Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 4.3e-164 581.3 296 100.0
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 5.0e-160 567.8 296 97.6
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 1.9e-159 565.8 296 97.0
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 8.0e-150 533.9 298 91.3
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 5.9e-145 517.7 294 89.8
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.7e-142 508.8 283 91.5
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 2.0e-140 502.7 297 85.2
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 1.3e-123 446.8 295 75.6
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 5.4e-122 441.4 298 75.2
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 1.0e-120 437.2 295 75.3
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 2.3e-120 436.0 295 75.3
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 3.9e-120 435.3 279 78.5
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 9.5e-119 430.6 295 73.9
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 9.5e-119 430.6 295 73.9
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 1.2e-118 430.3 298 73.2
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 1.2e-118 430.3 295 73.2
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 1.6e-118 429.9 299 74.6
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 4.7e-118 428.3 295 73.6
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 1.4e-117 426.8 285 75.4
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 2.3e-117 426.0 298 73.5
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 2.3e-117 426.0 296 73.6
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 8.9e-117 424.1 301 71.4
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 2.0e-116 422.9 297 72.7
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 2.6e-116 422.5 296 73.3
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 4.4e-116 421.8 295 71.5
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 9.8e-116 420.6 295 72.2
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 3.7e-115 418.7 295 71.5
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 6.4e-115 417.9 295 71.5
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 8.3e-115 417.5 295 72.2
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 3.2e-114 415.6 298 71.8
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 4.1e-114 415.2 295 72.5
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 4.1e-114 415.2 295 70.8
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 5.4e-114 414.8 295 70.5
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 5.4e-114 414.8 297 71.7
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 7.8e-113 411.0 295 70.2
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 1.3e-112 410.2 295 71.2
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 1.3e-112 410.2 295 69.8
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 1.7e-112 409.8 295 69.8
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.3e-112 409.5 297 72.7
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 5.0e-112 408.3 295 70.8
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 5.0e-112 408.3 298 70.8
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 8.6e-112 407.5 298 71.1
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 1.9e-111 406.4 296 69.3
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 1.2e-110 403.7 295 70.8
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 3.6e-110 402.1 299 68.9
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 6.2e-110 401.4 299 67.9
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 8.1e-110 401.0 319 65.8
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 2.3e-109 399.4 301 67.4
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 8.9e-109 397.5 296 69.9
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 1.5e-108 396.7 298 69.8
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 1.5e-108 396.7 297 70.0
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 3.4e-108 395.6 310 68.4
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 3.4e-108 395.6 295 68.5
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 3.4e-108 395.6 300 67.7
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 3.4e-108 395.6 253 78.3
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 7.5e-108 394.4 298 69.1
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 7.5e-108 394.4 301 68.1
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 9.8e-108 394.0 295 68.5
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 1.3e-107 393.7 298 65.8
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.7e-107 393.3 296 67.9
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 2.9e-107 392.5 298 65.4
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 4.9e-107 391.7 314 66.2
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 4.9e-107 391.7 300 66.7
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 6.4e-107 391.3 246 77.6
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 8.3e-107 391.0 299 67.2
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 8.3e-107 391.0 300 67.3
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 1.9e-106 389.8 253 77.9
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 3.2e-106 389.0 261 74.7
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 7.1e-106 387.9 245 78.0
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 1.2e-105 387.1 300 70.0
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 2.1e-105 386.3 256 74.2
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 2.1e-105 386.3 296 69.3
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 1.0e-104 384.0 298 68.8
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 2.3e-104 382.9 305 65.6
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 6.6e-104 381.3 334 62.3
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 8.6e-104 380.9 296 66.9
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 8.6e-104 380.9 295 65.4
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 8.6e-104 380.9 295 65.4
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 8.6e-104 380.9 295 65.4
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 8.6e-104 380.9 295 65.4
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 8.6e-104 380.9 228 79.4
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 1.5e-103 380.2 296 66.9
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 2.5e-103 379.4 255 72.9
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 2.5e-103 379.4 297 67.3
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 3.3e-103 379.0 295 65.1
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 7.3e-103 377.9 255 72.9
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 9.5e-103 377.5 295 65.4
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 1.2e-102 377.1 255 72.5
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 1.6e-102 376.7 366 57.9
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 2.8e-102 375.9 295 65.1
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 3.6e-102 375.6 256 72.7
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 3.6e-102 375.6 299 67.2
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 1.4e-101 373.6 290 67.2
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 1.4e-101 373.6 296 63.5
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 2.3e-101 372.9 299 66.2
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 5.2e-101 371.7 297 67.0
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 7.6e-100 367.9 275 68.4
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 9.9e-100 367.5 424 52.8
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 1.1e-98 364.0 219 81.7
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 5.4e-98 361.7 297 67.0
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 4.6e-97 358.6 300 63.7
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 4.6e-97 358.6 300 63.0
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 4.6e-97 358.6 285 66.3
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 6.0e-97 358.2 278 66.2
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 7.8e-97 357.8 295 64.7
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 1.3e-96 357.1 297 63.6
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 1.1e-95 354.0 224 75.4
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 1.5e-95 353.6 345 56.5
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 6.4e-91 338.2 301 61.1
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 1.4e-90 337.0 274 63.1
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.9e-90 336.7 259 68.3
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 1.9e-90 336.7 295 61.0
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 3.2e-90 335.9 294 60.2
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 7.8e-89 331.3 294 59.5
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 3.9e-88 328.9 254 66.1
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 2.8e-86 322.8 264 63.6
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 6.2e-86 321.6 261 64.0
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 2.2e-83 313.2 226 66.8
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 9.3e-82 307.8 226 67.7
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 2.7e-81 306.2 260 64.6
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 9.6e-79 297.7 233 64.4
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 6.2e-78 295.0 223 62.8
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.4e-77 293.9 207 72.0
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 7.1e-74 281.6 219 63.9
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 7.6e-68 261.5 259 51.7
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 4.9e-67 258.8 288 53.1
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 1.3e-64 250.8 230 58.7
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 4.3e-63 245.7 140 82.9
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 1.3e-62 244.2 140 84.3
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.1e-62 243.4 132 88.6
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 4.1e-61 239.2 216 55.1
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.2e-57 227.6 236 48.7
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 4.6e-57 225.7 220 51.4
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.2e-49 201.1 300 39.7
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.4e-48 197.6 241 43.6
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 1.4e-48 197.6 156 69.9
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 6.7e-48 195.3 250 42.4
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 6.7e-48 195.3 142 67.6
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 1.7e-46 190.7 161 62.1
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 3.1e-45 186.4 168 61.9
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 2.5e-42 176.8 110 77.3
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 4.7e-41 172.6 138 67.4
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.0e-36 157.1 97 79.4
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 7.7e-36 155.2 109 65.1
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 4.2e-34 149.4 97 77.3
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 3.7e-30 136.3 107 69.2
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 1.1e-26 124.8 81 76.5
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 5.5e-26 122.5 92 67.4
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 8.8e-24 115.2 155 47.7
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 1.8e-21 107.5 67 76.1
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 1.7e-19 100.9 120 45.0


User provided reference genes

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