Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 9.4e-104 380.2 189 100.0
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 5.2e-102 374.4 189 97.9
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 5.2e-102 374.4 189 97.9
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 1.4e-99 366.3 189 95.2
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 2.4e-99 365.5 189 95.2
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 2.7e-87 325.5 189 87.3
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 2.8e-76 288.9 186 73.7
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 8.3e-76 287.3 150 94.7
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 5.4e-75 284.6 186 74.7
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 2.0e-74 282.7 189 73.5
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 1.7e-73 279.6 186 73.1
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 1.5e-72 276.6 189 77.2
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 1.9e-72 276.2 186 70.4
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 5.6e-72 274.6 189 69.3
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 4.7e-71 271.6 185 69.2
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 2.3e-70 269.2 189 69.3
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 2.3e-70 269.2 187 70.6
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 1.2e-69 266.9 189 69.8
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 1.5e-69 266.5 189 68.8
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 2.0e-69 266.2 186 68.3
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 7.5e-69 264.2 189 69.3
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 1.3e-68 263.5 187 68.4
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 2.2e-68 262.7 187 68.4
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 2.9e-68 262.3 187 67.9
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 4.1e-67 258.5 187 67.4
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 1.2e-66 256.9 187 68.4
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 6.0e-66 254.6 187 65.8
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 6.8e-62 241.1 189 65.1
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 3.4e-61 238.8 189 61.9
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 7.5e-61 237.7 189 65.6
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 3.7e-60 235.3 202 60.4
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 1.4e-59 233.4 189 64.6
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 1.4e-59 233.4 186 62.4
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 1.9e-59 233.0 188 62.8
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 2.4e-59 232.6 189 61.4
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 3.2e-59 232.3 189 60.8
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 4.1e-59 231.9 188 62.2
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 1.2e-58 230.3 189 64.0
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 1.2e-58 230.3 189 64.0
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 1.2e-58 230.3 189 64.0
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 2.1e-58 229.6 189 63.5
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 2.7e-58 229.2 189 64.0
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.3e-57 226.9 185 62.2
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.3e-57 226.9 185 62.2
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 1.7e-57 226.5 185 62.2
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 2.3e-57 226.1 185 61.6
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 2.3e-57 226.1 189 60.8
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 6.6e-57 224.6 189 59.3
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 6.6e-57 224.6 182 61.5
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 8.6e-57 224.2 166 66.9
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 8.6e-57 224.2 189 59.3
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 1.1e-56 223.8 189 60.3
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 1.5e-56 223.4 189 59.8
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 2.5e-56 222.6 189 60.3
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 2.5e-56 222.6 189 60.3
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 2.5e-56 222.6 189 58.7
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 3.3e-56 222.2 189 59.3
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 3.3e-56 222.2 185 57.8
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 4.3e-56 221.9 186 59.1
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 4.3e-56 221.9 186 60.2
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 5.6e-56 221.5 189 61.4
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 5.6e-56 221.5 189 61.4
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 7.3e-56 221.1 189 63.5
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 7.3e-56 221.1 189 61.4
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 9.5e-56 220.7 189 58.7
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 9.5e-56 220.7 189 64.0
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 1.2e-55 220.3 189 60.8
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 1.6e-55 219.9 189 58.7
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 1.6e-55 219.9 189 61.9
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 1.6e-55 219.9 189 61.4
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 1.6e-55 219.9 185 62.2
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 2.1e-55 219.5 189 61.9
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 2.1e-55 219.5 189 63.0
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 2.1e-55 219.5 195 59.0
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 2.8e-55 219.2 185 60.5
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 3.6e-55 218.8 188 58.5
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 1.1e-54 217.2 174 62.6
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 1.8e-54 216.5 189 58.2
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 2.3e-54 216.1 189 57.7
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.3e-54 216.1 185 62.2
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 2.3e-54 216.1 189 58.2
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 2.3e-54 216.1 185 59.5
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 4.0e-54 215.3 185 60.5
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 5.2e-54 214.9 189 58.2
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 5.2e-54 214.9 185 58.9
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 6.8e-54 214.5 189 56.6
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 1.2e-53 213.8 189 57.7
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 1.5e-53 213.4 177 59.9
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 1.5e-53 213.4 189 57.7
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 2.6e-53 212.6 185 60.0
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 2.6e-53 212.6 191 57.1
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 4.4e-53 211.8 185 59.5
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 5.8e-53 211.5 189 58.7
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 7.5e-53 211.1 185 60.0
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 7.5e-53 211.1 185 58.9
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 7.5e-53 211.1 189 58.2
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 9.9e-53 210.7 184 59.8
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 1.7e-52 209.9 182 60.4
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 1.7e-52 209.9 182 60.4
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 1.7e-52 209.9 182 60.4
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 1.7e-52 209.9 185 58.9
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 8.3e-52 207.6 181 59.7
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 1.1e-51 207.2 152 65.8
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 3.2e-51 205.7 187 53.5
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 4.1e-51 205.3 189 59.8
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 9.2e-51 204.1 186 55.9
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 9.2e-51 204.1 186 55.9
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 4.6e-50 201.8 186 53.2
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 1.3e-49 200.3 186 54.8
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 3.9e-49 198.7 186 54.3
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 1.1e-48 197.2 186 54.8
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 1.2e-47 193.7 210 51.0
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 3.6e-47 192.2 172 59.3
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 5.8e-45 184.9 168 59.5
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 1.4e-43 180.3 184 48.4
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 3.2e-43 179.1 151 60.3
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 2.7e-42 176.0 201 50.7
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 6.6e-41 171.4 187 44.9
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 8.7e-41 171.0 185 45.9
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 2.5e-40 169.5 185 51.9
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 8.1e-39 164.5 189 52.9
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.4e-38 163.7 150 56.7
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.6e-34 150.2 185 42.2
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 7.8e-34 147.9 154 55.8
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 5.1e-33 145.2 187 38.5
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 4.3e-32 142.1 185 41.1
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 8.1e-31 137.9 150 52.0
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 4.6e-26 122.1 106 61.3
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 3.3e-24 115.9 115 53.9
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 1.1e-22 110.9 119 49.6
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 3.1e-22 109.4 100 57.0
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 7.6e-21 104.8 154 42.2
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 4.9e-20 102.1 124 43.5
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 1.4e-19 100.5 169 34.3
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 3.9e-17 92.4 106 43.4
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 2.5e-16 89.7 73 56.2
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 3.3e-16 89.4 188 33.0
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 2.1e-15 86.7 83 59.0
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 4.0e-14 82.4 67 58.2
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 1.0e-12 77.8 71 53.5
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 1.3e-09 67.4 175 26.3
Nitab4.5_0000011g0270 Nicotiana tabacum HOM05D005619 ORTHO05D006696 6.3e-07 58.5 29 82.8


User provided reference genes

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