Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 2.2e-224 781.9 394 100.0
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 6.5e-216 753.8 390 97.2
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 5.7e-204 714.1 395 90.1
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 5.2e-189 664.5 405 83.5
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 1.8e-181 639.4 390 83.3
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 6.0e-169 597.8 390 74.6
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 1.2e-166 590.1 391 73.9
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 2.3e-165 585.9 402 71.1
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 2.0e-164 582.8 390 72.6
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 2.9e-163 578.9 390 71.5
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 1.1e-162 577.0 390 73.3
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 8.6e-160 567.4 390 70.5
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 1.1e-157 560.5 388 71.1
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 2.4e-157 559.3 418 67.7
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 2.4e-157 559.3 391 70.8
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 3.4e-156 555.4 393 66.7
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 9.9e-156 553.9 390 70.0
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 2.9e-155 552.4 392 68.6
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 3.8e-155 552.0 390 67.9
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 1.4e-154 550.1 390 69.2
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 1.9e-154 549.7 283 97.9
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 4.2e-154 548.5 390 67.9
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 1.6e-153 546.6 390 69.2
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 2.3e-152 542.7 390 67.4
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 3.9e-152 542.0 390 68.2
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 3.9e-152 542.0 390 67.7
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 8.7e-152 540.8 390 67.7
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 1.5e-151 540.0 390 67.7
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 1.5e-151 540.0 390 68.5
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.9e-151 539.7 390 66.7
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 5.6e-151 538.1 390 67.2
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.6e-151 538.1 390 67.2
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 7.3e-151 537.7 390 67.4
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 1.6e-150 536.6 386 67.1
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 2.1e-150 536.2 390 68.7
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 1.8e-149 533.1 390 67.4
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 4.0e-149 531.9 390 64.4
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 4.0e-149 531.9 390 65.9
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 9.0e-149 530.8 394 66.0
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 9.0e-149 530.8 390 67.2
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 2.0e-148 529.6 390 66.4
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 2.6e-148 529.3 390 65.6
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 3.4e-148 528.9 390 66.2
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 4.5e-148 528.5 390 66.4
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 1.4e-146 523.5 389 66.8
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 2.4e-146 522.7 390 65.6
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 7.1e-146 521.2 387 65.6
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 9.3e-146 520.8 390 65.1
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 1.6e-145 520.0 390 64.9
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 4.6e-145 518.5 381 67.2
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 6.0e-145 518.1 416 63.0
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 3.9e-144 515.4 390 66.2
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 5.1e-144 515.0 414 62.8
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 5.1e-144 515.0 396 63.9
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 5.1e-144 515.0 394 63.5
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 6.7e-144 514.6 391 66.2
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 8.7e-144 514.2 447 60.0
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 4.3e-143 511.9 396 63.6
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 5.6e-143 511.5 396 63.4
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 5.6e-143 511.5 390 65.4
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 7.4e-143 511.1 394 63.2
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 7.4e-143 511.1 391 63.9
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 1.3e-142 510.4 396 63.9
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 3.7e-142 508.8 392 64.5
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 3.1e-141 505.8 396 63.1
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 3.1e-141 505.8 390 63.3
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 9.0e-141 504.2 394 62.4
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 1.5e-140 503.4 394 61.7
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 2.0e-140 503.1 381 65.6
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 2.6e-140 502.7 394 62.2
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 2.2e-139 499.6 396 62.9
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 2.1e-137 493.0 358 68.4
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 1.3e-136 490.3 392 62.8
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 1.8e-136 490.0 392 62.5
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.9e-135 486.5 425 59.8
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 1.6e-134 483.4 391 60.6
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 3.7e-134 482.3 330 70.0
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 3.7e-134 482.3 502 52.6
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 8.2e-134 481.1 425 58.8
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 1.2e-132 477.2 466 54.5
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 4.6e-129 465.3 391 59.8
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 4.6e-129 465.3 356 64.9
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 5.1e-128 461.8 432 57.4
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 8.7e-128 461.1 358 64.5
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 5.7e-127 458.4 381 63.5
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 1.8e-125 453.4 442 56.1
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 6.5e-123 444.9 390 58.2
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 9.3e-122 441.0 272 82.0
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 4.6e-121 438.7 392 57.4
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 4.8e-118 428.7 312 66.7
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 6.3e-118 428.3 350 60.9
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 3.0e-112 409.5 397 53.9
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 7.7e-108 394.8 360 56.4
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.2e-97 360.9 292 65.1
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 2.3e-96 356.7 397 47.4
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 5.9e-92 342.0 401 45.9
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 5.5e-90 335.5 286 58.4
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 2.3e-88 330.1 249 66.7
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 1.1e-85 321.2 234 66.2
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 1.4e-85 320.9 395 45.1
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 1.0e-80 304.7 234 64.5
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 2.4e-77 293.5 483 36.6
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 2.5e-74 283.5 220 62.7
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 3.9e-67 259.6 372 39.0
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 5.0e-67 259.2 193 68.4
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 8.9e-64 248.4 317 44.5
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 1.4e-48 198.0 142 69.0
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 5.1e-43 179.5 533 27.2
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 2.4e-37 160.6 130 65.4
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 2.1e-33 147.5 108 65.7
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 2.9e-30 137.1 104 60.6
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 5.4e-29 132.9 171 44.4
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.0e-27 128.6 118 55.1
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 1.0e-27 128.6 80 71.2
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.3e-27 128.3 118 55.1
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.0e-27 127.1 118 54.2
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.0e-27 127.1 118 54.2
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.0e-27 127.1 118 54.2
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.5e-26 124.8 118 53.4
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.1e-25 120.9 90 62.2
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-24 118.2 90 61.1
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.4e-24 117.5 90 61.1
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 3.1e-24 117.1 79 65.8
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 7.6e-23 112.5 111 50.5
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.9e-21 107.8 81 61.7
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 2.5e-21 107.5 108 52.8
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 3.2e-21 107.1 141 46.1
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.5e-18 98.2 68 64.7
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.9e-18 97.8 61 70.5
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.9e-18 97.8 61 70.5
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 5.6e-18 96.3 61 68.9
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 7.4e-18 95.9 67 61.2
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 5.3e-16 89.7 60 70.0
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 5.3e-16 89.7 61 67.2
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 9.0e-16 89.0 70 60.0
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 9.0e-16 89.0 128 42.2
Gohir.D10G126550 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.6e-15 87.4 61 63.9
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 1.0e-14 85.5 53 77.4
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 1.3e-14 85.1 59 71.2
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.8e-08 64.7 90 40.0
SEGI_27826 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 1.8e-08 64.7 80 42.5
ClCG05G010860 Citrullus lanatus HOM05D002536 ORTHO05D006290 2.2e-06 57.8 41 63.4
AL2G24330 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 2.9e-06 57.4 34 73.5


User provided reference genes

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