Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 1.3e-179 632.9 315 100.0
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 2.5e-170 602.1 317 95.3
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 4.3e-170 601.3 317 95.0
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 1.0e-150 537.0 320 85.0
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 6.1e-148 527.7 319 81.5
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 7.4e-146 520.8 314 83.1
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 5.9e-143 511.1 296 83.4
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 5.7e-122 441.4 297 72.4
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 4.8e-121 438.3 292 74.0
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 1.2e-116 423.7 299 70.2
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 1.4e-115 420.2 299 69.9
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 1.5e-114 416.8 286 70.6
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 4.4e-114 415.2 298 68.8
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 1.3e-113 413.7 297 68.4
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 6.3e-113 411.4 301 67.8
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 8.3e-113 411.0 290 68.3
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 1.8e-112 409.8 292 67.1
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 2.4e-112 409.5 266 73.3
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 3.1e-112 409.1 286 69.2
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 7.0e-112 407.9 297 66.3
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 3.5e-111 405.6 287 68.3
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 3.5e-111 405.6 279 71.0
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 4.5e-111 405.2 297 68.4
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 1.7e-110 403.3 299 65.9
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 1.7e-110 403.3 301 67.8
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 2.3e-110 402.9 300 68.0
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 2.3e-110 402.9 268 69.8
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 5.0e-110 401.7 280 69.3
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 6.6e-110 401.4 286 68.9
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.1e-109 400.6 268 71.6
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 1.5e-109 400.2 290 67.6
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 5.6e-109 398.3 299 66.6
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 7.3e-109 397.9 308 65.9
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 9.5e-109 397.5 278 67.6
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 2.1e-108 396.4 295 64.7
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 3.6e-108 395.6 290 67.2
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 3.6e-108 395.6 290 66.2
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 4.7e-108 395.2 267 70.8
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 4.7e-108 395.2 278 67.6
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 8.0e-108 394.4 298 63.8
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 8.0e-108 394.4 298 63.8
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.0e-107 394.0 254 72.8
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 1.8e-107 393.3 288 68.1
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 2.3e-107 392.9 295 65.8
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 2.3e-107 392.9 277 66.8
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 2.3e-107 392.9 278 67.3
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 4.0e-107 392.1 254 72.0
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 4.0e-107 392.1 299 65.6
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 8.9e-107 391.0 288 68.1
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 1.2e-106 390.6 288 67.7
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 1.2e-106 390.6 254 71.7
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.5e-106 390.2 299 65.2
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 2.0e-106 389.8 304 65.5
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 2.0e-106 389.8 300 67.0
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 3.4e-106 389.0 251 73.3
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 3.4e-106 389.0 251 73.3
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 4.4e-106 388.7 272 68.8
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 5.7e-106 388.3 297 65.3
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 9.8e-106 387.5 275 69.1
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 1.1e-104 384.0 257 71.2
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 1.8e-104 383.3 294 63.3
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.4e-104 382.9 285 65.6
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 3.2e-104 382.5 290 64.5
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 4.1e-104 382.1 283 66.1
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 9.2e-104 380.9 288 65.3
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 1.6e-103 380.2 275 65.5
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 2.0e-103 379.8 294 64.6
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 3.0e-102 375.9 232 77.6
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 6.6e-102 374.8 285 63.5
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 8.6e-102 374.4 277 66.8
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 8.6e-102 374.4 269 66.2
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 1.5e-101 373.6 296 62.2
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 1.9e-101 373.2 292 63.7
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 1.6e-100 370.2 286 62.9
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 2.8e-100 369.4 292 62.7
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 1.8e-99 366.7 259 66.0
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 1.2e-98 364.0 298 59.1
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 2.0e-98 363.2 244 74.2
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 1.1e-96 357.5 227 73.1
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 5.4e-96 355.1 293 59.7
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 7.3e-93 344.7 264 65.9
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 6.2e-92 341.7 286 57.0
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 5.2e-91 338.6 240 71.2
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 8.9e-91 337.8 208 76.0
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 9.9e-90 334.3 382 44.8
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.7e-89 333.6 285 60.4
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 2.2e-89 333.2 279 60.9
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 1.9e-88 330.1 310 55.5
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 4.1e-88 328.9 276 55.1
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 5.4e-88 328.6 239 64.9
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 2.7e-87 326.2 279 58.8
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 4.6e-87 325.5 309 54.0
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 7.8e-87 324.7 276 56.2
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 1.5e-85 320.5 227 65.6
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 1.5e-85 320.5 268 54.5
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 3.3e-85 319.3 243 64.2
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 1.2e-79 300.8 289 56.1
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 1.6e-79 300.4 284 54.9
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 1.5e-77 293.9 247 59.1
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 5.6e-77 292.0 255 57.3
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 9.6e-77 291.2 282 53.2
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 4.7e-76 288.9 267 54.3
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 8.1e-76 288.1 267 54.3
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 1.8e-75 287.0 269 54.3
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 1.8e-75 287.0 269 54.3
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 1.8e-75 287.0 269 54.3
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 3.1e-75 286.2 281 52.7
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 2.0e-74 283.5 191 67.5
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.6e-74 283.1 218 63.3
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 3.4e-74 282.7 269 53.2
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 4.4e-74 282.3 272 53.3
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 4.9e-73 278.9 278 52.2
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 4.9e-73 278.9 263 49.8
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 7.8e-71 271.6 236 55.9
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 3.0e-70 269.6 267 55.1
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 1.5e-69 267.3 216 59.7
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 9.9e-66 254.6 258 51.2
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 1.1e-64 251.1 225 56.0
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 5.3e-59 232.3 198 53.0
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 2.6e-58 229.9 305 44.6
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 1.4e-56 224.2 239 49.8
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 1.6e-55 220.7 137 74.5
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 5.6e-53 212.2 269 43.9
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 6.5e-49 198.7 204 54.9
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 8.2e-44 181.8 133 66.2
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 5.7e-37 159.1 287 35.9
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 2.2e-28 130.6 97 68.0
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 2.2e-28 130.6 119 47.1
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 2.4e-27 127.1 217 34.6
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 5.2e-22 109.4 166 36.1
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 6.3e-20 102.4 77 62.3
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 1.3e-17 94.7 54 75.9
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 6.5e-17 92.4 164 34.1
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 4.7e-15 86.3 106 47.2
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 4.0e-14 83.2 88 48.9
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 1.7e-12 77.8 43 76.7
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 2.8e-12 77.0 48 77.1
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 5.2e-06 56.2 282 22.7


User provided reference genes

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