Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.0e-173 613.2 295 100.0
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 2.5e-156 555.4 302 89.7
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 8.2e-155 550.4 297 91.6
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 3.1e-154 548.5 319 85.3
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 6.9e-154 547.4 313 86.9
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 2.4e-146 522.3 295 83.1
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.1e-140 503.4 302 80.1
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.8e-138 496.1 284 82.7
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.6e-137 493.0 293 80.2
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 4.5e-137 491.5 294 79.6
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 1.0e-136 490.3 294 80.3
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 1.0e-136 490.3 293 78.5
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.7e-136 489.6 294 80.3
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 6.5e-136 487.6 294 79.9
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 1.1e-135 486.9 293 79.2
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 3.2e-135 485.3 293 78.5
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 2.1e-134 482.6 293 77.1
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 2.7e-134 482.3 281 81.5
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 3.6e-134 481.9 293 75.8
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 2.6e-132 475.7 294 79.3
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 3.3e-132 475.3 291 76.6
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 4.4e-132 474.9 290 78.6
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 5.7e-132 474.6 293 77.5
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 7.5e-132 474.2 293 78.2
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 1.7e-131 473.0 297 76.1
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 1.7e-131 473.0 296 77.7
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 1.4e-130 469.9 294 74.5
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 1.4e-130 469.9 294 74.5
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 2.4e-130 469.2 301 74.1
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 4.1e-130 468.4 293 75.4
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 2.0e-129 466.1 287 76.3
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 1.3e-128 463.4 286 75.9
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 1.7e-128 463.0 293 74.7
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 2.2e-128 462.6 288 75.0
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 6.5e-128 461.1 296 75.0
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 4.2e-127 458.4 288 74.7
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 5.5e-127 458.0 288 73.6
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 9.4e-127 457.2 291 74.9
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 3.6e-126 455.3 288 73.6
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 6.1e-126 454.5 288 72.6
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 6.1e-126 454.5 293 72.7
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.4e-125 453.4 298 73.8
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 1.8e-125 453.0 303 69.6
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 3.0e-125 452.2 275 75.6
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 4.0e-125 451.8 295 75.9
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 8.8e-125 450.7 293 74.4
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 8.8e-125 450.7 297 73.7
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 8.8e-125 450.7 287 73.5
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 1.5e-124 449.9 291 74.9
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 2.8e-123 445.7 291 74.2
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 6.3e-123 444.5 272 77.2
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 1.1e-122 443.7 293 72.4
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 1.8e-122 443.0 287 73.2
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 1.8e-122 443.0 293 71.3
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 1.8e-122 443.0 295 71.2
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 2.4e-122 442.6 293 72.4
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 1.6e-121 439.9 281 75.1
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 5.9e-121 438.0 287 72.1
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 5.9e-121 438.0 288 71.9
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 7.7e-121 437.6 293 71.3
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 3.8e-120 435.3 289 70.2
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 8.6e-120 434.1 300 70.0
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 1.1e-119 433.7 293 71.3
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 5.5e-119 431.4 287 72.1
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 7.2e-119 431.0 308 69.8
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 1.6e-118 429.9 274 73.0
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 2.1e-118 429.5 301 69.8
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 8.0e-118 427.6 262 74.8
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.0e-117 427.2 274 71.5
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 1.4e-117 426.8 281 73.3
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 5.2e-117 424.9 305 69.5
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 8.9e-117 424.1 278 72.7
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.5e-116 423.3 262 74.8
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 2.6e-116 422.5 266 75.6
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 9.8e-116 420.6 287 67.9
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 2.2e-115 419.5 266 76.3
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 6.3e-115 417.9 288 69.4
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 8.3e-115 417.5 287 69.7
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 1.1e-114 417.2 289 69.6
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 1.1e-114 417.2 287 69.0
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 1.4e-114 416.8 272 71.7
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 5.4e-114 414.8 294 68.4
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 2.0e-113 412.9 280 67.5
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 7.8e-113 411.0 287 69.7
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 1.0e-112 410.6 276 68.1
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 2.9e-112 409.1 288 65.6
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 3.8e-112 408.7 274 70.8
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 6.6e-112 407.9 287 68.3
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 6.6e-112 407.9 281 70.5
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 1.1e-111 407.1 293 67.6
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 1.5e-111 406.8 287 67.9
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 1.5e-111 406.8 292 67.5
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.9e-111 406.4 288 66.7
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 1.9e-111 406.4 295 66.4
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 1.9e-111 406.4 289 65.4
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 1.6e-110 403.3 267 68.5
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 6.1e-110 401.4 287 66.9
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 1.0e-109 400.6 295 66.8
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 4.0e-109 398.7 290 67.9
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 6.8e-109 397.9 294 68.4
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 2.0e-108 396.4 292 66.8
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 7.5e-108 394.4 273 67.0
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 9.8e-108 394.0 271 69.0
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 2.2e-107 392.9 260 70.4
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 9.2e-106 387.5 232 79.3
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 4.6e-105 385.2 333 61.6
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 6.0e-105 384.8 291 64.6
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 1.3e-104 383.6 297 65.0
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 3.9e-104 382.1 317 62.1
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 8.6e-104 380.9 334 58.4
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.5e-103 380.2 334 58.4
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.2e-102 377.1 297 64.0
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 2.9e-99 365.9 277 64.6
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 6.0e-97 358.2 287 64.8
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 1.5e-95 353.6 269 61.0
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 2.5e-95 352.8 178 95.5
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 4.3e-95 352.1 233 71.2
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 3.6e-94 349.0 178 94.9
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 1.8e-93 346.7 299 59.2
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 3.7e-91 339.0 258 60.5
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 4.9e-91 338.6 274 60.6
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 1.9e-90 336.7 305 56.1
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 2.1e-89 333.2 290 56.9
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 2.5e-87 326.2 288 57.6
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 2.5e-87 326.2 258 56.6
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 2.4e-85 319.7 252 60.7
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 5.8e-84 315.1 262 56.9
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 1.3e-83 313.9 187 78.6
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.1e-82 310.8 178 81.5
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.4e-82 310.5 291 57.7
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 5.4e-82 308.5 178 80.3
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 9.2e-82 307.8 291 57.0
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 2.3e-80 303.1 307 52.4
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 1.1e-79 300.8 307 52.1
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.2e-78 297.4 300 55.0
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 6.2e-78 295.0 197 69.5
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 9.0e-77 291.2 285 52.6
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 7.6e-76 288.1 275 50.2
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 2.4e-74 283.1 264 53.0
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 9.3e-74 281.2 176 76.1
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 2.7e-73 279.6 262 54.2
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 8.7e-72 274.6 275 49.5
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 1.9e-71 273.5 178 74.7
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 1.6e-70 270.4 163 77.3
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 5.8e-68 261.9 330 44.2
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 5.4e-66 255.4 170 72.4
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.2e-65 254.2 187 67.9
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.6e-65 253.8 187 67.4
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 3.0e-64 249.6 188 63.8
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 6.2e-62 241.9 241 55.2
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 8.1e-62 241.5 491 32.6
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 1.8e-61 240.4 176 64.8
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 1.4e-58 230.7 173 63.6
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 5.3e-53 212.2 258 41.1
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 8.4e-51 204.9 285 40.0
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 1.0e-48 198.0 113 77.0
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 1.1e-47 194.5 124 71.8
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 1.1e-47 194.5 142 65.5
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 9.0e-45 184.9 134 65.7
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 1.0e-43 181.4 211 45.5
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 4.6e-41 172.6 107 72.9
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 7.9e-41 171.8 111 72.1
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 4.3e-39 166.0 133 58.6
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 3.7e-38 162.9 104 72.1
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 1.1e-37 161.4 127 59.1
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 9.1e-37 158.3 86 83.7
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 4.2e-34 149.4 97 69.1
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 9.4e-34 148.3 186 46.2
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.6e-33 147.5 109 66.1
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 6.7e-32 142.1 138 53.6
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 2.9e-27 126.7 88 68.2
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 4.4e-23 112.8 86 58.1
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 9.1e-21 105.1 61 72.1
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 7.2e-18 95.5 54 79.6
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.2e-17 94.7 51 86.3
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 5.2e-16 89.4 72 52.8
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 4.1e-13 79.7 51 72.5
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 2.5e-10 70.5 45 73.3
CSS0047531 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D112748 9.4e-10 68.6 52 65.4
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 1.2e-09 68.2 43 74.4
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 6.8e-08 62.4 37 78.4


User provided reference genes

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