Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 2.3e-69 265.4 131 100.0
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 7.0e-66 253.8 131 95.4
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 9.2e-66 253.4 131 95.4
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 5.6e-63 244.2 131 90.8
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 2.6e-60 235.3 126 89.7
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.7e-57 225.3 126 86.5
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 1.1e-55 219.9 128 80.5
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 4.3e-55 218.0 124 83.1
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 4.3e-55 218.0 127 83.5
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 9.5e-55 216.9 127 81.1
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 1.2e-54 216.5 126 82.5
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 1.2e-54 216.5 126 82.5
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 3.6e-54 214.9 119 89.1
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 3.6e-54 214.9 125 80.0
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 3.6e-54 214.9 127 79.5
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 4.7e-54 214.5 129 81.4
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 2.3e-53 212.2 123 79.7
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 4.0e-53 211.5 126 78.6
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 5.2e-53 211.1 126 81.0
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 5.2e-53 211.1 120 83.3
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 6.8e-53 210.7 129 79.1
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 6.8e-53 210.7 125 76.0
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 8.9e-53 210.3 123 82.9
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 1.2e-52 209.9 125 78.4
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 1.5e-52 209.5 129 79.1
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 2.0e-52 209.1 128 76.6
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 2.6e-52 208.8 123 82.9
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 2.6e-52 208.8 129 77.5
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 4.4e-52 208.0 130 73.8
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 4.4e-52 208.0 126 80.2
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 9.9e-52 206.8 131 74.8
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 1.7e-51 206.1 127 76.4
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 1.7e-51 206.1 126 77.0
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 2.9e-51 205.3 121 78.5
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 3.7e-51 204.9 127 76.4
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 4.9e-51 204.5 119 81.5
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 6.4e-51 204.1 126 77.8
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 1.1e-50 203.4 127 78.7
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 1.1e-50 203.4 118 80.5
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.4e-50 203.0 129 75.2
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 1.9e-50 202.6 120 80.8
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 1.9e-50 202.6 130 76.9
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 2.4e-50 202.2 123 78.0
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.2e-50 201.8 129 76.7
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 4.1e-50 201.4 124 77.4
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 4.1e-50 201.4 129 74.4
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 5.4e-50 201.1 121 79.3
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 7.1e-50 200.7 121 79.3
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 9.2e-50 200.3 126 77.0
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 1.2e-49 199.9 123 79.7
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 1.2e-49 199.9 126 77.0
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.2e-49 199.9 126 77.0
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.2e-49 199.9 129 76.0
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.2e-49 199.9 129 76.0
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 1.6e-49 199.5 120 78.3
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.1e-49 199.1 137 71.5
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 3.5e-49 198.4 126 76.2
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 6.0e-49 197.6 129 73.6
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.0e-48 196.8 119 79.8
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.0e-48 196.8 126 76.2
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.7e-48 196.1 120 79.2
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 2.3e-48 195.7 120 80.8
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 2.3e-48 195.7 127 74.8
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 3.9e-48 194.9 131 73.3
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 6.6e-48 194.1 120 80.8
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.1e-47 193.4 121 76.9
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 3.3e-47 191.8 125 73.6
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 4.3e-47 191.4 119 76.5
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 5.6e-47 191.0 122 75.4
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 9.6e-47 190.3 122 73.8
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 1.2e-46 189.9 124 76.6
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 2.1e-46 189.1 120 75.8
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 4.7e-46 188.0 119 75.6
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 1.1e-45 186.8 119 73.1
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 1.8e-45 186.0 120 75.0
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 2.4e-45 185.7 126 69.0
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 3.1e-45 185.3 118 72.0
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 4.0e-45 184.9 122 68.9
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 6.8e-45 184.1 119 73.1
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 8.9e-45 183.7 122 71.3
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 1.2e-44 183.3 119 73.1
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 1.2e-44 183.3 122 74.6
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 2.0e-44 182.6 119 74.8
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 2.0e-44 182.6 119 73.9
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 3.4e-44 181.8 129 72.9
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 3.4e-44 181.8 120 72.5
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 3.4e-44 181.8 119 73.9
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 7.6e-44 180.6 109 82.6
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.2e-43 179.1 120 70.0
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 3.8e-43 178.3 101 80.2
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 6.4e-43 177.6 122 66.4
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 1.1e-42 176.8 109 76.1
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.9e-42 176.0 123 65.0
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 2.4e-42 175.6 124 65.3
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.2e-41 173.3 123 65.9
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.2e-41 173.3 122 68.9
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 1.6e-41 172.9 124 64.5
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 2.1e-41 172.6 119 68.9
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 3.5e-41 171.8 118 68.6
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 6.0e-41 171.0 119 72.3
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 1.0e-40 170.2 121 64.5
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 1.0e-40 170.2 119 68.9
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 1.0e-40 170.2 126 64.3
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.3e-40 169.9 110 75.5
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.7e-40 169.5 121 66.1
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 2.3e-40 169.1 118 67.8
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.0e-40 168.7 107 75.7
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 3.9e-40 168.3 124 62.1
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 3.9e-40 168.3 122 64.8
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 5.1e-40 167.9 119 69.7
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 5.1e-40 167.9 119 68.1
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 5.1e-40 167.9 121 62.0
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 1.1e-39 166.8 119 67.2
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.5e-39 166.4 127 62.2
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 2.5e-39 165.6 126 67.5
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 2.5e-39 165.6 119 66.4
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 4.3e-39 164.9 109 72.5
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 9.6e-39 163.7 125 63.2
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 1.3e-38 163.3 121 66.1
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 1.6e-38 162.9 124 63.7
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 2.1e-38 162.5 108 66.7
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 4.8e-38 161.4 127 59.8
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 4.8e-38 161.4 121 65.3
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 4.8e-38 161.4 124 62.1
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 8.1e-38 160.6 120 62.5
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 8.1e-38 160.6 118 64.4
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 1.1e-37 160.2 123 64.2
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 5.3e-37 157.9 121 62.8
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 5.3e-37 157.9 119 62.2
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 6.9e-37 157.5 120 63.3
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 1.2e-36 156.8 123 61.0
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 1.2e-36 156.8 123 61.0
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 1.2e-36 156.8 123 61.0
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 4.4e-36 154.8 119 62.2
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 9.9e-36 153.7 123 61.8
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 2.2e-35 152.5 116 61.2
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 2.9e-35 152.1 129 60.5
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 1.4e-34 149.8 118 61.9
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 1.4e-34 149.8 118 61.9
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 1.9e-34 149.4 118 62.7
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.9e-34 149.4 120 58.3
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 1.9e-34 149.4 118 57.6
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 4.2e-34 148.3 120 60.0
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 5.4e-34 147.9 122 59.0
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 7.1e-34 147.5 120 60.8
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 7.1e-34 147.5 120 60.0
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 9.3e-34 147.1 118 61.9
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 1.6e-33 146.4 120 64.2
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 3.5e-33 145.2 118 61.0
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 3.5e-33 145.2 118 61.0
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 3.5e-33 145.2 120 59.2
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 4.6e-33 144.8 122 58.2
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 6.0e-33 144.4 118 56.8
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 7.9e-33 144.1 99 69.7
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 9.6e-31 137.1 119 58.8
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 6.9e-29 131.0 119 52.1
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.5e-28 129.8 116 56.0
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 7.1e-26 120.9 79 72.2
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 2.7e-25 119.0 63 85.7
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.3e-22 110.2 59 84.7
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.1e-22 109.4 82 75.6
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 4.0e-21 105.1 65 76.9
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.5e-20 103.2 61 80.3
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.5e-20 103.2 61 80.3
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 2.5e-18 95.9 64 76.6
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 2.5e-18 95.9 53 75.5
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 2.1e-17 92.8 61 78.7
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 2.1e-17 92.8 62 75.8
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 2.7e-17 92.4 112 42.0
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.9e-15 86.3 53 75.5
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 3.3e-15 85.5 64 67.2
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 5.7e-15 84.7 62 58.1
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 8.2e-14 80.9 51 78.4
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 2.4e-13 79.3 59 62.7
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 2.4e-13 79.3 121 37.2
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.2e-11 72.8 67 55.2
Nitab4.5_0006280g0090 Nicotiana tabacum HOM05D003887 ORTHO05D048295 5.1e-08 61.6 38 78.9
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.1e-07 60.5 64 45.3


User provided reference genes

Program Settings