Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 2.4e-170 602.1 299 100.0
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 8.6e-160 567.0 299 94.3
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 2.3e-157 558.9 299 93.0
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 7.5e-148 527.3 299 88.3
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 5.6e-143 511.1 300 85.3
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 6.8e-141 504.2 310 81.3
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 1.2e-108 397.1 300 63.7
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 2.4e-106 389.4 298 63.8
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 2.3e-104 382.9 300 62.7
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 8.7e-104 380.9 298 63.8
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 1.1e-101 374.0 300 62.3
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 2.4e-101 372.9 298 61.7
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 2.0e-100 369.8 300 62.7
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 6.5e-99 364.8 304 62.2
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 6.5e-99 364.8 299 60.9
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 1.9e-98 363.2 302 57.6
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.5e-98 362.8 301 59.8
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 3.2e-98 362.5 277 63.2
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 5.5e-98 361.7 301 59.5
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 1.6e-97 360.1 299 60.9
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 2.1e-97 359.8 284 62.0
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.7e-97 359.4 265 65.3
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 2.7e-97 359.4 265 65.3
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 2.7e-97 359.4 299 60.2
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 3.5e-97 359.0 265 65.3
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 3.5e-97 359.0 265 65.3
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 7.9e-97 357.8 268 64.2
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 7.9e-97 357.8 300 59.3
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 2.3e-96 356.3 280 62.9
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 3.9e-96 355.5 312 58.7
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 5.1e-96 355.1 280 66.1
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 5.1e-96 355.1 309 58.3
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 6.7e-96 354.8 280 62.5
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.1e-95 354.0 299 61.2
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 1.1e-95 354.0 268 62.3
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 1.5e-95 353.6 306 58.5
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 1.5e-95 353.6 280 62.9
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 1.5e-95 353.6 300 60.0
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.9e-95 353.2 260 66.9
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 9.7e-95 350.9 265 64.5
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 2.8e-94 349.4 262 65.3
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 6.3e-94 348.2 265 64.9
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 8.2e-94 347.8 303 58.7
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 2.4e-93 346.3 260 62.3
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 6.9e-93 344.7 293 59.4
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 2.0e-92 343.2 302 58.9
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 3.4e-92 342.4 302 57.6
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 4.5e-92 342.0 299 57.5
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 7.7e-92 341.3 298 57.0
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 1.3e-91 340.5 266 63.5
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 3.8e-91 339.0 263 62.0
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 3.8e-91 339.0 287 59.6
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 4.2e-90 335.5 263 61.6
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 5.5e-90 335.1 299 56.2
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 7.2e-90 334.7 303 55.4
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 9.4e-90 334.3 258 63.2
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 9.4e-90 334.3 294 56.8
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 9.4e-90 334.3 273 57.5
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 1.2e-89 334.0 301 56.8
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 2.7e-89 332.8 251 61.4
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 7.9e-89 331.3 278 59.7
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 1.0e-88 330.9 297 55.2
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 2.3e-88 329.7 300 55.3
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 6.7e-88 328.2 257 61.5
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 1.5e-87 327.0 254 63.4
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 2.5e-87 326.2 279 61.3
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 3.3e-87 325.9 261 59.0
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 3.3e-87 325.9 261 59.0
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 4.3e-87 325.5 261 62.5
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 5.7e-87 325.1 255 60.4
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 2.8e-86 322.8 298 53.7
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 4.8e-86 322.0 245 64.1
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 1.1e-85 320.9 220 70.0
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 1.8e-85 320.1 299 55.5
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 6.9e-85 318.2 313 53.7
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 1.2e-84 317.4 266 57.9
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 1.5e-84 317.0 254 58.7
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 7.7e-84 314.7 250 58.8
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 1.0e-83 314.3 303 53.5
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 3.8e-83 312.4 264 59.1
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 1.4e-82 310.5 265 59.6
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 2.5e-82 309.7 263 59.7
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 3.2e-82 309.3 289 57.4
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 1.2e-81 307.4 264 59.1
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.8e-80 303.5 278 56.5
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 2.2e-78 296.6 248 59.7
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 8.2e-78 294.7 242 58.7
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 8.2e-78 294.7 266 54.5
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 4.5e-76 288.9 263 55.1
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 1.3e-75 287.3 224 64.3
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 2.2e-75 286.6 233 60.1
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 2.9e-75 286.2 268 53.0
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 5.0e-75 285.4 257 56.0
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 6.5e-75 285.0 236 59.7
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 4.2e-74 282.3 251 55.8
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.6e-73 280.4 292 52.4
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.0e-72 277.7 236 60.2
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 1.4e-72 277.3 251 54.2
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 8.8e-72 274.6 248 55.2
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 5.7e-71 271.9 306 48.4
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 3.7e-70 269.2 257 55.6
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 1.8e-69 266.9 319 45.5
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 5.5e-66 255.4 277 48.7
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 3.6e-65 252.7 289 49.5
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 1.0e-64 251.1 295 44.4
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 1.0e-64 251.1 214 57.5
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 1.8e-64 250.4 259 51.0
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 1.8e-64 250.4 242 49.6
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.6e-60 237.3 249 54.2
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.6e-60 237.3 249 54.2
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.6e-60 237.3 212 60.8
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 2.0e-60 236.9 172 68.6
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 5.9e-60 235.3 214 53.7
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 1.7e-59 233.8 251 47.0
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 7.2e-58 228.4 290 41.4
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.6e-57 227.3 216 53.2
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 4.7e-57 225.7 209 56.0
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.4e-53 214.2 184 54.3
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 2.3e-51 206.8 245 47.8
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 8.6e-51 204.9 243 45.3
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 9.5e-50 201.4 214 51.4
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 2.0e-47 193.7 218 44.5
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 2.0e-44 183.7 140 62.9
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 1.0e-43 181.4 121 66.9
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 1.3e-43 181.0 175 51.4
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 1.3e-43 181.0 179 54.2
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 1.2e-41 174.5 143 57.3
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 1.8e-40 170.6 150 56.7
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 2.6e-39 166.8 130 62.3
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 5.8e-39 165.6 227 40.1
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 3.0e-35 153.3 250 34.8
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 2.5e-34 150.2 148 52.0
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 1.8e-32 144.1 87 75.9
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 4.0e-32 142.9 157 48.4
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 9.8e-31 138.3 284 31.3
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 1.6e-28 131.0 79 74.7
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 4.6e-28 129.4 129 51.9
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 3.3e-26 123.2 171 45.0
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 6.2e-25 119.0 102 52.0
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 1.5e-23 114.4 70 70.0
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 6.2e-17 92.4 170 31.2
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.7e-14 84.3 60 68.3
Peaxi162Scf00376g00009 Petunia axillaris HOM05D005212 ORTHO05D006353 6.9e-08 62.4 31 83.9
PRCOL_00004527 Prasinoderma coloniale HOM05D005212 ORTHO05D006353 1.5e-07 61.2 177 28.2
ATR0594G067 Amborella trichopoda HOM05D005212 ORTHO05D006353 4.4e-07 59.7 90 40.0
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 1.7e-06 57.8 50 44.0


User provided reference genes

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