Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 1.0e-160 570.1 306 100.0
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 2.8e-158 562.0 306 98.7
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 2.8e-158 562.0 306 98.7
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 7.2e-154 547.4 303 95.4
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 1.5e-151 539.7 306 95.1
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 6.3e-150 534.3 303 94.1
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 1.8e-136 489.6 308 85.1
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 1.4e-133 479.9 308 83.1
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 2.9e-131 472.2 310 80.3
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 3.8e-131 471.9 306 81.4
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 6.6e-131 471.1 306 80.1
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 4.2e-130 468.4 306 81.0
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 7.2e-130 467.6 310 81.6
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 7.2e-130 467.6 323 80.2
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 1.2e-129 466.8 351 73.8
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 1.2e-129 466.8 306 82.0
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 4.7e-129 464.9 306 84.6
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 1.0e-128 463.8 306 83.7
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 3.0e-128 462.2 305 80.3
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 5.2e-128 461.5 306 84.0
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 5.2e-128 461.5 306 79.1
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 6.8e-128 461.1 306 79.4
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 1.5e-127 459.9 307 79.2
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 2.0e-127 459.5 314 78.7
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 4.4e-127 458.4 304 83.6
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 5.7e-127 458.0 306 80.4
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 5.7e-127 458.0 306 78.8
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 5.7e-127 458.0 306 78.8
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 7.5e-127 457.6 314 78.7
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 7.5e-127 457.6 307 78.8
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 1.7e-126 456.4 306 78.4
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 1.7e-126 456.4 306 79.7
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 2.8e-126 455.7 306 79.4
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 1.8e-125 453.0 306 78.1
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 7.0e-125 451.1 306 77.5
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 7.0e-125 451.1 306 77.1
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 1.2e-124 450.3 307 77.9
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 1.2e-124 450.3 306 78.1
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 2.7e-124 449.1 306 77.8
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 3.5e-124 448.7 300 79.3
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 1.7e-123 446.4 301 78.7
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 2.3e-123 446.0 306 78.8
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 2.9e-123 445.7 306 76.5
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 2.9e-123 445.7 306 77.1
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 6.6e-123 444.5 290 80.3
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 6.6e-123 444.5 290 80.3
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 1.5e-122 443.4 306 76.8
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 1.9e-122 443.0 306 76.8
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 3.3e-122 442.2 307 77.2
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 4.7e-121 438.3 306 75.2
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 2.3e-120 436.0 306 75.2
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 6.8e-120 434.5 306 74.8
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 1.2e-119 433.7 287 78.0
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 7.5e-119 431.0 265 84.2
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.7e-118 429.9 266 83.8
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 2.2e-118 429.5 306 74.2
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 2.9e-118 429.1 285 79.3
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.7e-118 428.7 265 83.8
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 8.3e-118 427.6 267 83.1
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 1.4e-117 426.8 282 78.7
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 1.4e-117 426.8 283 77.7
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 3.2e-117 425.6 306 73.5
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 2.7e-116 422.5 307 73.3
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 6.0e-116 421.4 283 77.0
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 7.8e-116 421.0 305 72.5
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 1.0e-115 420.6 306 71.9
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 2.3e-115 419.5 282 77.7
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 3.9e-115 418.7 282 77.7
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 3.9e-115 418.7 293 75.1
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 1.1e-114 417.2 295 73.6
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 1.1e-114 417.2 295 73.6
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 1.1e-114 417.2 306 72.9
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 1.5e-114 416.8 295 73.6
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 1.5e-114 416.8 307 74.3
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 1.9e-114 416.4 280 77.9
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 1.9e-114 416.4 306 72.2
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 2.5e-114 416.0 290 74.8
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 3.3e-114 415.6 305 71.8
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 4.3e-114 415.2 305 71.1
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 5.6e-114 414.8 295 73.6
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 7.3e-114 414.5 294 73.5
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 7.3e-114 414.5 305 72.1
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 9.5e-114 414.1 305 71.8
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 9.5e-114 414.1 266 82.7
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 1.2e-113 413.7 305 71.5
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 1.6e-113 413.3 290 74.8
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 2.8e-113 412.5 305 71.1
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 2.8e-113 412.5 283 75.6
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 2.8e-113 412.5 276 76.8
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 3.6e-113 412.1 294 73.1
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 1.4e-112 410.2 286 74.8
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 1.4e-112 410.2 300 73.3
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 1.8e-112 409.8 286 73.8
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 2.3e-112 409.5 306 71.6
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 2.3e-112 409.5 323 69.0
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 5.2e-112 408.3 305 70.5
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 6.8e-112 407.9 324 67.3
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 8.9e-112 407.5 295 72.9
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 1.2e-111 407.1 283 75.3
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.2e-111 407.1 283 75.3
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 1.5e-111 406.8 324 67.6
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 1.5e-111 406.8 276 76.1
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 2.0e-111 406.4 305 70.8
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 2.6e-111 406.0 306 70.6
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 3.4e-111 405.6 278 74.5
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 9.8e-111 404.1 283 74.9
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 1.3e-110 403.7 272 76.5
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 2.2e-110 402.9 299 71.6
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.9e-110 402.5 284 77.1
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 4.9e-110 401.7 283 73.1
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 8.3e-110 401.0 278 73.4
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 1.9e-109 399.8 283 72.8
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 7.8e-108 394.4 275 74.2
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 2.3e-107 392.9 280 71.4
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 6.6e-107 391.3 306 67.6
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.6e-105 385.6 265 78.9
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 6.2e-105 384.8 278 70.1
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 8.9e-104 380.9 276 71.0
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 1.2e-103 380.6 315 64.4
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 3.4e-103 379.0 264 75.8
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.2e-102 376.3 233 82.0
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 4.9e-102 375.2 281 68.7
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 8.3e-102 374.4 291 70.1
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 1.1e-101 374.0 292 65.4
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 3.2e-101 372.5 289 67.8
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 2.1e-100 369.8 352 59.1
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 2.8e-97 359.4 278 66.2
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 2.6e-95 352.8 280 64.6
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 4.2e-93 345.5 212 84.4
DCAR_027531 Daucus carota HOM05D004217 ORTHO05D005561 7.6e-87 324.7 285 65.6
AagrBONN_evm.TU.Sc2ySwM_362.1682 Anthoceros agrestis HOM05D004217 ORTHO05D005561 3.8e-86 322.4 287 58.2
Zm00001eb178240 Zea mays HOM05D004217 ORTHO05D005561 1.4e-80 303.9 307 57.0
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 4.9e-78 295.4 224 70.1
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 6.4e-78 295.0 267 62.2
SEGI_06876 Sequoiadendron giganteum HOM05D004217 ORTHO05D005561 1.8e-72 276.9 274 52.2
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 2.4e-72 276.6 203 69.5
SHI05064 Sapria himalayana HOM05D004217 ORTHO05D005561 2.6e-71 273.1 198 68.2
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 1.0e-70 271.2 163 84.0
Os08g0240600 Oryza sativa ssp. japonica HOM05D004217 ORTHO05D005561 1.4e-69 267.3 252 59.5
Mapoly0239s0006 Marchantia polymorpha HOM05D004217 ORTHO05D005561 3.2e-69 266.2 276 54.3
Dinv08497 Davidia involucrata HOM05D004217 ORTHO05D005561 5.3e-64 248.8 205 69.3
CBR_g38257 Chara braunii HOM05D004217 ORTHO05D005561 3.5e-60 236.1 265 46.8
Actinidia32317 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.1e-58 231.1 163 74.2
A04p31520 Brassica napus HOM05D004217 ORTHO05D005561 7.0e-40 168.7 184 53.3
BraA04t18609Z Brassica rapa HOM05D004217 ORTHO05D005561 7.0e-40 168.7 184 53.3
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 9.1e-40 168.3 169 58.6
C04p68950 Brassica napus HOM05D004217 ORTHO05D005561 9.4e-37 158.3 107 71.0
BolC4t28396H Brassica oleracea HOM05D004217 ORTHO05D005561 9.4e-37 158.3 107 71.0
Peaxi162Scf01233g00007 Petunia axillaris HOM05D004217 ORTHO05D005561 7.4e-34 148.7 96 82.3
Sabra16G0048200 Salix brachista HOM05D000002 ORTHO05D000047 9.7e-34 148.3 151 57.6
BcaC02g12897 Brassica carinata HOM05D004217 ORTHO05D005561 3.5e-31 139.8 96 71.9
SHI39628 Sapria himalayana HOM05D004217 ORTHO05D005561 2.9e-30 136.7 81 82.7
MBI15_g39623_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D016559 9.1e-24 115.2 102 63.7
MD12G1067200 Malus domestica HOM05D004217 ORTHO05D005561 2.7e-20 103.6 82 63.4
Aqoxy5G00134 Aquilegia oxysepala HOM05D004217 ORTHO05D016559 1.5e-18 97.8 86 65.1
AT2G21980 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 7.0e-16 89.0 58 77.6
FAN17G2754 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.7e-14 84.3 52 84.6
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 1.1e-13 81.6 77 54.5
arahy.Tifrunner.gnm1.ann1.XNH8SK Arachis hypogaea HOM05D004217 ORTHO05D016559 1.5e-13 81.3 77 51.9
AL7G43680 Arabidopsis lyrata HOM05D004217 ORTHO05D026831 9.5e-13 78.6 68 58.8
FAN22G2236 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.6e-12 77.8 70 67.1
AL7G51080 Arabidopsis lyrata HOM05D004217 ORTHO05D080694 3.6e-12 76.6 68 58.8
AL4G11300 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 2.3e-11 73.9 59 57.6
arahy.Tifrunner.gnm1.ann1.5F2ED3 Arachis hypogaea HOM05D004217 ORTHO05D016559 3.0e-11 73.6 77 51.9
arahy.Tifrunner.gnm1.ann1.CY1WZS Arachis hypogaea HOM05D004217 ORTHO05D016559 3.0e-11 73.6 82 46.3
arahy.Tifrunner.gnm1.ann1.2C13MW Arachis hypogaea HOM05D004217 ORTHO05D016559 1.2e-10 71.6 85 44.7
BcaB04g18853 Brassica carinata HOM05D004217 ORTHO05D094331 1.4e-08 64.7 44 70.5
ATR0564G208 Amborella trichopoda HOM05D004217 ORTHO05D064567 5.4e-08 62.8 122 34.4
BcaB06g29630 Brassica carinata HOM05D004217 ORTHO05D095231 7.0e-08 62.4 43 69.8
BcaB06g29631 Brassica carinata HOM05D002050 ORTHO05D001949 7.0e-08 62.4 43 69.8


User provided reference genes

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