Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400029919 Solanum tuberosum HOM05D003626 ORTHO05D004255 5.6e-256 887.1 450 100.0
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 1.8e-190 669.5 375 89.6
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 1.7e-151 540.0 417 69.5
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 4.0e-145 518.8 438 67.4
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 9.0e-137 491.1 437 64.8
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 2.6e-99 366.7 446 49.1
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 2.2e-98 363.6 447 50.1
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 2.8e-98 363.2 447 49.7
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 2.1e-93 347.1 445 48.8
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 6.1e-93 345.5 445 48.8
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 6.1e-93 345.5 444 49.3
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 1.8e-84 317.4 511 42.1
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 3.1e-44 183.7 450 35.6
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 8.9e-44 182.2 455 36.0
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 1.5e-43 181.4 449 35.6
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 2.0e-43 181.0 422 35.8
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 2.9e-42 177.2 340 40.6
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 4.6e-40 169.9 454 34.1
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 5.1e-39 166.4 391 36.8
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 6.6e-39 166.0 472 34.3
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 6.6e-39 166.0 457 35.4
CSS0005394 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 4.3e-38 163.3 442 33.3
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 4.0e-36 156.8 456 34.0
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 1.1e-33 148.7 467 32.8
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 1.6e-32 144.8 446 33.2
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 1.1e-30 138.7 422 33.6
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 1.9e-30 137.9 334 36.5
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 1.4e-28 131.7 430 31.6
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 3.1e-28 130.6 461 30.4
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 3.1e-28 130.6 445 34.6
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 4.0e-28 130.2 462 30.7
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 5.3e-28 129.8 454 30.8
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 6.9e-28 129.4 448 31.0
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 4.5e-27 126.7 419 30.1
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 5.8e-27 126.3 441 30.8
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 3.8e-26 123.6 461 32.3
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 3.8e-26 123.6 419 28.9
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 4.9e-26 123.2 464 31.2
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 6.4e-26 122.9 405 29.6
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 6.4e-26 122.9 454 31.3
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 8.4e-26 122.5 462 29.0
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 1.9e-25 121.3 457 29.1
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 5.4e-25 119.8 446 32.7
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 1.2e-24 118.6 461 28.9
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 4.6e-24 116.7 441 29.5
MBI17_g24687_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 1.0e-23 115.5 443 29.6
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 1.0e-23 115.5 428 27.6
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 1.3e-23 115.2 390 32.6
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 1.3e-23 115.2 457 31.5
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 1.3e-23 115.2 471 31.0
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.3e-23 115.2 453 29.8
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 6.7e-23 112.8 487 27.3
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 4.3e-22 110.2 460 30.9
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 5.6e-22 109.8 461 29.7
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 9.6e-22 109.0 455 31.4
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 9.6e-22 109.0 446 31.4
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 9.6e-22 109.0 466 29.0
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 1.3e-21 108.6 465 28.6
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 1.6e-21 108.2 442 30.8
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 2.8e-21 107.5 465 29.7
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 3.7e-21 107.1 436 28.9
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 3.7e-21 107.1 462 29.2
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 4.8e-21 106.7 466 29.6
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 8.1e-21 105.9 481 29.5
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 5.3e-20 103.2 447 30.0
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 6.9e-20 102.8 460 27.4
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 6.9e-20 102.8 462 28.4
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 1.2e-19 102.1 402 29.6
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 2.0e-19 101.3 384 29.4
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 2.0e-19 101.3 469 29.0
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 2.0e-19 101.3 448 28.3
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 3.4e-19 100.5 446 30.9
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 3.4e-19 100.5 331 31.1
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 4.5e-19 100.1 466 27.3
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 7.6e-19 99.4 454 30.2
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 7.6e-19 99.4 456 27.2
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 1.0e-18 99.0 458 28.2
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 1.7e-18 98.2 458 27.9
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 3.8e-18 97.1 458 28.6
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 3.8e-18 97.1 446 29.8
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 4.9e-18 96.7 448 29.7
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 6.5e-18 96.3 390 29.7
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 1.1e-17 95.5 440 26.8
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 1.4e-17 95.1 435 27.6
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 2.5e-17 94.4 436 30.0
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 4.2e-17 93.6 454 25.6
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 5.5e-17 93.2 465 28.8
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 5.5e-17 93.2 463 29.2
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 1.2e-16 92.0 450 28.7
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 2.7e-16 90.9 433 28.4
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 2.7e-16 90.9 454 28.9
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 4.6e-16 90.1 450 26.2
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 6.0e-16 89.7 470 27.2
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 6.0e-16 89.7 448 28.8
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 7.9e-16 89.4 368 31.0
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 1.3e-15 88.6 340 29.4
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 3.9e-15 87.0 361 26.9
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 3.9e-15 87.0 455 26.2
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 5.1e-15 86.7 457 26.0
MBI18_g29423_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 2.5e-14 84.3 493 27.8
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 2.5e-14 84.3 451 25.9
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 9.6e-14 82.4 463 27.2
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 1.6e-13 81.6 332 31.0
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 3.7e-13 80.5 449 24.9
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 6.2e-13 79.7 451 26.4
Lalb_Chr21g0305131 Lupinus albus HOM05D003626 ORTHO05D004255 6.9e-12 76.3 426 28.4
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 1.5e-11 75.1 365 26.3
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 5.8e-11 73.2 436 25.0
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 7.6e-11 72.8 372 26.3
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 1.3e-10 72.0 196 33.7
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 6.5e-10 69.7 443 26.4
Rhsim05G0045800 Rhododendron simsii HOM05D003626 ORTHO05D004255 1.4e-09 68.6 336 28.0
unitig_0.g459 Utricularia gibba HOM05D003626 ORTHO05D004255 5.5e-09 66.6 373 24.9
Oeu035062.1 Olea europaea HOM05D003626 ORTHO05D004255 7.1e-09 66.2 182 33.0
TAR375G0736 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.7e-08 64.3 108 38.0
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 8.7e-07 59.3 363 25.3
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 1.1e-06 58.9 444 26.1
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 1.5e-06 58.5 328 28.4
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 1.9e-06 58.2 303 23.8
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 1.9e-06 58.2 343 25.1
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 3.3e-06 57.4 363 23.7
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 7.4e-06 56.2 293 25.3
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 9.7e-06 55.8 295 26.4


User provided reference genes

Program Settings