Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 6.5e-128 460.7 225 100.0
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 7.2e-127 457.2 225 99.1
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 1.2e-126 456.4 225 98.7
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 2.2e-120 435.6 225 94.2
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 2.2e-120 435.6 223 93.7
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 3.2e-119 431.8 225 92.0
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 2.3e-109 399.1 225 85.3
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 3.7e-107 391.7 266 75.6
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 4.9e-107 391.3 225 83.1
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 4.9e-107 391.3 225 83.1
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 1.8e-106 389.4 225 83.1
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 3.1e-106 388.7 225 82.7
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 7.0e-106 387.5 225 81.8
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 1.6e-105 386.3 225 84.4
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.0e-105 386.0 226 83.6
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.0e-105 386.0 226 83.6
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 2.7e-105 385.6 225 80.9
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 4.5e-105 384.8 225 82.2
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 5.9e-105 384.4 225 80.9
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 7.7e-105 384.0 226 83.2
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 1.0e-104 383.6 225 78.7
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 1.7e-104 382.9 225 83.1
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 1.1e-103 380.2 225 80.4
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 1.9e-103 379.4 225 79.1
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 2.5e-103 379.0 226 79.2
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 4.2e-103 378.3 225 81.8
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 4.2e-103 378.3 224 81.2
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 7.2e-103 377.5 225 80.0
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 1.2e-102 376.7 225 77.3
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.8e-102 375.6 225 77.3
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 2.8e-102 375.6 225 76.9
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 1.0e-101 373.6 224 79.5
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 3.0e-101 372.1 225 79.6
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 1.2e-100 370.2 225 77.3
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.5e-100 369.8 225 78.7
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.0e-100 369.4 225 76.9
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.0e-100 369.4 225 76.9
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 2.0e-100 369.4 225 78.2
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 2.6e-100 369.0 225 77.3
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 3.4e-100 368.6 225 77.8
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 4.4e-100 368.2 225 76.0
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 5.7e-100 367.9 225 76.9
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 9.8e-100 367.1 225 75.6
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 1.3e-99 366.7 225 76.0
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 1.7e-99 366.3 225 76.0
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.8e-98 362.8 225 77.3
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 3.2e-98 362.1 225 76.4
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 4.1e-98 361.7 225 76.0
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 2.0e-97 359.4 225 76.4
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 2.7e-97 359.0 225 76.0
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.5e-97 358.6 225 76.9
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 4.6e-97 358.2 225 76.9
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 7.8e-97 357.5 226 76.1
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.0e-96 357.1 225 76.4
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 3.9e-96 355.1 225 76.0
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 5.0e-96 354.8 225 74.7
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 5.0e-96 354.8 225 74.2
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 5.0e-96 354.8 225 75.1
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 5.0e-96 354.8 225 76.9
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 6.6e-96 354.4 223 74.4
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 2.8e-94 349.0 279 62.7
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 3.1e-93 345.5 225 73.3
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 3.1e-93 345.5 225 72.4
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 4.0e-93 345.1 225 72.9
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 2.0e-92 342.8 225 72.4
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 2.0e-92 342.8 208 78.8
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 2.6e-92 342.4 197 81.2
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 3.4e-92 342.0 225 71.1
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 7.5e-92 340.9 197 82.2
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 9.8e-92 340.5 225 72.0
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 1.3e-91 340.1 225 72.4
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 1.7e-91 339.7 260 65.4
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 3.7e-91 338.6 225 72.4
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 6.4e-91 337.8 227 72.2
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 8.3e-91 337.4 225 71.6
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 8.3e-91 337.4 225 71.1
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 1.1e-90 337.0 225 71.1
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 1.9e-90 336.3 225 71.1
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 2.4e-90 335.9 225 71.1
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 2.4e-90 335.9 225 71.1
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 4.1e-90 335.1 225 72.0
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 5.4e-90 334.7 225 70.7
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 2.0e-89 332.8 228 71.5
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 7.8e-89 330.9 225 69.8
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 1.0e-88 330.5 225 69.8
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 1.0e-88 330.5 225 69.3
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 1.3e-88 330.1 225 70.2
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 2.3e-88 329.3 225 69.3
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 6.6e-88 327.8 225 69.8
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 1.9e-87 326.2 225 69.8
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 2.8e-86 322.4 217 72.4
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 4.7e-86 321.6 226 69.0
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 4.0e-85 318.5 232 66.4
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 1.5e-84 316.6 227 68.3
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 1.5e-84 316.6 227 67.8
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 2.0e-84 316.2 228 67.5
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 2.6e-84 315.8 225 67.6
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 9.8e-84 313.9 225 69.3
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 2.9e-83 312.4 225 68.9
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 6.4e-83 311.2 225 68.0
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 4.6e-81 305.1 225 64.9
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 2.3e-80 302.8 225 64.9
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 3.9e-80 302.0 225 67.1
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 6.6e-80 301.2 225 64.9
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 6.6e-80 301.2 225 64.9
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 9.5e-79 297.4 177 78.5
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 5.2e-77 291.6 225 68.9
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 2.6e-76 289.3 225 60.9
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 2.4e-74 282.7 228 61.4
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 6.0e-73 278.1 262 56.9
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 6.0e-73 278.1 262 56.9
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 6.6e-72 274.6 228 60.5
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 3.3e-71 272.3 225 63.6
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 6.2e-70 268.1 226 59.3
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 5.2e-69 265.0 210 60.5
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 2.6e-68 262.7 174 71.3
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 2.4e-66 256.1 229 60.7
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 1.5e-63 246.9 245 52.7
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 1.6e-62 243.4 250 55.2
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 1.3e-59 233.8 225 51.6
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 2.7e-57 226.1 164 67.7
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 1.9e-55 219.9 225 49.8
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 9.9e-52 207.6 226 47.3
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 1.0e-48 197.6 226 46.0
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.3e-48 197.2 122 72.1
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 2.9e-43 179.5 231 43.7
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 3.2e-42 176.0 228 43.9
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 4.2e-42 175.6 215 42.8
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 2.8e-38 162.9 130 63.1
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.4e-37 160.6 100 74.0
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.4e-37 160.6 100 74.0
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 6.5e-35 151.8 195 46.2
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 8.7e-32 141.4 150 52.0
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 2.2e-27 126.7 72 75.0
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 1.5e-20 104.0 65 66.2
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.3e-19 100.9 51 90.2
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.3e-19 100.9 51 90.2
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.7e-19 100.5 57 86.0
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.9e-19 99.8 51 90.2
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 6.5e-19 98.6 105 50.5
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 7.9e-17 91.7 122 45.1
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 7.9e-17 91.7 75 56.0
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 1.1e-15 87.8 79 55.7
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 3.7e-14 82.8 76 59.2
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 5.3e-13 79.0 51 74.5
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.2e-12 77.8 51 78.4
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 6.5e-11 72.0 223 28.3
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 9.4e-10 68.2 37 83.8
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 8.0e-09 65.1 51 62.7
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 1.8e-08 63.9 51 60.8


User provided reference genes

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