Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 6.4e-143 511.1 341 100.0
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 8.1e-138 494.2 341 93.3
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 8.6e-132 474.2 341 90.3
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 6.8e-121 438.0 293 87.7
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 7.6e-120 434.5 273 87.2
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 9.3e-118 427.6 289 81.7
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 1.3e-103 380.6 289 67.8
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 3.0e-100 369.4 289 67.1
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.8e-97 360.1 289 65.1
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 2.6e-96 356.3 291 72.5
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 3.4e-96 355.9 253 80.6
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 1.3e-95 354.0 289 64.7
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 1.1e-94 350.9 302 63.2
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.4e-89 333.2 324 57.4
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.4e-89 333.2 324 57.4
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 3.1e-89 332.8 241 69.7
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 3.4e-88 329.3 291 65.3
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 6.5e-87 325.1 295 62.7
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 2.5e-86 323.2 324 57.7
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 1.3e-84 317.4 290 60.3
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 6.3e-82 308.5 291 58.4
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 4.1e-81 305.8 289 57.8
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 9.0e-81 304.7 308 56.5
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 2.2e-79 300.1 295 57.3
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 2.9e-79 299.7 294 59.2
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.1e-78 297.7 291 57.0
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.4e-78 297.4 291 57.0
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 1.4e-78 297.4 295 57.6
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 2.5e-78 296.6 294 60.2
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 3.2e-78 296.2 291 57.0
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 4.2e-78 295.8 289 58.5
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 9.4e-78 294.7 288 61.1
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 4.6e-77 292.4 290 56.6
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 1.4e-76 290.8 305 57.0
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 1.8e-76 290.4 294 58.5
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 3.9e-76 289.3 300 55.7
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 2.4e-73 280.0 311 53.1
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 5.3e-73 278.9 298 55.0
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 2.6e-72 276.6 298 53.4
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 2.6e-72 276.6 284 58.5
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 1.3e-71 274.2 311 53.1
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 2.2e-71 273.5 297 55.6
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.1e-70 271.2 288 54.5
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 1.9e-70 270.4 295 53.9
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 1.6e-69 267.3 290 54.5
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.1e-69 266.9 283 54.8
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.8e-68 263.8 216 64.4
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 5.2e-68 262.3 293 53.2
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 5.2e-68 262.3 301 51.8
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 6.7e-68 261.9 290 53.4
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 8.8e-68 261.5 290 53.4
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 8.8e-68 261.5 287 53.3
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 2.0e-67 260.4 298 52.3
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.0e-67 260.4 287 52.6
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 2.6e-67 260.0 295 59.0
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 2.6e-67 260.0 285 54.7
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 4.4e-67 259.2 289 50.5
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 7.4e-67 258.5 287 53.3
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 9.7e-67 258.1 287 52.3
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 9.7e-67 258.1 287 52.3
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 2.8e-66 256.5 303 52.5
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 2.8e-66 256.5 264 54.5
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 6.3e-66 255.4 287 52.3
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 1.4e-65 254.2 287 51.2
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.8e-65 253.8 288 54.2
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 2.4e-65 253.4 286 54.9
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 3.1e-65 253.1 285 51.6
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 5.3e-65 252.3 292 52.7
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 1.2e-64 251.1 296 52.7
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 1.2e-64 251.1 289 52.6
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 3.5e-64 249.6 286 53.1
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 7.7e-64 248.4 290 50.7
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 1.3e-63 247.7 286 52.8
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 1.9e-62 243.8 305 55.7
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 2.5e-62 243.4 296 50.0
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 9.4e-62 241.5 295 51.9
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 9.4e-62 241.5 255 55.3
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.6e-61 240.7 284 49.6
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 2.1e-61 240.4 287 48.8
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 2.1e-61 240.4 289 50.2
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 2.1e-61 240.4 294 51.0
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 2.7e-61 240.0 289 49.8
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.0e-60 238.0 295 51.9
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.8e-60 237.3 231 58.0
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.8e-60 237.3 231 58.0
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 6.7e-60 235.3 293 50.9
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 8.8e-60 235.0 289 47.8
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 1.2e-59 234.6 292 49.0
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 2.6e-59 233.4 300 48.0
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 2.6e-59 233.4 300 46.3
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 9.7e-59 231.5 289 48.4
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 4.8e-58 229.2 294 49.7
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 3.1e-57 226.5 289 47.8
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 3.1e-57 226.5 268 50.0
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 4.1e-57 226.1 289 47.4
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 4.1e-57 226.1 253 54.2
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 7.0e-57 225.3 294 49.3
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 7.0e-57 225.3 289 47.8
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 7.0e-57 225.3 342 42.7
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 1.6e-56 224.2 297 48.8
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 1.6e-56 224.2 297 48.8
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 3.5e-56 223.0 187 65.2
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 4.5e-56 222.6 230 57.0
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 7.7e-56 221.9 169 68.0
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 1.3e-55 221.1 299 48.2
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 1.7e-55 220.7 293 47.8
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 5.0e-55 219.2 293 48.1
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 1.1e-54 218.0 299 46.2
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 1.1e-54 218.0 293 47.1
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 1.9e-54 217.2 296 49.7
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 3.2e-54 216.5 295 51.5
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 4.2e-54 216.1 297 49.5
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 5.5e-54 215.7 296 47.0
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 9.4e-54 214.9 292 47.6
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 9.4e-54 214.9 291 48.8
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 9.4e-54 214.9 296 49.0
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 2.1e-53 213.8 125 82.4
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 2.7e-53 213.4 296 48.6
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 1.0e-52 211.5 300 50.7
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.0e-52 211.5 299 47.8
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 1.8e-52 210.7 296 53.0
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 1.8e-52 210.7 295 48.1
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 6.8e-52 208.8 299 49.5
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 2.6e-51 206.8 293 47.4
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 9.8e-51 204.9 291 49.8
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 2.8e-50 203.4 300 49.3
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 1.4e-49 201.1 293 48.1
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 3.1e-49 199.9 300 45.0
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 9.1e-49 198.4 291 46.0
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.6e-48 197.6 267 48.7
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.0e-48 197.2 166 62.7
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 1.0e-47 194.9 119 75.6
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 6.8e-44 182.2 288 44.1
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.2e-43 181.4 247 47.0
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 2.0e-43 180.6 299 42.1
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 5.7e-43 179.1 166 59.0
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.3e-42 177.9 296 39.9
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 2.4e-41 173.7 187 52.4
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 4.1e-41 172.9 293 40.6
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 3.3e-38 163.3 295 38.3
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 5.6e-38 162.5 118 68.6
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 3.6e-37 159.8 294 40.8
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.4e-33 147.9 227 43.6
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.8e-33 147.5 123 60.2
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 4.1e-33 146.4 118 61.9
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 4.1e-33 146.4 118 61.9
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 1.2e-32 144.8 180 46.7
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.9e-30 137.5 119 59.7
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 3.3e-30 136.7 126 57.1
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 7.3e-30 135.6 119 59.7
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 1.2e-24 118.2 75 76.0
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.3e-23 114.8 150 48.0
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 3.0e-23 113.6 147 49.0
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 1.2e-21 108.2 247 32.8
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 6.4e-18 95.9 185 40.0
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 2.8e-13 80.5 116 43.1
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 1.1e-12 78.6 148 42.6
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.2e-11 75.1 55 61.8
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.0e-07 62.0 98 42.9
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.3e-07 61.6 46 63.0
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 1.3e-07 61.6 98 37.8


User provided reference genes

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