOM05D005964 ORTHO05D007242 4.1e-19 99.0 75 60.0
CDE12G0810 Ceratophyllum demersum HOM05D005964 ORTHO05D007242 5.0e-17 92.0 124 41.9
SEGI_32375 Sequoiadendron giganteum HOM05D005964 ORTHO05D007242 8.5e-17 91.3 77 59.7
A03p51750 Brassica napus HOM05D005964 ORTHO05D007242 8.8e-14 81.3 171 31.6
C07p50270 Brassica napus HOM05D005964 ORTHO05D007242 8.8e-14 81.3 176 31.2
AL8G21390 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 2.0e-10 70.1 124 33.9
Oeu042210.1 Olea europaea HOM05D005964 ORTHO05D007242 3.5e-10 69.3 50 60.0
PSO717G0022 Papaver somniferum HOM05D005964 ORTHO05D007242 1.3e-09 67.4 45 66.7
Haze_08067 Corylus avellana HOM05D005964 ORTHO05D007242 2.3e-09 66.6 105 37.1
Cpa.g.c47778 Carica papaya HOM05D005964 ORTHO05D007242 3.2e-08 62.8 40 60.0
Mapoly0153s0025 Marchantia polymorpha HOM05D005964 ORTHO05D007242 1.2e-07 60.8 133 33.1
Haze_05991 Corylus avellana HOM05D005964 ORTHO05D007242 2.8e-07 59.7 39 71.8


User provided reference genes

Program Settings