Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.6e-55 219.2 110 100.0
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 2.6e-37 158.7 110 78.2
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 2.6e-37 158.7 110 78.2
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 2.5e-32 142.1 110 70.9
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 7.8e-26 120.6 75 81.3
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 3.9e-25 118.2 75 81.3
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 3.3e-24 115.2 112 60.7
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 2.1e-23 112.5 112 53.6
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 3.6e-23 111.7 109 55.0
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 5.2e-22 107.8 109 55.0
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 2.0e-21 105.9 109 56.9
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 2.0e-21 105.9 109 55.0
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 4.4e-21 104.8 112 54.5
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 9.9e-21 103.6 110 54.5
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 9.9e-21 103.6 109 55.0
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 3.8e-20 101.7 109 53.2
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 4.9e-20 101.3 110 53.6
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 6.4e-20 100.9 109 54.1
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 1.9e-19 99.4 112 52.7
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 2.4e-19 99.0 111 52.3
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 7.1e-19 97.4 110 50.9
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 7.1e-19 97.4 109 50.5
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 9.2e-19 97.1 75 69.3
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.2e-18 96.7 109 49.5
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.2e-18 96.7 109 49.5
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 2.7e-18 95.5 108 50.9
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 2.7e-18 95.5 108 50.9
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 3.5e-18 95.1 110 47.3
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 3.5e-18 95.1 109 50.5
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 6.0e-18 94.4 75 68.0
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 7.8e-18 94.0 111 51.4
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 7.8e-18 94.0 111 50.5
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 3.0e-17 92.0 112 50.0
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 5.1e-17 91.3 108 49.1
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 5.1e-17 91.3 110 47.3
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 6.6e-17 90.9 76 65.8
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 8.7e-17 90.5 109 47.7
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 8.7e-17 90.5 109 51.4
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 1.1e-16 90.1 109 50.5
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 1.5e-16 89.7 111 48.6
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 1.5e-16 89.7 110 49.1
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 1.9e-16 89.4 77 62.3
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 3.3e-16 88.6 109 46.8
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 3.3e-16 88.6 110 48.2
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 3.3e-16 88.6 110 49.1
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 3.3e-16 88.6 109 48.6
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 3.3e-16 88.6 110 50.0
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 4.3e-16 88.2 110 46.4
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 9.6e-16 87.0 109 45.9
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 1.2e-15 86.7 109 46.8
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 1.2e-15 86.7 77 61.0
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 2.1e-15 85.9 109 45.9
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 2.1e-15 85.9 109 45.9
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 2.1e-15 85.9 109 46.8
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 2.8e-15 85.5 109 46.8
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 3.6e-15 85.1 112 46.4
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 3.6e-15 85.1 111 46.8
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 4.7e-15 84.7 111 48.6
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 4.7e-15 84.7 109 44.0
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 4.7e-15 84.7 109 47.7
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 6.2e-15 84.3 110 43.6
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 1.1e-14 83.6 112 47.3
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 1.4e-14 83.2 115 47.0
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 1.4e-14 83.2 109 45.9
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.4e-14 83.2 110 46.4
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.4e-14 83.2 109 44.0
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 1.4e-14 83.2 111 45.9
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 1.4e-14 83.2 113 49.6
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.4e-14 83.2 110 47.3
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.8e-14 82.8 108 48.1
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.8e-14 82.8 108 48.1
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.4e-14 82.4 75 57.3
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 3.1e-14 82.0 109 45.9
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 3.1e-14 82.0 109 43.1
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 3.1e-14 82.0 113 46.0
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 3.1e-14 82.0 109 43.1
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 4.0e-14 81.6 107 46.7
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 4.0e-14 81.6 107 46.7
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 4.0e-14 81.6 111 45.0
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 5.2e-14 81.3 78 60.3
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 5.2e-14 81.3 109 45.9
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 5.2e-14 81.3 109 45.9
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 5.2e-14 81.3 108 48.1
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 5.2e-14 81.3 110 45.5
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 6.9e-14 80.9 110 47.3
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 6.9e-14 80.9 108 43.5
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 9.0e-14 80.5 110 46.4
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 9.0e-14 80.5 110 42.7
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 1.2e-13 80.1 109 41.3
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 1.2e-13 80.1 105 47.6
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 1.2e-13 80.1 108 47.2
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 1.5e-13 79.7 108 44.4
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 1.5e-13 79.7 107 45.8
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 2.6e-13 79.0 109 45.0
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 2.6e-13 79.0 112 44.6
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 2.6e-13 79.0 108 46.3
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 3.4e-13 78.6 111 44.1
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 4.4e-13 78.2 110 40.9
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 4.4e-13 78.2 109 40.4
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 5.8e-13 77.8 113 44.2
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 7.6e-13 77.4 76 57.9
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 7.6e-13 77.4 75 57.3
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 9.9e-13 77.0 110 44.5
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 9.9e-13 77.0 110 42.7
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 9.9e-13 77.0 113 46.0
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 9.9e-13 77.0 113 46.0
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.3e-12 76.6 111 45.0
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 1.7e-12 76.3 109 42.2
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.7e-12 76.3 113 46.0
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 2.2e-12 75.9 75 54.7
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.2e-12 75.9 113 46.0
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 2.9e-12 75.5 86 48.8
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 2.9e-12 75.5 106 43.4
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 2.9e-12 75.5 109 44.0
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.8e-12 75.1 113 45.1
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 4.9e-12 74.7 111 40.5
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 4.9e-12 74.7 75 54.7
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 6.4e-12 74.3 75 60.0
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 1.1e-11 73.6 112 42.0
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.4e-11 73.2 83 48.2
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.4e-11 73.2 75 56.0
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 1.9e-11 72.8 109 46.8
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.4e-11 72.4 75 56.0
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 5.4e-11 71.2 104 44.2
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 9.3e-11 70.5 76 57.9
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 1.6e-10 69.7 75 50.7
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 2.1e-10 69.3 75 53.3
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 2.1e-10 69.3 116 38.8
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 3.5e-10 68.6 75 49.3
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 4.6e-10 68.2 77 53.2
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 1.0e-09 67.0 69 49.3
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.7e-09 66.2 78 48.7
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.7e-09 66.2 77 53.2
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 1.7e-09 66.2 76 51.3
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 1.7e-09 66.2 75 49.3
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 3.0e-09 65.5 75 50.7
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 1.6e-07 59.7 35 71.4
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 1.6e-07 59.7 35 71.4


User provided reference genes

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