Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 3.5e-170 601.7 332 100.0
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 3.3e-160 568.5 332 90.7
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 8.1e-159 563.9 332 91.0
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 1.5e-157 559.7 331 87.3
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.1e-147 526.9 332 83.4
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 2.5e-144 515.8 332 82.8
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 3.5e-114 415.6 340 74.1
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 3.4e-109 399.1 334 64.1
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.7e-106 389.4 325 64.6
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 7.9e-106 387.9 332 61.7
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 3.0e-105 386.0 332 61.4
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 8.2e-103 377.9 334 60.8
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 2.4e-102 376.3 330 59.7
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.1e-102 375.6 328 58.8
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 2.9e-100 369.4 332 58.1
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 3.8e-100 369.0 331 60.1
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 5.0e-100 368.6 330 58.8
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 1.4e-99 367.1 329 60.8
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 2.5e-99 366.3 323 59.4
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 5.1e-97 358.6 324 58.0
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 2.8e-95 352.8 333 58.0
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 2.8e-95 352.8 332 59.3
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 3.7e-95 352.4 324 57.7
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 6.3e-95 351.7 324 57.4
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 8.2e-95 351.3 323 58.5
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 1.1e-94 350.9 332 56.6
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 5.3e-94 348.6 384 51.6
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 4.5e-93 345.5 332 54.2
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.0e-92 344.4 330 55.2
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.7e-92 343.6 330 57.0
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 3.8e-92 342.4 330 54.8
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 1.9e-91 340.1 330 54.8
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.9e-91 340.1 333 56.5
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 2.5e-91 339.7 332 56.6
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 4.2e-91 339.0 332 56.6
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 9.4e-91 337.8 330 54.8
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 1.4e-89 334.0 332 54.8
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 3.9e-89 332.4 332 55.7
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 5.2e-89 332.0 332 54.5
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 6.7e-89 331.6 332 53.9
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.7e-87 327.0 326 54.6
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.7e-87 327.0 333 54.7
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.7e-87 327.0 333 54.7
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 2.8e-87 326.2 329 53.8
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 2.0e-85 320.1 339 52.2
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 2.2e-84 316.6 325 52.0
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 5.0e-84 315.5 334 54.5
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 4.2e-83 312.4 333 51.7
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 1.4e-81 307.4 268 62.3
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 5.2e-81 305.4 337 51.3
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 5.2e-81 305.4 338 51.2
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 2.0e-80 303.5 338 52.1
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 5.7e-80 302.0 334 49.7
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 5.7e-80 302.0 332 50.9
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 2.8e-79 299.7 332 51.8
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 3.7e-79 299.3 333 50.2
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 6.3e-79 298.5 388 44.8
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 7.0e-78 295.0 332 52.4
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 1.2e-77 294.3 332 51.2
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 1.6e-77 293.9 332 50.9
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 1.6e-77 293.9 332 47.6
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 2.0e-77 293.5 332 51.5
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 4.5e-77 292.4 339 51.9
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.0e-76 291.2 332 49.7
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 6.5e-76 288.5 332 49.4
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 6.5e-76 288.5 334 50.3
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 1.1e-75 287.7 332 48.8
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 1.5e-75 287.3 404 43.8
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 2.7e-74 283.1 341 49.0
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 6.1e-74 282.0 319 51.1
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 6.1e-74 282.0 388 43.6
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.0e-73 281.2 332 49.7
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.8e-73 280.4 332 49.7
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 8.8e-73 278.1 326 50.6
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 8.8e-73 278.1 319 50.8
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 2.0e-72 276.9 332 47.3
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 7.5e-72 275.0 332 45.5
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 2.8e-71 273.1 333 48.0
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 1.4e-70 270.8 329 48.0
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 5.4e-70 268.9 335 46.0
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 2.0e-69 266.9 332 47.0
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 4.5e-69 265.8 278 51.8
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 5.9e-69 265.4 328 46.3
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.3e-68 263.5 278 51.1
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 2.9e-68 263.1 332 44.3
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 1.5e-67 260.8 308 49.7
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 2.3e-65 253.4 324 48.1
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 1.2e-64 251.1 275 51.3
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 3.4e-64 249.6 389 41.6
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 9.8e-64 248.1 332 43.7
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 9.8e-64 248.1 327 46.2
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 7.0e-62 241.9 326 43.6
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 7.0e-62 241.9 329 45.3
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 3.5e-61 239.6 277 47.3
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 1.0e-60 238.0 305 46.6
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 6.6e-60 235.3 323 46.4
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 8.6e-60 235.0 324 42.9
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 8.6e-60 235.0 337 45.7
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 1.5e-59 234.2 336 43.5
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.5e-59 234.2 264 48.5
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 3.3e-59 233.0 373 40.2
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 5.6e-59 232.3 339 44.2
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 1.2e-58 231.1 327 45.3
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.6e-58 230.7 257 49.0
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.7e-55 220.7 389 37.8
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 2.2e-55 220.3 308 43.5
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 6.4e-55 218.8 256 47.3
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.4e-54 216.9 354 40.4
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 7.0e-54 215.3 329 40.4
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 1.7e-52 210.7 311 42.1
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 6.6e-52 208.8 313 42.5
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 4.7e-50 202.6 366 37.7
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 6.2e-50 202.2 332 39.8
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 1.1e-49 201.4 305 40.3
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 1.4e-49 201.1 329 40.1
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 1.4e-49 201.1 197 53.3
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 2.3e-49 200.3 329 40.1
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 2.3e-49 200.3 329 40.1
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.5e-48 197.6 327 38.5
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 5.8e-48 195.7 308 39.3
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 1.1e-46 191.4 155 63.2
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 5.4e-46 189.1 175 55.4
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 7.0e-46 188.7 294 37.4
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 9.2e-46 188.3 264 40.2
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 2.1e-45 187.2 305 37.4
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 7.8e-45 185.3 333 37.2
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 1.3e-44 184.5 333 36.3
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.3e-44 183.7 176 57.4
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 5.0e-44 182.6 333 38.4
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 8.6e-44 181.8 334 37.4
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 8.6e-44 181.8 264 39.8
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.5e-43 181.0 295 38.3
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 9.5e-43 178.3 363 35.3
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 6.2e-42 175.6 309 38.2
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.1e-41 174.9 279 41.9
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.5e-40 171.0 312 36.5
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 1.4e-38 164.5 320 36.9
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 1.9e-38 164.1 210 45.2
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 4.1e-38 162.9 210 46.2
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.6e-37 159.5 368 32.1
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 6.0e-37 159.1 146 57.5
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 1.3e-36 157.9 152 57.2
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 1.3e-36 157.9 151 58.9
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 2.5e-35 153.7 225 40.9
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 3.6e-34 149.8 260 40.4
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 3.6e-34 149.8 328 35.7
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 8.1e-34 148.7 312 34.0
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 8.9e-33 145.2 230 37.0
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 2.6e-32 143.7 142 53.5
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.1e-30 138.3 374 33.2
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 2.4e-30 137.1 174 43.7
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 3.2e-30 136.7 134 57.5
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 3.5e-29 133.3 135 57.0
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 3.5e-29 133.3 194 44.8
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 4.6e-29 132.9 112 59.8
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.9e-27 127.5 159 44.7
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.5e-27 127.1 159 44.7
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.2e-24 118.2 292 31.8
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 6.4e-23 112.5 130 48.5
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 3.2e-22 110.2 233 35.6
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 1.0e-20 105.1 90 57.8
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 3.0e-20 103.6 262 29.4
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 6.6e-20 102.4 212 35.8
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 2.8e-18 97.1 325 29.5
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 4.0e-17 93.2 269 29.7
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.5e-16 91.3 214 28.0
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 3.4e-16 90.1 48 81.2
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 5.8e-16 89.4 222 32.9
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 5.8e-16 89.4 222 32.9
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 2.2e-15 87.4 195 30.8
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 6.4e-15 85.9 94 51.1
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 1.2e-13 81.6 205 31.7
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 2.3e-12 77.4 138 34.8
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 2.3e-12 77.4 138 34.8
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 7.4e-11 72.4 100 55.0
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 2.8e-10 70.5 84 47.6
MBI12_g20562_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.2e-08 65.1 50 64.0
MBI07_g40370_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.9e-06 57.8 127 34.6
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 1.9e-06 57.8 44 68.2


User provided reference genes

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