Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 4.3e-78 294.7 155 100.0
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 8.6e-63 243.8 128 99.2
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 8.6e-63 243.8 128 99.2
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 1.6e-61 239.6 128 96.9
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.8e-61 238.8 129 96.9
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 1.2e-56 223.4 128 87.5
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 1.6e-56 223.0 128 86.7
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 2.7e-56 222.2 126 87.3
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 2.7e-56 222.2 126 88.1
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 3.5e-56 221.9 126 85.7
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 4.6e-56 221.5 126 87.3
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 4.6e-56 221.5 126 87.3
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 4.6e-56 221.5 127 85.0
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 6.0e-56 221.1 130 86.9
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 6.0e-56 221.1 126 87.3
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 6.0e-56 221.1 126 87.3
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 6.0e-56 221.1 125 88.0
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 7.8e-56 220.7 128 85.9
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 1.0e-55 220.3 126 86.5
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.3e-55 219.9 126 84.9
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.3e-55 219.9 128 85.9
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 1.3e-55 219.9 128 84.4
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.7e-55 219.5 122 89.3
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 2.3e-55 219.2 128 83.6
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.3e-55 219.2 125 87.2
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.3e-55 219.2 125 87.2
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 3.0e-55 218.8 128 83.6
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 3.0e-55 218.8 128 84.4
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 3.9e-55 218.4 122 88.5
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 5.1e-55 218.0 125 86.4
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 5.1e-55 218.0 128 84.4
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 5.1e-55 218.0 125 88.0
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 6.6e-55 217.6 128 82.0
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 6.6e-55 217.6 126 84.1
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 6.6e-55 217.6 122 87.7
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 6.6e-55 217.6 128 83.6
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 6.6e-55 217.6 128 82.8
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.6e-55 217.6 128 84.4
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 6.6e-55 217.6 126 84.1
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 6.6e-55 217.6 129 83.7
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 8.6e-55 217.2 128 84.4
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 1.1e-54 216.9 128 84.4
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.1e-54 216.9 128 83.6
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 1.1e-54 216.9 126 85.7
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 1.5e-54 216.5 128 83.6
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 1.5e-54 216.5 126 82.5
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.5e-54 216.5 128 85.2
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 1.9e-54 216.1 128 83.6
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 1.9e-54 216.1 128 82.8
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 1.9e-54 216.1 128 82.0
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 1.9e-54 216.1 144 75.7
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 2.5e-54 215.7 128 83.6
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 4.3e-54 214.9 129 86.0
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 5.6e-54 214.5 128 83.6
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 5.6e-54 214.5 126 80.2
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 7.3e-54 214.2 128 81.2
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 9.5e-54 213.8 128 82.8
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 9.5e-54 213.8 128 81.2
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.2e-53 213.4 123 87.0
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 1.6e-53 213.0 123 83.7
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.6e-53 213.0 127 82.7
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 2.1e-53 212.6 123 84.6
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 4.7e-53 211.5 128 80.5
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 8.1e-53 210.7 122 83.6
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 1.1e-52 210.3 122 84.4
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 2.4e-52 209.1 125 83.2
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 2.4e-52 209.1 123 83.7
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 3.1e-52 208.8 124 85.5
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 3.1e-52 208.8 126 81.7
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 5.2e-52 208.0 127 81.1
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 6.8e-52 207.6 128 81.2
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 6.8e-52 207.6 128 82.0
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 8.9e-52 207.2 128 80.5
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 8.9e-52 207.2 127 81.1
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 1.2e-51 206.8 142 74.6
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.5e-51 206.5 128 81.2
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.6e-51 205.7 122 85.2
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.6e-51 205.7 122 85.2
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 4.4e-51 204.9 128 81.2
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 4.4e-51 204.9 128 81.2
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 5.8e-51 204.5 128 81.2
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 5.8e-51 204.5 128 81.2
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 5.8e-51 204.5 124 83.1
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 5.8e-51 204.5 124 82.3
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 7.6e-51 204.1 124 83.1
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 9.9e-51 203.8 124 83.1
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 1.3e-50 203.4 127 78.7
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.7e-50 203.0 127 81.9
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 3.8e-50 201.8 122 77.0
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 4.9e-50 201.4 124 79.8
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 8.4e-50 200.7 124 79.8
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 1.9e-49 199.5 128 78.1
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.4e-49 199.1 126 78.6
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.4e-49 199.1 126 78.6
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.4e-49 199.1 122 80.3
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 4.2e-49 198.4 129 80.6
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 4.2e-49 198.4 128 79.7
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 5.4e-49 198.0 134 77.6
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 7.1e-49 197.6 129 80.6
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 9.2e-49 197.2 116 83.6
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 9.2e-49 197.2 121 80.2
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 1.2e-48 196.8 134 76.9
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 2.1e-48 196.1 124 77.4
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 2.1e-48 196.1 124 77.4
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 2.7e-48 195.7 128 78.9
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.7e-48 195.7 128 78.9
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 3.5e-48 195.3 123 81.3
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 6.0e-48 194.5 128 78.1
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 6.0e-48 194.5 128 78.1
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 1.0e-47 193.7 124 77.4
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 1.0e-47 193.7 128 78.9
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 1.3e-47 193.4 107 94.4
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 1.7e-47 193.0 128 75.8
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 1.7e-47 193.0 124 76.6
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 3.0e-47 192.2 128 77.3
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 3.0e-47 192.2 129 78.3
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 5.1e-47 191.4 129 78.3
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 5.1e-47 191.4 123 79.7
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 6.6e-47 191.0 123 74.0
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 1.1e-46 190.3 121 78.5
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 1.5e-46 189.9 123 78.0
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 7.3e-46 187.6 124 75.8
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 1.6e-45 186.4 120 77.5
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 2.8e-45 185.7 122 77.0
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 1.5e-43 179.9 110 83.6
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 4.4e-43 178.3 107 81.3
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 1.7e-42 176.4 96 90.6
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 8.7e-39 164.1 106 81.1
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 9.6e-38 160.6 96 79.2
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 1.4e-36 156.8 121 66.1
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.8e-36 156.4 122 69.7
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 4.0e-36 155.2 123 64.2
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 1.9e-33 146.4 123 61.0
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 3.2e-33 145.6 85 83.5
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 3.2e-33 145.6 113 61.1
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 4.3e-30 135.2 83 80.7
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 2.0e-27 126.3 122 54.1
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 4.9e-26 121.7 123 53.7
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.5e-25 119.4 70 81.4
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 2.3e-23 112.8 67 77.6
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 3.0e-23 112.5 68 79.4
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 4.3e-22 108.6 60 83.3
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 2.1e-16 89.7 53 81.1
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 1.0e-15 87.4 69 66.7
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 5.7e-14 81.6 124 38.7
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 3.4e-11 72.4 116 36.2
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 5.9e-11 71.6 62 59.7
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 1.7e-10 70.1 57 64.9
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 8.5e-10 67.8 40 82.5
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.6e-08 63.5 32 100.0


User provided reference genes

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