Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400029516 Solanum tuberosum HOM05D007313 ORTHO05D005299 7.2e-30 133.3 68 100.0
Sopen04g003130 Solanum pennellii HOM05D007313 ORTHO05D005299 4.4e-27 124.0 71 93.0
Solyc04g007990.1 Solanum lycopersicum HOM05D007313 ORTHO05D005299 8.2e-26 119.8 71 90.1
Rhsim09G0090300 Rhododendron simsii HOM05D007313 ORTHO05D005299 4.4e-11 70.9 60 70.0
DCAR_023578 Daucus carota HOM05D007313 ORTHO05D005299 2.2e-10 68.6 56 60.7
Dinv10480 Davidia involucrata HOM05D007313 ORTHO05D005299 3.7e-10 67.8 56 64.3
Atru.chr11.945 Acer truncatum HOM05D007313 ORTHO05D005299 1.8e-09 65.5 54 63.0
Duzib268G0019 Durio zibethinus HOM05D007313 ORTHO05D005299 3.1e-09 64.7 77 54.5
DCAR_026801 Daucus carota HOM05D007313 ORTHO05D005299 4.1e-09 64.3 77 51.9
CSS0045507 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 7.0e-09 63.5 68 61.8
Manes.15G133700 Manihot esculenta HOM05D007313 ORTHO05D005299 7.0e-09 63.5 57 64.9
Gohir.A03G114900 Gossypium hirsutum HOM05D007313 ORTHO05D005299 9.1e-09 63.2 79 51.9
Gohir.D02G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 9.1e-09 63.2 54 63.0
Gorai.005G156500 Gossypium raimondii HOM05D007313 ORTHO05D005299 9.1e-09 63.2 54 63.0
Potri.008G134100 Populus trichocarpa HOM05D007313 ORTHO05D005299 9.1e-09 63.2 54 64.8
AT1G67920 Arabidopsis thaliana HOM05D007313 ORTHO05D005299 1.2e-08 62.8 68 54.4
Duzib248G0390 Durio zibethinus HOM05D007313 ORTHO05D005299 1.2e-08 62.8 68 58.8
CSS0007506 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 1.6e-08 62.4 68 60.3
AL2G26720 Arabidopsis lyrata HOM05D007313 ORTHO05D005299 2.7e-08 61.6 68 52.9
COL.COLO4_16580 Corchorus olitorius HOM05D007313 ORTHO05D005299 2.7e-08 61.6 85 50.6
Carub.0002s1441 Capsella rubella HOM05D007313 ORTHO05D005299 3.5e-08 61.2 65 55.4
Manes.17G083600 Manihot esculenta HOM05D007313 ORTHO05D005299 4.5e-08 60.8 75 52.0
ECA233G5799 Erigeron canadensis HOM05D007313 ORTHO05D005299 5.9e-08 60.5 64 53.1
Migut.E00472 Erythranthe guttata HOM05D007313 ORTHO05D005299 7.7e-08 60.1 76 50.0
Thecc.02G291900 Theobroma cacao HOM05D007313 ORTHO05D005299 7.7e-08 60.1 54 61.1
Gohir.A01G147300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.3e-07 59.3 78 51.3
Gohir.D01G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.3e-07 59.3 78 51.3
Gorai.002G172500 Gossypium raimondii HOM05D007313 ORTHO05D005299 1.3e-07 59.3 78 51.3
TAR371G1237 Trochodendron aralioides HOM05D008500 ORTHO05D005299 1.7e-07 58.9 76 52.6
TAR371G0465 Trochodendron aralioides HOM05D008500 ORTHO05D005299 2.9e-07 58.2 75 46.7
CARHR060560 Cardamine hirsuta HOM05D007313 ORTHO05D005299 3.8e-07 57.8 68 51.5
Ciclev10017248m.g Citrus clementina HOM05D007313 ORTHO05D005299 3.8e-07 57.8 70 51.4
Sp5g22920 Schrenkiella parvula HOM05D007313 ORTHO05D005299 3.8e-07 57.8 68 51.5
BcaC08g46017 Brassica carinata HOM05D007313 ORTHO05D005299 5.0e-07 57.4 66 53.0
C06p38120 Brassica napus HOM05D007313 ORTHO05D005299 5.0e-07 57.4 66 53.0
BolC6t38909H Brassica oleracea HOM05D007313 ORTHO05D005299 5.0e-07 57.4 66 53.0
A07p32280 Brassica napus HOM05D007313 ORTHO05D005299 6.6e-07 57.0 66 53.0
BraA07t30853Z Brassica rapa HOM05D007313 ORTHO05D005299 6.6e-07 57.0 66 53.0
BraA07t31073Z Brassica rapa HOM05D007313 ORTHO05D005299 8.6e-07 56.6 72 52.8
SalBow2G1257 Salvia bowleyana HOM05D007313 ORTHO05D005299 8.6e-07 56.6 68 54.4
BcaB03g15149 Brassica carinata HOM05D007313 ORTHO05D005299 1.1e-06 56.2 72 51.4
A07p34460 Brassica napus HOM05D007313 ORTHO05D005299 1.1e-06 56.2 72 52.8
TAR629G3106 Trochodendron aralioides HOM05D007313 ORTHO05D005299 1.1e-06 56.2 69 52.2
A08p26710 Brassica napus HOM05D007313 ORTHO05D005299 1.5e-06 55.8 74 50.0
BraA08t34617Z Brassica rapa HOM05D007313 ORTHO05D005299 1.5e-06 55.8 74 50.0
BcaB03g12049 Brassica carinata HOM05D007313 ORTHO05D005299 1.9e-06 55.5 74 48.6
BcaB03g15385 Brassica carinata HOM05D007313 ORTHO05D005299 1.9e-06 55.5 70 52.9
Thhalv10019740m.g Eutrema salsugineum HOM05D007313 ORTHO05D005299 1.9e-06 55.5 68 52.9
BcaB05g24323 Brassica carinata HOM05D007313 ORTHO05D005299 3.3e-06 54.7 68 50.0
BcaC03g14888 Brassica carinata HOM05D007313 ORTHO05D005299 3.3e-06 54.7 68 50.0
A02p14560 Brassica napus HOM05D007313 ORTHO05D005299 3.3e-06 54.7 68 51.5
C02p23620 Brassica napus HOM05D007313 ORTHO05D005299 3.3e-06 54.7 68 50.0
BolC2t08492H Brassica oleracea HOM05D007313 ORTHO05D005299 3.3e-06 54.7 68 50.0
BraA02t06526Z Brassica rapa HOM05D007313 ORTHO05D005299 3.3e-06 54.7 68 51.5
CARHR026470 Cardamine hirsuta HOM05D007313 ORTHO05D005299 4.2e-06 54.3 72 45.8
Sabra08G0102600 Salix brachista HOM05D007313 ORTHO05D005299 4.2e-06 54.3 51 58.8
Sp1g23170 Schrenkiella parvula HOM05D007313 ORTHO05D005299 4.2e-06 54.3 75 49.3
THA.LOC104825566 Tarenaya hassleriana HOM05D007313 ORTHO05D005299 7.2e-06 53.5 59 59.3
BcaC08g46215 Brassica carinata HOM05D007313 ORTHO05D005299 9.5e-06 53.1 68 48.5
BolC6t39221H Brassica oleracea HOM05D007313 ORTHO05D005299 9.5e-06 53.1 68 48.5
Potri.010G107200 Populus trichocarpa HOM05D007313 ORTHO05D005299 9.5e-06 53.1 53 60.4
QL03p035637 Quercus lobata HOM05D007313 ORTHO05D005299 9.5e-06 53.1 83 43.4


User provided reference genes

Program Settings