Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400030321 Solanum tuberosum HOM05D002160 ORTHO05D002012 5.0e-24 114.0 75 100.0
Sopen06g032540 Solanum pennellii HOM05D002160 ORTHO05D002012 2.1e-22 108.6 78 93.6
Solyc06g076140.4 Solanum lycopersicum HOM05D002160 ORTHO05D002012 3.6e-22 107.8 75 98.7
CAN.G394.56 Capsicum annuum HOM05D002160 ORTHO05D002012 8.8e-21 103.2 78 80.8
Peaxi162Scf00774g00011 Petunia axillaris HOM05D002160 ORTHO05D002012 1.5e-20 102.4 78 92.3
Nitab4.5_0002557g0020 Nicotiana tabacum HOM05D002160 ORTHO05D002012 9.1e-18 93.2 75 85.3
CAN.G405.1 Capsicum annuum HOM05D002160 ORTHO05D002012 2.6e-17 91.7 76 73.7
Peaxi162Scf00946g00028 Petunia axillaris HOM05D002160 ORTHO05D002012 2.6e-17 91.7 78 75.6
Solyc04g058150.3 Solanum lycopersicum HOM05D002160 ORTHO05D002012 5.9e-17 90.5 75 86.7
Sopen04g026050 Solanum pennellii HOM05D002160 ORTHO05D002012 5.9e-17 90.5 75 86.7
Sopen04g025910 Solanum pennellii HOM05D002160 ORTHO05D002012 6.5e-16 87.0 75 78.7
Solyc04g058100.3 Solanum lycopersicum HOM05D002160 ORTHO05D002012 1.1e-15 86.3 75 78.7
Nitab4.5_0000317g0020 Nicotiana tabacum HOM05D002160 ORTHO05D002012 7.2e-15 83.6 99 56.6
Dinv17000 Davidia involucrata HOM05D002160 ORTHO05D002012 9.4e-15 83.2 78 70.5
Dinv42949 Davidia involucrata HOM05D002160 ORTHO05D002012 9.4e-15 83.2 78 70.5
Dinv43151 Davidia involucrata HOM05D002160 ORTHO05D002012 9.4e-15 83.2 78 70.5
Dinv12424 Davidia involucrata HOM05D002160 ORTHO05D002012 4.7e-14 80.9 78 69.2
Solyc06g005465.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 1.8e-13 79.0 78 69.2
Nitab4.5_0022803g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 2.6e-12 75.1 75 69.3
CAN.G111.42 Capsicum annuum HOM05D002160 ORTHO05D002012 3.7e-11 71.2 78 64.1
CSS0035762 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 4.8e-11 70.9 79 60.8
Hma1.2p1_0418F.1_g149080 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 8.3e-11 70.1 79 59.5
Sopen06g001440 Solanum pennellii HOM05D002160 ORTHO05D002012 8.3e-11 70.1 78 64.1
Hma1.2p1_0035F.1_g022400 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 1.1e-10 69.7 79 58.2
CSS0001348 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.8e-10 68.9 79 59.5
HanXRQChr11g0350841 Helianthus annuus HOM05D002160 ORTHO05D002012 2.4e-10 68.6 78 60.3
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 2.4e-10 68.6 77 61.0
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 3.1e-10 68.2 77 61.0
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 7.0e-10 67.0 77 59.7
MBI14_g20107_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 7.0e-10 67.0 78 59.0
Rhsim04G0157100 Rhododendron simsii HOM05D002160 ORTHO05D002012 2.0e-09 65.5 74 62.2
Cc01_g12850 Coffea canephora HOM05D002160 ORTHO05D002012 2.7e-09 65.1 77 54.5
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 2.7e-09 65.1 79 57.0
ECA247G1660 Erigeron canadensis HOM05D002160 ORTHO05D002012 5.9e-09 63.9 78 56.4
Nitab4.5_0003635g0040 Nicotiana tabacum HOM05D002160 ORTHO05D002012 5.9e-09 63.9 66 51.5
Potri.001G239650 Populus trichocarpa HOM05D002160 ORTHO05D002012 5.9e-09 63.9 77 59.7
Dinv37174 Davidia involucrata HOM05D002160 ORTHO05D002012 7.7e-09 63.5 80 58.8
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 7.7e-09 63.5 77 55.8
Hma1.2p1_0035F.1_g022410 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 1.0e-08 63.2 81 45.7
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 1.7e-08 62.4 79 60.8
Cfa017382 Carpinus fangiana HOM05D002160 ORTHO05D002012 2.2e-08 62.0 77 64.9
CiPaw.03G262000 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.2e-08 62.0 77 42.9
CiPaw.13G094600 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.2e-08 62.0 80 58.8
Haze_20789 Corylus avellana HOM05D002160 ORTHO05D002012 2.2e-08 62.0 77 66.2
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.2e-08 62.0 77 58.4
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.2e-08 62.0 77 58.4
Manes.02G133200 Manihot esculenta HOM05D002160 ORTHO05D002012 2.2e-08 62.0 77 70.1
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 2.9e-08 61.6 77 57.1
ECA236G3652 Erigeron canadensis HOM05D002160 ORTHO05D002012 2.9e-08 61.6 79 54.4
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.9e-08 61.6 77 57.1
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 2.9e-08 61.6 79 59.5
Prupe.6G255100 Prunus persica HOM05D002160 ORTHO05D002012 2.9e-08 61.6 82 57.3
GSVIVG01034174001 Vitis vinifera HOM05D002160 ORTHO05D002012 2.9e-08 61.6 78 56.4
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 3.8e-08 61.2 81 59.3
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 3.8e-08 61.2 80 53.8
DCAR_005972 Daucus carota HOM05D002160 ORTHO05D002012 3.8e-08 61.2 60 70.0
Lsat_1_v5_gn_9_23460 Lactuca sativa HOM05D002160 ORTHO05D002012 3.8e-08 61.2 78 52.6
AL6G11600 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 5.0e-08 60.8 76 56.6
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 5.0e-08 60.8 77 54.5
Carub.0006s0117 Capsella rubella HOM05D002160 ORTHO05D002012 5.0e-08 60.8 76 56.6
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 5.0e-08 60.8 77 55.8
Oeu007792.1 Olea europaea HOM05D002160 ORTHO05D002012 6.5e-08 60.5 80 53.8
BcaC05g29516 Brassica carinata HOM05D002160 ORTHO05D002012 8.5e-08 60.1 79 57.0
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 8.5e-08 60.1 77 57.1
TWI31G0178 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 8.5e-08 60.1 77 55.8
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 8.5e-08 60.1 78 59.0
PSO151G0128 Papaver somniferum HOM05D002160 ORTHO05D002012 1.1e-07 59.7 58 63.8
PSO339G1421 Papaver somniferum HOM05D002160 ORTHO05D002012 1.1e-07 59.7 58 63.8
PSO339G1859 Papaver somniferum HOM05D002160 ORTHO05D002012 1.1e-07 59.7 58 63.8
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 1.1e-07 59.7 78 57.7
COL.COLO4_14799 Corchorus olitorius HOM05D002160 ORTHO05D002012 1.5e-07 59.3 77 57.1
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 1.5e-07 59.3 78 57.7
TWI79G1473 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.5e-07 59.3 76 56.6
Carub.0003s0850 Capsella rubella HOM05D002160 ORTHO05D002012 1.9e-07 58.9 80 58.8
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 1.9e-07 58.9 83 56.6
AT5G02380 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 2.5e-07 58.5 76 55.3
Eucgr.J02054 Eucalyptus grandis HOM05D002160 ORTHO05D002012 2.5e-07 58.5 57 64.9
MD12G1141500 Malus domestica HOM05D002160 ORTHO05D002012 2.5e-07 58.5 76 53.9
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 2.5e-07 58.5 79 55.7
CSS0020810 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 3.2e-07 58.2 61 67.2
Actinidia05312 Actinidia chinensis HOM05D002160 ORTHO05D002012 5.5e-07 57.4 78 55.1
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 5.5e-07 57.4 77 53.2
Phvul.008G101800 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 5.5e-07 57.4 78 56.4
CSS0041171 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 7.2e-07 57.0 61 67.2
MD04G1128900 Malus domestica HOM05D002160 ORTHO05D002012 9.4e-07 56.6 82 54.9
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 1.2e-06 56.2 78 55.1
Os01g0149800 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 2.1e-06 55.5 80 61.2
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 2.7e-06 55.1 80 42.5
Nitab4.5_0006455g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 3.6e-06 54.7 81 55.6
Oeu053915.1 Olea europaea HOM05D022828 ORTHO05D002012 3.6e-06 54.7 53 67.9
CiPaw.14G068500 Carya illinoinensis HOM05D002160 ORTHO05D002012 4.7e-06 54.3 77 41.6
MBI14_g20106_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 4.7e-06 54.3 51 74.5
Thecc.05G039800 Theobroma cacao HOM05D002160 ORTHO05D002012 4.7e-06 54.3 83 53.0
Thhalv10015167m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 6.1e-06 53.9 80 41.2
CARHR211040 Cardamine hirsuta HOM05D002160 ORTHO05D002012 8.0e-06 53.5 77 53.2
Hma1.2p1_0418F.1_g149100 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 8.0e-06 53.5 79 54.4


User provided reference genes

Program Settings