Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 8.3e-194 680.2 359 100.0
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 6.0e-184 647.5 359 94.4
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 3.7e-165 585.1 359 86.6
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 8.1e-165 583.9 362 85.4
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 3.9e-151 538.5 362 80.9
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 4.2e-145 518.5 360 79.7
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 3.8e-106 389.0 379 59.1
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 2.1e-104 383.3 379 59.1
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 2.8e-96 356.3 381 54.1
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 6.1e-96 355.1 377 55.7
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 9.8e-94 347.8 368 54.3
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 6.4e-93 345.1 365 55.1
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.1e-92 344.4 381 52.5
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 1.4e-92 344.0 382 54.7
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.2e-92 342.8 368 52.4
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 5.4e-92 342.0 379 53.0
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 1.2e-91 340.9 379 53.3
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 1.6e-91 340.5 381 52.0
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 4.6e-91 339.0 384 51.3
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.0e-91 338.6 368 52.2
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 1.0e-90 337.8 379 52.2
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 1.7e-90 337.0 378 51.9
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 1.7e-90 337.0 380 50.5
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 1.1e-89 334.3 369 52.0
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 1.5e-89 334.0 327 58.4
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 1.5e-89 334.0 365 55.1
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.5e-89 333.2 368 51.6
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 3.3e-89 332.8 365 53.2
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 3.6e-88 329.3 371 53.6
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 1.4e-87 327.4 370 51.1
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.3e-87 326.6 377 51.2
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 2.3e-87 326.6 370 51.4
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 2.3e-87 326.6 370 51.4
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 8.9e-87 324.7 380 51.6
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 8.9e-87 324.7 358 51.7
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 1.5e-86 323.9 383 49.3
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 3.4e-86 322.8 342 52.9
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 4.4e-86 322.4 422 47.9
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 5.8e-86 322.0 356 51.7
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 5.8e-86 322.0 336 53.9
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 9.8e-86 321.2 372 51.6
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 1.3e-85 320.9 371 50.9
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.7e-85 320.5 370 50.8
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 4.9e-85 318.9 367 50.7
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 8.3e-85 318.2 372 50.8
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 7.0e-84 315.1 372 50.0
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 9.2e-84 314.7 370 50.0
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 2.7e-83 313.2 373 49.9
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 2.7e-83 313.2 372 50.0
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 3.5e-83 312.8 349 52.4
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 6.0e-83 312.0 367 52.0
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 1.0e-82 311.2 379 49.3
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.3e-82 310.8 370 49.7
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 2.5e-81 306.6 372 47.8
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 4.3e-81 305.8 375 47.5
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 2.1e-80 303.5 379 49.9
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 4.7e-80 302.4 376 47.9
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 6.2e-80 302.0 372 48.9
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 1.1e-79 301.2 323 54.5
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 4.0e-79 299.3 376 47.6
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 2.6e-78 296.6 369 47.7
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 2.6e-78 296.6 371 47.4
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 4.4e-78 295.8 355 47.9
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 5.8e-78 295.4 371 48.0
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 1.7e-77 293.9 375 46.4
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.9e-77 293.1 369 46.1
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 4.9e-77 292.4 371 48.8
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 6.4e-77 292.0 377 45.6
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 8.3e-77 291.6 377 45.6
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 1.1e-76 291.2 353 50.1
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 2.4e-76 290.0 327 54.4
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 1.2e-75 287.7 359 47.4
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 1.6e-75 287.3 326 50.9
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 2.1e-75 287.0 371 48.5
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 3.5e-75 286.2 362 48.9
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 6.0e-75 285.4 375 46.1
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.0e-74 284.6 367 46.9
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 1.3e-74 284.3 369 45.5
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 2.3e-74 283.5 310 51.9
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.1e-73 281.2 367 46.6
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 3.3e-73 279.6 375 47.5
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 2.1e-72 276.9 377 45.4
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 3.6e-72 276.2 372 45.2
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 1.4e-71 274.2 303 52.1
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.4e-71 274.2 360 46.1
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 2.4e-71 273.5 372 44.9
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 5.2e-71 272.3 370 43.0
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 1.5e-70 270.8 379 44.6
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 1.5e-70 270.8 354 46.9
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 2.0e-70 270.4 373 44.8
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 2.0e-70 270.4 373 44.8
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 2.0e-70 270.4 372 47.8
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 3.4e-70 269.6 370 43.5
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 3.8e-69 266.2 386 43.8
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 4.9e-69 265.8 371 42.9
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 6.4e-69 265.4 372 47.0
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 1.1e-68 264.6 367 45.0
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 2.4e-68 263.5 369 44.2
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 2.4e-68 263.5 372 43.8
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 2.4e-68 263.5 364 45.3
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 5.4e-68 262.3 373 42.9
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 9.2e-68 261.5 369 44.2
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 1.6e-67 260.8 369 43.6
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 2.1e-67 260.4 367 43.9
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 2.1e-67 260.4 369 43.6
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 2.1e-67 260.4 368 44.6
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 2.1e-67 260.4 368 44.6
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 1.0e-66 258.1 369 44.2
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 1.3e-66 257.7 353 43.9
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.3e-66 257.7 369 40.4
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 1.7e-66 257.3 369 44.2
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 4.8e-64 249.2 372 43.8
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 6.2e-64 248.8 372 43.8
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 6.2e-64 248.8 372 43.8
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 1.4e-63 247.7 327 46.5
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 3.1e-63 246.5 378 40.2
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 1.5e-62 244.2 343 43.1
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 2.6e-62 243.4 374 41.2
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 8.4e-61 238.4 373 40.5
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.1e-60 238.0 381 40.4
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.2e-59 234.6 382 40.8
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 3.0e-58 229.9 322 47.2
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 8.7e-58 228.4 358 42.2
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 3.1e-55 219.9 380 38.4
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 4.5e-54 216.1 328 40.2
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 1.4e-52 211.1 281 45.9
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 1.2e-46 191.4 332 39.2
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 5.8e-46 189.1 277 41.5
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 3.3e-41 173.3 291 40.9
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 1.2e-38 164.9 197 46.7
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 3.8e-37 159.8 129 63.6
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 3.7e-32 143.3 132 57.6
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 1.1e-31 141.7 129 58.1
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 1.4e-31 141.4 225 40.0
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 2.6e-30 137.1 380 33.7
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 1.6e-27 127.9 383 33.7
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 2.5e-25 120.6 75 80.0
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 9.7e-25 118.6 157 42.0
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 4.8e-24 116.3 252 35.7
Peaxi162Scf00598g00061 Petunia axillaris HOM05D002428 ORTHO05D005085 4.1e-23 113.2 251 35.9
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 9.1e-23 112.1 214 36.4
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.0e-18 97.1 140 37.9
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.9e-18 96.7 138 39.1
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 4.4e-17 93.2 374 28.1
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 4.4e-17 93.2 381 28.6
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 4.8e-16 89.7 114 42.1
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.4e-15 87.4 132 37.9
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 2.4e-15 87.4 379 25.9
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 5.5e-12 76.3 103 40.8
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 8.0e-11 72.4 93 48.4
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 1.5e-09 68.2 93 48.4
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 5.7e-09 66.2 63 58.7
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 1.8e-07 61.2 60 58.3
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 3.1e-07 60.5 80 48.8
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 7.0e-07 59.3 80 47.5


User provided reference genes

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