Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400029820 Solanum tuberosum HOM05D003074 ORTHO05D002434 2.9e-51 204.9 102 100.0
PGSC0003DMG400032292 Solanum tuberosum HOM05D003074 ORTHO05D002434 7.7e-44 180.3 102 90.2
PGSC0003DMG400031876 Solanum tuberosum HOM05D003074 ORTHO05D002434 1.7e-43 179.1 102 90.2
PGSC0003DMG400001089 Solanum tuberosum HOM05D003074 ORTHO05D002434 6.1e-25 117.5 118 57.6
Nitab4.5_0009995g0010 Nicotiana tabacum HOM05D003074 ORTHO05D002434 3.4e-23 111.7 96 65.6
Peaxi162Scf01097g00039 Petunia axillaris HOM05D003074 ORTHO05D002434 1.3e-22 109.8 109 59.6
TAR626G1667 Trochodendron aralioides HOM05D003074 ORTHO05D002434 3.5e-20 101.7 126 50.0
Oeu007582.1 Olea europaea HOM05D003074 ORTHO05D002434 3.8e-19 98.2 113 49.6
TAR624G1270 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.9e-18 95.9 119 50.4
Haze_09674 Corylus avellana HOM05D003074 ORTHO05D002434 3.6e-17 91.7 120 46.7
Medtr3g051510 Medicago truncatula HOM05D003074 ORTHO05D002434 4.7e-17 91.3 106 48.1
RhsimUnG0250800 Rhododendron simsii HOM05D003074 ORTHO05D002434 8.0e-17 90.5 64 70.3
Cfa020350 Carpinus fangiana HOM05D003074 ORTHO05D002434 1.4e-16 89.7 118 45.8
TWI38G1886 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 1.4e-16 89.7 117 43.6
CiPaw.12G129500 Carya illinoinensis HOM05D003074 ORTHO05D002434 1.8e-16 89.4 64 70.3
Hma1.2p1_1222F.1_g268140 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 4.0e-16 88.2 123 47.2
Thecc.07G037400 Theobroma cacao HOM05D003074 ORTHO05D002434 4.0e-16 88.2 82 56.1
Aqoxy1G02174 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 8.9e-16 87.0 123 45.5
Hma1.2p1_0673F.1_g201330 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 8.9e-16 87.0 123 46.3
Dinv22264 Davidia involucrata HOM05D003074 ORTHO05D002434 1.2e-15 86.7 56 73.2
Dinv40751 Davidia involucrata HOM05D003074 ORTHO05D002434 1.5e-15 86.3 124 46.8
QL08p010341 Quercus lobata HOM05D003074 ORTHO05D002434 1.5e-15 86.3 124 46.0
Ciclev10009680m.g Citrus clementina HOM05D003074 ORTHO05D002434 2.0e-15 85.9 126 46.0
Duzib213G0915 Durio zibethinus HOM05D003074 ORTHO05D002434 3.4e-15 85.1 79 55.7
Gorai.002G088300 Gossypium raimondii HOM05D003074 ORTHO05D002434 4.4e-15 84.7 109 46.8
Medtr3g051530 Medicago truncatula HOM05D003074 ORTHO05D002434 5.8e-15 84.3 106 47.2
Hma1.2p1_1091F.1_g255850 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 7.5e-15 84.0 63 69.8
Oeu042936.1 Olea europaea HOM05D003074 ORTHO05D002434 9.8e-15 83.6 110 44.5
COL.COLO4_09658 Corchorus olitorius HOM05D003074 ORTHO05D002434 2.2e-14 82.4 87 54.0
Hma1.2p1_1162F.1_g262580 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 2.2e-14 82.4 63 68.3
Lsat_1_v5_gn_9_93960 Lactuca sativa HOM05D003074 ORTHO05D002434 2.2e-14 82.4 57 68.4
MBI02_g07159_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 4.9e-14 81.3 112 42.9
Ca_01715_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 6.4e-14 80.9 103 46.6
Ca_30684_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 6.4e-14 80.9 103 46.6
Gohir.A01G079300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 6.4e-14 80.9 109 45.0
Atru.chr2.3399 Acer truncatum HOM05D003074 ORTHO05D002434 8.3e-14 80.5 78 55.1
CiPaw.11G189000 Carya illinoinensis HOM05D003074 ORTHO05D002434 1.1e-13 80.1 91 48.4
Manes.03G129100 Manihot esculenta HOM05D003074 ORTHO05D002434 1.1e-13 80.1 123 43.9
Actinidia35342 Actinidia chinensis HOM05D003074 ORTHO05D002434 1.4e-13 79.7 57 66.7
Cfa000232 Carpinus fangiana HOM05D003074 ORTHO05D002434 1.4e-13 79.7 127 40.2
Medtr3g051570 Medicago truncatula HOM05D003074 ORTHO05D002434 1.4e-13 79.7 102 44.1
EL10Ac4g07810 Beta vulgaris HOM05D003074 ORTHO05D002434 1.8e-13 79.3 109 45.9
CDE05G1751 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 1.8e-13 79.3 80 48.8
PSO541G1700 Papaver somniferum HOM05D003074 ORTHO05D002434 1.8e-13 79.3 80 55.0
PSO675G3145 Papaver somniferum HOM05D003074 ORTHO05D002434 1.8e-13 79.3 80 55.0
Sed0026688 Sechium edule HOM05D003074 ORTHO05D002434 1.8e-13 79.3 111 45.0
CiPaw.09G091000 Carya illinoinensis HOM05D003074 ORTHO05D002434 2.4e-13 79.0 132 40.9
ECA240G4169 Erigeron canadensis HOM05D003074 ORTHO05D002434 2.4e-13 79.0 69 58.0
Medtr3g051610 Medicago truncatula HOM05D003074 ORTHO05D002434 2.4e-13 79.0 106 43.4
Glyma.08G316000 Glycine max HOM05D003074 ORTHO05D002434 3.2e-13 78.6 107 45.8
Glyma.18G096700 Glycine max HOM05D003074 ORTHO05D002434 3.2e-13 78.6 103 45.6
Gohir.D05G369300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 3.2e-13 78.6 65 64.6
Gorai.009G438000 Gossypium raimondii HOM05D003074 ORTHO05D002434 3.2e-13 78.6 65 64.6
Atru.chr2.3400 Acer truncatum HOM05D003074 ORTHO05D002434 4.1e-13 78.2 56 69.6
Haze_06793 Corylus avellana HOM05D003074 ORTHO05D002434 4.1e-13 78.2 64 60.9
PGR031G1144 Punica granatum HOM05D003074 ORTHO05D002434 5.4e-13 77.8 110 44.5
TPR.G16595 Trifolium pratense HOM05D003074 ORTHO05D002434 5.4e-13 77.8 107 45.8
Gohir.D01G066350 Gossypium hirsutum HOM05D003074 ORTHO05D002434 7.0e-13 77.4 77 51.9
Gohir.A04G016900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.2e-12 76.6 65 63.1
Sed0007461 Sechium edule HOM05D003074 ORTHO05D002434 1.6e-12 76.3 112 42.0
Phvul.006G043100 Phaseolus vulgaris HOM05D003074 ORTHO05D002434 2.0e-12 75.9 99 43.4
Cpa.g.sc97.7 Carica papaya HOM05D003074 ORTHO05D002434 2.7e-12 75.5 114 43.0
Cc09_g09730 Coffea canephora HOM05D003074 ORTHO05D002434 2.7e-12 75.5 130 41.5
Nn1g03544 Nelumbo nucifera HOM05D003074 ORTHO05D002434 2.7e-12 75.5 107 43.0
Migut.M01767 Erythranthe guttata HOM05D003074 ORTHO05D002434 3.5e-12 75.1 55 65.5
TAR624G0488 Trochodendron aralioides HOM05D003074 ORTHO05D002434 3.5e-12 75.1 97 42.3
Lj6g0015217 Lotus japonicus HOM05D003074 ORTHO05D002434 4.6e-12 74.7 103 46.6
MBI02_g07158_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 4.6e-12 74.7 78 55.1
Aqoxy1G02178 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 6.0e-12 74.3 113 40.7
MSTRG.6917 Avicennia marina HOM05D003074 ORTHO05D002434 6.0e-12 74.3 72 51.4
CSS0019776 Camellia sinensis var. sinensis HOM05D003074 ORTHO05D002434 6.0e-12 74.3 110 41.8
Duzib268G1655 Durio zibethinus HOM05D003074 ORTHO05D002434 6.0e-12 74.3 62 59.7
ATR0752G060 Amborella trichopoda HOM05D003074 ORTHO05D002434 7.8e-12 73.9 113 41.6
CDE05G3459 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 7.8e-12 73.9 58 55.2
Duzib235G0239 Durio zibethinus HOM05D003074 ORTHO05D002434 7.8e-12 73.9 116 44.0
MD11G1218800 Malus domestica HOM05D003074 ORTHO05D002434 7.8e-12 73.9 59 64.4
Manes.16G007700 Manihot esculenta HOM05D003074 ORTHO05D002434 7.8e-12 73.9 80 50.0
Nitab4.5_0000653g0010 Nicotiana tabacum HOM05D003074 ORTHO05D002434 7.8e-12 73.9 93 51.6
ClCG05G014310 Citrullus lanatus HOM05D003074 ORTHO05D002434 1.0e-11 73.6 65 63.1
ECA246G0494 Erigeron canadensis HOM05D003074 ORTHO05D002434 1.0e-11 73.6 109 40.4
Atru.chr10.2213 Acer truncatum HOM05D003074 ORTHO05D002434 1.3e-11 73.2 70 57.1
Nn5g29371 Nelumbo nucifera HOM05D003074 ORTHO05D002434 1.3e-11 73.2 74 55.4
Potri.004G015900 Populus trichocarpa HOM05D003074 ORTHO05D002434 1.3e-11 73.2 67 52.2
Prupe.4G212400 Prunus persica HOM05D003074 ORTHO05D002434 1.3e-11 73.2 58 62.1
Ah.04g165880 Amaranthus hybridus HOM05D003074 ORTHO05D002434 1.7e-11 72.8 114 41.2
EL10Ac4g07811 Beta vulgaris HOM05D003074 ORTHO05D002434 3.0e-11 72.0 112 43.8
MBI18_g22612_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 3.0e-11 72.0 56 58.9
CDE02G3016 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 3.9e-11 71.6 62 58.1
Lalb_Chr15g0081141 Lupinus albus HOM05D003074 ORTHO05D002434 3.9e-11 71.6 60 60.0
Sabra16G0289700 Salix brachista HOM05D003074 ORTHO05D002434 5.0e-11 71.2 112 44.6
LjContig00272g0022666 Lotus japonicus HOM05D003074 ORTHO05D002434 6.6e-11 70.9 102 42.2
Rhsim13G0146000 Rhododendron simsii HOM05D002761 ORTHO05D003351 6.6e-11 70.9 80 50.0
RhsimUnG0109700 Rhododendron simsii HOM05D003074 ORTHO05D002434 6.6e-11 70.9 80 50.0
Sabra11G0125300 Salix brachista HOM05D003074 ORTHO05D002434 6.6e-11 70.9 92 46.7
AUR62015772 Chenopodium quinoa HOM05D003074 ORTHO05D002434 8.6e-11 70.5 108 42.6
MBI02_g40709_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 8.6e-11 70.5 79 50.6
TAR627G0593 Trochodendron aralioides HOM05D003074 ORTHO05D002434 8.6e-11 70.5 56 60.7
Phvul.008G267000 Phaseolus vulgaris HOM05D003074 ORTHO05D002434 1.1e-10 70.1 99 42.4
THA.LOC104817856 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 1.1e-10 70.1 123 39.0
MELO3C025367.2 Cucumis melo HOM05D003074 ORTHO05D002434 1.5e-10 69.7 108 40.7
Lsat_1_v5_gn_5_6000 Lactuca sativa HOM05D003074 ORTHO05D002434 1.5e-10 69.7 61 59.0
Potri.011G139400 Populus trichocarpa HOM05D003074 ORTHO05D002434 1.5e-10 69.7 57 63.2
DCAR_004216 Daucus carota HOM05D003074 ORTHO05D002434 1.9e-10 69.3 116 39.7
Dinv13888 Davidia involucrata HOM05D003074 ORTHO05D002434 1.9e-10 69.3 72 52.8
FAN11G2929 Fragaria x ananassa HOM05D003074 ORTHO05D002434 1.9e-10 69.3 140 37.9
Lalb_Chr04g0248431 Lupinus albus HOM05D003074 ORTHO05D002434 1.9e-10 69.3 104 41.3
Solyc12g005000.1 Solanum lycopersicum HOM05D003074 ORTHO05D002434 1.9e-10 69.3 101 48.5
FvH4_3g22640 Fragaria vesca HOM05D003074 ORTHO05D002434 2.5e-10 68.9 140 37.9
FAN16G0504 Fragaria x ananassa HOM05D003074 ORTHO05D002434 2.5e-10 68.9 140 37.9
FAN25G2410 Fragaria x ananassa HOM05D003074 ORTHO05D002434 2.5e-10 68.9 140 37.9
Sabra04G0008200 Salix brachista HOM05D003074 ORTHO05D002434 2.5e-10 68.9 67 47.8
vmacro03644 Vaccinium macrocarpon HOM05D003074 ORTHO05D002434 2.5e-10 68.9 115 37.4
FAN21G2959 Fragaria x ananassa HOM05D003074 ORTHO05D002434 3.3e-10 68.6 141 37.6
Manes.15G072100 Manihot esculenta HOM05D003074 ORTHO05D002434 3.3e-10 68.6 120 40.0
Thecc.06G219600 Theobroma cacao HOM05D003074 ORTHO05D002434 3.3e-10 68.6 118 39.0
Cc05_g13710 Coffea canephora HOM05D003074 ORTHO05D002434 4.3e-10 68.2 88 50.0
PGR004G0474 Punica granatum HOM05D003074 ORTHO05D002434 4.3e-10 68.2 60 60.0
Sed0010919 Sechium edule HOM05D003074 ORTHO05D002434 4.3e-10 68.2 117 40.2
TWI38G1232 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 4.3e-10 68.2 129 41.9
AUR62015773 Chenopodium quinoa HOM05D003074 ORTHO05D002434 5.6e-10 67.8 87 42.5
AUR62020442 Chenopodium quinoa HOM05D003074 ORTHO05D002434 7.3e-10 67.4 117 41.0
Manes.17G038600 Manihot esculenta HOM05D003074 ORTHO05D002434 7.3e-10 67.4 117 36.8
CiPaw.10G070500 Carya illinoinensis HOM05D003074 ORTHO05D002434 9.5e-10 67.0 67 53.7
DCAR_008152 Daucus carota HOM05D003074 ORTHO05D002434 9.5e-10 67.0 125 38.4
AUR62020443 Chenopodium quinoa HOM05D003074 ORTHO05D002434 1.2e-09 66.6 114 37.7
PGSC0003DMG400019879 Solanum tuberosum HOM05D003074 ORTHO05D002434 1.2e-09 66.6 103 37.9
Nitab4.5_0009995g0020 Nicotiana tabacum HOM05D003074 ORTHO05D002434 1.6e-09 66.2 95 48.4
Sabra11G0125400 Salix brachista HOM05D003074 ORTHO05D002434 1.6e-09 66.2 66 57.6
Eucgr.D01318 Eucalyptus grandis HOM05D003074 ORTHO05D002434 2.8e-09 65.5 119 40.3
QL05p073377 Quercus lobata HOM05D003074 ORTHO05D002434 2.8e-09 65.5 127 40.2
Duzib192G0001 Durio zibethinus HOM05D003074 ORTHO05D002434 6.2e-09 64.3 113 37.2
TPR.G34803 Trifolium pratense HOM05D003074 ORTHO05D002434 6.2e-09 64.3 53 60.4
arahy.Tifrunner.gnm1.ann1.22WBGR Arachis hypogaea HOM05D003074 ORTHO05D002434 8.0e-09 63.9 101 40.6
Eucgr.E04063 Eucalyptus grandis HOM05D003074 ORTHO05D002434 8.0e-09 63.9 114 38.6
Oeu063916.1 Olea europaea HOM05D003074 ORTHO05D002434 1.1e-08 63.5 110 40.0
Eucgr.F03465 Eucalyptus grandis HOM05D003074 ORTHO05D002434 1.8e-08 62.8 128 38.3
Potri.001G435400 Populus trichocarpa HOM05D003074 ORTHO05D002434 1.8e-08 62.8 111 43.2
Sc03g0008600 Simmondsia chinensis HOM05D003074 ORTHO05D002434 1.8e-08 62.8 60 53.3
Sopen12g001010 Solanum pennellii HOM05D003074 ORTHO05D002434 1.8e-08 62.8 57 68.4
MELO3C025368.2 Cucumis melo HOM05D003074 ORTHO05D002434 2.3e-08 62.4 68 48.5
arahy.Tifrunner.gnm1.ann1.B0CFPV Arachis hypogaea HOM05D003074 ORTHO05D002434 3.1e-08 62.0 58 58.6
ClCG03G004770 Citrullus lanatus HOM05D003074 ORTHO05D002434 3.1e-08 62.0 56 51.8
Glyma.02G290900 Glycine max HOM05D003074 ORTHO05D002434 3.1e-08 62.0 57 59.6
Cc09_g01730 Coffea canephora HOM05D003074 ORTHO05D002434 4.0e-08 61.6 131 33.6
Eucgr.E04061 Eucalyptus grandis HOM05D003074 ORTHO05D002434 4.0e-08 61.6 114 38.6
Lalb_Chr15g0087561 Lupinus albus HOM05D008677 ORTHO05D002434 5.2e-08 61.2 119 38.7
RcHm_v2.0_Chr5g0039411 Rosa chinensis HOM05D003074 ORTHO05D002434 5.2e-08 61.2 64 54.7
ClCG10G005340 Citrullus lanatus HOM05D003074 ORTHO05D002434 6.8e-08 60.8 60 50.0
Sopen02g011120 Solanum pennellii HOM05D003074 ORTHO05D002434 6.8e-08 60.8 103 35.0
Eucgr.E04066 Eucalyptus grandis HOM05D003074 ORTHO05D002434 8.9e-08 60.5 114 38.6
Sc17g0007340 Simmondsia chinensis HOM05D003074 ORTHO05D002434 8.9e-08 60.5 114 35.1
Gorai.009G178200 Gossypium raimondii HOM05D003074 ORTHO05D002434 1.2e-07 60.1 124 37.9
Medtr5g092710 Medicago truncatula HOM05D003074 ORTHO05D002434 1.2e-07 60.1 97 37.1
Rhsim06G0216700 Rhododendron simsii HOM05D003074 ORTHO05D002434 1.2e-07 60.1 84 42.9
MELO3C002460.2 Cucumis melo HOM05D003074 ORTHO05D002434 1.5e-07 59.7 73 43.8
CsaV3_1G010810 Cucumis sativus L. HOM05D003074 ORTHO05D002434 1.5e-07 59.7 55 52.7
MD10G1320500 Malus domestica HOM05D003074 ORTHO05D002434 2.6e-07 58.9 139 38.8
AUR62015774 Chenopodium quinoa HOM05D003074 ORTHO05D002434 3.4e-07 58.5 108 38.0
Phvul.006G150100 Phaseolus vulgaris HOM05D008677 ORTHO05D002434 3.4e-07 58.5 90 38.9
AUR62020444 Chenopodium quinoa HOM05D003074 ORTHO05D002434 4.4e-07 58.2 114 37.7
Eucgr.E04064 Eucalyptus grandis HOM05D003074 ORTHO05D002434 4.4e-07 58.2 108 38.0
Sed0005061 Sechium edule HOM05D003074 ORTHO05D002434 4.4e-07 58.2 106 35.8
Eucgr.E04062 Eucalyptus grandis HOM05D003074 ORTHO05D002434 5.8e-07 57.8 118 35.6
Gohir.A05G169900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 5.8e-07 57.8 125 36.8
Aqoxy1G02175 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 9.8e-07 57.0 61 42.6
Aqoxy1G02176 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 9.8e-07 57.0 75 38.7
CDE05G0485 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 9.8e-07 57.0 114 32.5
Medtr2g023010 Medicago truncatula HOM05D008677 ORTHO05D002434 1.7e-06 56.2 92 37.0
Glyma.15G107300 Glycine max HOM05D008677 ORTHO05D002434 2.2e-06 55.8 105 36.2
Sp7g20110 Schrenkiella parvula HOM05D003074 ORTHO05D002434 2.9e-06 55.5 118 33.1
Aa31LG6G3910 Aethionema arabicum HOM05D003074 ORTHO05D002434 3.7e-06 55.1 85 38.8
CsaV3_3G005050 Cucumis sativus L. HOM05D003074 ORTHO05D002434 3.7e-06 55.1 58 50.0
Sc16g0006080 Simmondsia chinensis HOM05D003074 ORTHO05D002434 3.7e-06 55.1 111 36.9
Ca_00651_v3 Cicer arietinum L. HOM05D008677 ORTHO05D002434 4.9e-06 54.7 95 36.8
Thhalv10021814m.g Eutrema salsugineum HOM05D003074 ORTHO05D002434 4.9e-06 54.7 115 33.9
Carub.0007s1942 Capsella rubella HOM05D003074 ORTHO05D002434 6.4e-06 54.3 86 39.5
Eucgr.E04060 Eucalyptus grandis HOM05D003074 ORTHO05D002434 6.4e-06 54.3 65 46.2
Gohir.D05G173050 Gossypium hirsutum HOM05D003074 ORTHO05D002434 6.4e-06 54.3 124 37.1
Psat1g181240 Pisum sativum HOM05D008677 ORTHO05D002434 8.3e-06 53.9 67 44.8
THA.LOC104812967 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 8.3e-06 53.9 59 49.2


User provided reference genes

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