Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g003060 Solanum pennellii HOM05D001822 ORTHO05D001744 3.3e-19 97.4 52 100.0
PGSC0003DMG400029475 Solanum tuberosum HOM05D001822 ORTHO05D001744 3.3e-19 97.4 52 100.0
Solyc04g007920.1 Solanum lycopersicum HOM05D001822 ORTHO05D001744 7.5e-19 96.3 52 98.1
Nitab4.5_0000916g0080 Nicotiana tabacum HOM05D001822 ORTHO05D001744 4.8e-18 93.6 52 92.3
Peaxi162Scf00723g00510 Petunia axillaris HOM05D001822 ORTHO05D001744 6.3e-18 93.2 52 94.2
Nitab4.5_0009319g0010 Nicotiana tabacum HOM05D001822 ORTHO05D001744 1.1e-17 92.4 52 90.4
Aqoxy3G04080 Aquilegia oxysepala HOM05D001822 ORTHO05D001744 1.7e-15 85.1 52 84.6
TAR622G1150 Trochodendron aralioides HOM05D001822 ORTHO05D001744 3.8e-15 84.0 52 82.7
TAR622G1442 Trochodendron aralioides HOM05D000655 ORTHO05D001166 3.8e-15 84.0 52 82.7
TAR371G0055 Trochodendron aralioides HOM05D001822 ORTHO05D001744 6.5e-15 83.2 52 82.7
Ciclev10018373m.g Citrus clementina HOM05D001822 ORTHO05D001744 8.5e-15 82.8 52 78.8
TWI53G1608 Tripterygium wilfordii HOM05D001822 ORTHO05D001744 8.5e-15 82.8 52 78.8
TWI74G0761 Tripterygium wilfordii HOM05D001822 ORTHO05D001744 8.5e-15 82.8 52 78.8
AL6G28240 Arabidopsis lyrata HOM05D001822 ORTHO05D001744 1.1e-14 82.4 52 78.8
AT5G17190 Arabidopsis thaliana HOM05D001822 ORTHO05D001744 1.1e-14 82.4 52 78.8
Carub.0006s1538 Capsella rubella HOM05D001822 ORTHO05D001744 1.1e-14 82.4 52 78.8
CARHR196020 Cardamine hirsuta HOM05D001822 ORTHO05D001744 1.1e-14 82.4 52 78.8
Lalb_Chr09g0330961 Lupinus albus HOM05D001822 ORTHO05D001744 1.1e-14 82.4 52 78.8
Lalb_Chr16g0387671 Lupinus albus HOM05D001822 ORTHO05D001744 1.1e-14 82.4 52 78.8
Atru.chr11.523 Acer truncatum HOM05D001822 ORTHO05D001744 1.5e-14 82.0 52 78.8
DCAR_023583 Daucus carota HOM05D018363 ORTHO05D001744 1.5e-14 82.0 52 78.8
Hma1.2p1_0089F.1_g045480 Hydrangea macrophylla HOM05D001822 ORTHO05D001744 1.5e-14 82.0 52 78.8
Hma1.2p1_2277F.1_g318650 Hydrangea macrophylla HOM05D001822 ORTHO05D001744 1.5e-14 82.0 52 78.8
Lj4g0007453 Lotus japonicus HOM05D001822 ORTHO05D001744 1.5e-14 82.0 52 78.8
unitig_32.g11795 Utricularia gibba HOM05D001822 ORTHO05D001744 1.5e-14 82.0 52 76.9
HanXRQChr07g0189141 Helianthus annuus HOM05D001822 ORTHO05D001744 1.9e-14 81.6 52 78.8
QL03p035034 Quercus lobata HOM05D001822 ORTHO05D001744 1.9e-14 81.6 51 78.4
ClCG07G005860 Citrullus lanatus HOM05D001822 ORTHO05D001744 2.5e-14 81.3 52 78.8
Thhalv10015011m.g Eutrema salsugineum HOM05D001822 ORTHO05D001744 2.5e-14 81.3 52 76.9
Lsat_1_v5_gn_2_68860 Lactuca sativa HOM05D001822 ORTHO05D001744 2.5e-14 81.3 52 76.9
Nn3g18333 Nelumbo nucifera HOM05D001822 ORTHO05D001744 2.5e-14 81.3 52 78.8
PSO017G3124 Papaver somniferum HOM05D001822 ORTHO05D001744 2.5e-14 81.3 52 78.8
PSO478G0968 Papaver somniferum HOM05D001822 ORTHO05D001744 2.5e-14 81.3 52 78.8
Phvul.002G319800 Phaseolus vulgaris HOM05D001822 ORTHO05D001744 2.5e-14 81.3 52 76.9
Prupe.1G331700 Prunus persica HOM05D001822 ORTHO05D001744 2.5e-14 81.3 52 78.8
Sp6g27040 Schrenkiella parvula HOM05D001822 ORTHO05D001744 2.5e-14 81.3 52 76.9
Sed0016512 Sechium edule HOM05D001822 ORTHO05D001744 2.5e-14 81.3 52 78.8
THA.LOC104820873 Tarenaya hassleriana HOM05D001822 ORTHO05D001744 2.5e-14 81.3 52 75.0
VMungo0251G1677 Vigna mungo HOM05D001822 ORTHO05D001744 2.5e-14 81.3 52 76.9
FAN17G2319 Fragaria x ananassa HOM05D001822 ORTHO05D001744 3.2e-14 80.9 52 76.9
FAN22G2215 Fragaria x ananassa HOM05D001822 ORTHO05D001744 3.2e-14 80.9 52 76.9
MD13G1029700 Malus domestica HOM05D001822 ORTHO05D001744 3.2e-14 80.9 52 76.9
MD16G1020500 Malus domestica HOM05D001822 ORTHO05D001744 3.2e-14 80.9 52 76.9
Thecc.02G290800 Theobroma cacao HOM05D001822 ORTHO05D001744 3.2e-14 80.9 52 76.9
TAR629G1781 Trochodendron aralioides HOM05D001822 ORTHO05D001744 3.2e-14 80.9 52 76.9
Manes.17G082300 Manihot esculenta HOM05D001822 ORTHO05D001744 4.2e-14 80.5 52 75.0
Medtr8g104980 Medicago truncatula HOM05D001822 ORTHO05D001744 4.2e-14 80.5 52 76.9
THA.LOC104827222 Tarenaya hassleriana HOM05D001822 ORTHO05D001744 4.2e-14 80.5 52 73.1
BcaC03g18536 Brassica carinata HOM05D001822 ORTHO05D001744 5.5e-14 80.1 52 76.9
BcaC03g18537 Brassica carinata HOM05D001822 ORTHO05D001744 5.5e-14 80.1 52 76.9
BcaNung00423 Brassica carinata HOM05D001822 ORTHO05D001744 5.5e-14 80.1 52 76.9
A02p04000 Brassica napus HOM05D001822 ORTHO05D001744 5.5e-14 80.1 52 76.9
C02p08810 Brassica napus HOM05D001822 ORTHO05D001744 5.5e-14 80.1 52 76.9
BraA02t05363Z Brassica rapa HOM05D001822 ORTHO05D001744 5.5e-14 80.1 52 76.9
CSS0017279 Camellia sinensis var. sinensis HOM05D001822 ORTHO05D001744 5.5e-14 80.1 52 76.9
CSS0030325 Camellia sinensis var. sinensis HOM05D001822 ORTHO05D001744 5.5e-14 80.1 52 76.9
ECA238G0297 Erigeron canadensis HOM05D001822 ORTHO05D001744 5.5e-14 80.1 52 73.1
PGR119G2246 Punica granatum HOM05D001822 ORTHO05D001744 5.5e-14 80.1 52 76.9
SHI04455 Sapria himalayana HOM05D001822 ORTHO05D001744 5.5e-14 80.1 48 81.2
SGA_v2.0_scaffold45G17164 Striga asiatica HOM05D001822 ORTHO05D001744 5.5e-14 80.1 50 80.0
ATR0564G376 Amborella trichopoda HOM05D001822 ORTHO05D001744 7.2e-14 79.7 52 76.9
CANSAT01G1975 Cannabis sativa HOM05D001822 ORTHO05D001744 7.2e-14 79.7 48 83.3
CARHR077180 Cardamine hirsuta HOM05D001822 ORTHO05D001744 7.2e-14 79.7 52 73.1
Duzib268G0005 Durio zibethinus HOM05D001822 ORTHO05D001744 7.2e-14 79.7 52 75.0
Glyma.08G042700 Glycine max HOM05D001822 ORTHO05D001744 7.2e-14 79.7 52 75.0
Gohir.D02G141400 Gossypium hirsutum HOM05D001822 ORTHO05D001744 7.2e-14 79.7 52 76.9
Gorai.N021300 Gossypium raimondii HOM05D001822 ORTHO05D001744 7.2e-14 79.7 52 76.9
MBI19_g34083_MAGBIO Magnolia biondii HOM05D001822 ORTHO05D001744 7.2e-14 79.7 52 76.9
PGR102G0630 Punica granatum HOM05D001822 ORTHO05D001744 7.2e-14 79.7 52 76.9
Solyc04g014490.1 Solanum lycopersicum HOM05D001822 ORTHO05D001744 7.2e-14 79.7 52 80.8
Sopen04g006620 Solanum pennellii HOM05D001822 ORTHO05D001744 7.2e-14 79.7 52 80.8
PGSC0003DMG400023621 Solanum tuberosum HOM05D001822 ORTHO05D001744 7.2e-14 79.7 52 80.8
AL3G12770 Arabidopsis lyrata HOM05D001822 ORTHO05D001744 9.4e-14 79.3 52 73.1
DCAR_014169 Daucus carota HOM05D001822 ORTHO05D001744 9.4e-14 79.3 52 75.0
Duzib251G0670 Durio zibethinus HOM05D001822 ORTHO05D001744 9.4e-14 79.3 52 76.9
Migut.K00913 Erythranthe guttata HOM05D001822 ORTHO05D001744 9.4e-14 79.3 52 75.0
Psat7g009160 Pisum sativum HOM05D001822 ORTHO05D001744 9.4e-14 79.3 52 75.0
Potri.010G108000 Populus trichocarpa HOM05D001822 ORTHO05D001744 9.4e-14 79.3 52 76.9
Sabra10G0079000 Salix brachista HOM05D001822 ORTHO05D001744 9.4e-14 79.3 52 75.0
Sed0017896 Sechium edule HOM05D001822 ORTHO05D001744 9.4e-14 79.3 52 75.0
THA.LOC104802914 Tarenaya hassleriana HOM05D001822 ORTHO05D001744 9.4e-14 79.3 52 73.1
TAR371G0336 Trochodendron aralioides HOM05D001822 ORTHO05D001744 9.4e-14 79.3 49 81.6
GSVIVG01011676001 Vitis vinifera HOM05D001822 ORTHO05D001744 9.4e-14 79.3 52 75.0
unitig_748.g8635 Utricularia gibba HOM05D001822 ORTHO05D001744 1.2e-13 79.0 52 73.1
COL.COLO4_16568 Corchorus olitorius HOM05D001822 ORTHO05D001744 1.6e-13 78.6 52 71.2
Gohir.A01G148518 Gossypium hirsutum HOM05D001822 ORTHO05D001744 1.6e-13 78.6 52 75.0
Gohir.D01G141200 Gossypium hirsutum HOM05D001822 ORTHO05D001744 1.6e-13 78.6 52 75.0
Gorai.002G173500 Gossypium raimondii HOM05D001822 ORTHO05D001744 1.6e-13 78.6 52 75.0
Potri.008G133600 Populus trichocarpa HOM05D001822 ORTHO05D001744 1.6e-13 78.6 52 75.0
PGR083G0963 Punica granatum HOM05D001822 ORTHO05D001744 1.6e-13 78.6 52 75.0
Sp3g02200 Schrenkiella parvula HOM05D001822 ORTHO05D001744 1.6e-13 78.6 52 71.2
Aa31LG11G12470 Aethionema arabicum HOM05D001822 ORTHO05D001744 2.1e-13 78.2 52 73.1
Aa31LG5G13640 Aethionema arabicum HOM05D001822 ORTHO05D001744 2.1e-13 78.2 52 71.2
Carub.0003s0231 Capsella rubella HOM05D001822 ORTHO05D001744 2.1e-13 78.2 52 71.2
Cc07_g13340 Coffea canephora HOM05D001822 ORTHO05D001744 2.1e-13 78.2 52 75.0
Thhalv10021756m.g Eutrema salsugineum HOM05D001822 ORTHO05D001744 2.1e-13 78.2 52 71.2
Oeu036618.1 Olea europaea HOM05D001822 ORTHO05D001744 2.1e-13 78.2 52 76.9
Rhsim09G0038300 Rhododendron simsii HOM05D001822 ORTHO05D001744 2.1e-13 78.2 52 73.1
CAN.G525.10 Capsicum annuum HOM05D001822 ORTHO05D001744 2.7e-13 77.8 52 76.9
FvH4_4g33810 Fragaria vesca HOM05D001822 ORTHO05D001744 2.7e-13 77.8 51 74.5
FAN12G2787 Fragaria x ananassa HOM05D001822 ORTHO05D001744 2.7e-13 77.8 51 74.5
SGA_v2.0_scaffold115G32121 Striga asiatica HOM05D001822 ORTHO05D001744 2.7e-13 77.8 50 76.0
TPR.G32709 Trifolium pratense HOM05D001822 ORTHO05D001744 2.7e-13 77.8 52 75.0
Actinidia38443 Actinidia chinensis HOM05D001822 ORTHO05D001744 3.6e-13 77.4 52 75.0
Gohir.A03G117800 Gossypium hirsutum HOM05D001822 ORTHO05D001744 3.6e-13 77.4 52 73.1
Oeu030306.1 Olea europaea HOM05D001822 ORTHO05D001744 3.6e-13 77.4 52 75.0
Ah.02g127850 Amaranthus hybridus HOM05D001822 ORTHO05D001744 4.7e-13 77.0 52 73.1
AT3G03160 Arabidopsis thaliana HOM05D001822 ORTHO05D001744 4.7e-13 77.0 52 69.2
BcaB04g19373 Brassica carinata HOM05D001822 ORTHO05D001744 4.7e-13 77.0 52 69.2
A10p22200 Brassica napus HOM05D001822 ORTHO05D001744 4.7e-13 77.0 50 76.0
BraA10t44279Z Brassica rapa HOM05D001822 ORTHO05D001744 4.7e-13 77.0 50 76.0
Glyma.05G235300 Glycine max HOM05D001822 ORTHO05D001744 4.7e-13 77.0 52 71.2
Hma1.2p1_0158F.1_g070100 Hydrangea macrophylla HOM05D001822 ORTHO05D001744 4.7e-13 77.0 52 75.0
Nitab4.5_0000574g0080 Nicotiana tabacum HOM05D001822 ORTHO05D001744 4.7e-13 77.0 52 76.9
Nitab4.5_0008972g0010 Nicotiana tabacum HOM05D001822 ORTHO05D001744 4.7e-13 77.0 52 76.9
Rhsim08G0019200 Rhododendron simsii HOM05D001822 ORTHO05D001744 4.7e-13 77.0 52 75.0
SalBow5G0652 Salvia bowleyana HOM05D001822 ORTHO05D001744 4.7e-13 77.0 52 75.0
EL10Ac6g14153 Beta vulgaris HOM05D001822 ORTHO05D001744 6.1e-13 76.6 50 72.0
BcaC01g04405 Brassica carinata HOM05D001822 ORTHO05D001744 6.1e-13 76.6 52 69.2
BcaC01g04410 Brassica carinata HOM05D001822 ORTHO05D001744 6.1e-13 76.6 52 69.2
A03p33230 Brassica napus HOM05D001822 ORTHO05D001744 6.1e-13 76.6 52 69.2
A05p44030 Brassica napus HOM05D001822 ORTHO05D001744 6.1e-13 76.6 52 69.2
BraA03t12495Z Brassica rapa HOM05D001822 ORTHO05D001744 6.1e-13 76.6 52 69.2
BraSC90t46708Z Brassica rapa HOM05D001822 ORTHO05D001744 6.1e-13 76.6 52 69.2
Ca_17288_v3 Cicer arietinum L. HOM05D001822 ORTHO05D001744 6.1e-13 76.6 52 73.1
Sopen11g005770 Solanum pennellii HOM05D001822 ORTHO05D001744 8.0e-13 76.3 52 75.0
C03p40490 Brassica napus HOM05D001822 ORTHO05D001744 1.0e-12 75.9 52 69.2
BolC3t16313H Brassica oleracea HOM05D001822 ORTHO05D001744 1.0e-12 75.9 52 69.2
AUR62014159 Chenopodium quinoa HOM05D001822 ORTHO05D001744 1.0e-12 75.9 50 72.0
AUR62038502 Chenopodium quinoa HOM05D001822 ORTHO05D001744 1.0e-12 75.9 50 72.0
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 1.4e-12 75.5 51 76.5
CDE05G1427 Ceratophyllum demersum HOM05D001822 ORTHO05D001744 1.4e-12 75.5 52 71.2
Eucgr.B02953 Eucalyptus grandis HOM05D001822 ORTHO05D001744 1.4e-12 75.5 52 71.2
Lsat_1_v5_gn_3_55881 Lactuca sativa HOM05D001822 ORTHO05D001744 1.4e-12 75.5 50 74.0
HPP92_020324 Vanilla planifolia HOM05D001822 ORTHO05D001744 1.4e-12 75.5 52 73.1
CDE05G1410 Ceratophyllum demersum HOM05D001822 ORTHO05D001744 1.8e-12 75.1 52 71.2
RcHm_v2.0_Chr4g0443321 Rosa chinensis HOM05D001822 ORTHO05D001744 1.8e-12 75.1 51 72.5
Solyc11g011010.1 Solanum lycopersicum HOM05D001822 ORTHO05D001744 1.8e-12 75.1 52 75.0
PGSC0003DMG400015665 Solanum tuberosum HOM05D001822 ORTHO05D001744 1.8e-12 75.1 52 75.0
TWI77G0656 Tripterygium wilfordii HOM05D001822 ORTHO05D001744 1.8e-12 75.1 48 79.2
MSTRG.15664 Avicennia marina HOM05D001822 ORTHO05D001744 2.3e-12 74.7 52 73.1
BcaC05g30525 Brassica carinata HOM05D001822 ORTHO05D001744 2.3e-12 74.7 52 67.3
C05p63650 Brassica napus HOM05D001822 ORTHO05D001744 2.3e-12 74.7 52 67.3
BolC5t35034H Brassica oleracea HOM05D001822 ORTHO05D001744 2.3e-12 74.7 52 67.3
CsaV3_5G037070 Cucumis sativus L. HOM05D001822 ORTHO05D001744 2.3e-12 74.7 46 80.4
HPP92_020328 Vanilla planifolia HOM05D001822 ORTHO05D001744 2.3e-12 74.7 52 71.2
Sc09g0001670 Simmondsia chinensis HOM05D001822 ORTHO05D001744 3.0e-12 74.3 51 68.6
BcaC04g18824 Brassica carinata HOM05D001822 ORTHO05D001744 5.2e-12 73.6 50 72.0
BolC9t58836H Brassica oleracea HOM05D001822 ORTHO05D001744 5.2e-12 73.6 50 72.0
Dinv28189 Davidia involucrata HOM05D001822 ORTHO05D001744 5.2e-12 73.6 48 75.0
Hma1.2p1_0940F.1_g239610 Hydrangea macrophylla HOM05D001822 ORTHO05D001744 5.2e-12 73.6 48 70.8
HanXRQChr17g0567321 Helianthus annuus HOM05D001822 ORTHO05D001744 6.8e-12 73.2 49 71.4
Nitab4.5_0000201g0080 Nicotiana tabacum HOM05D001822 ORTHO05D001744 6.8e-12 73.2 52 73.1
Nitab4.5_0005102g0080 Nicotiana tabacum HOM05D001822 ORTHO05D001744 6.8e-12 73.2 52 73.1
Oeu032317.1 Olea europaea HOM05D001822 ORTHO05D001744 8.8e-12 72.8 46 76.1
Nn4g24312 Nelumbo nucifera HOM05D001822 ORTHO05D001744 1.2e-11 72.4 50 68.0
Oeu016284.1 Olea europaea HOM05D001822 ORTHO05D001744 1.2e-11 72.4 52 67.3
Sabra08G0102200 Salix brachista HOM05D001822 ORTHO05D001744 1.2e-11 72.4 48 75.0
Cfa019616 Carpinus fangiana HOM05D001822 ORTHO05D001744 1.5e-11 72.0 49 75.5
Haze_18863 Corylus avellana HOM05D001822 ORTHO05D001744 2.0e-11 71.6 48 77.1
Hma1.2p1_0471F.1_g159570 Hydrangea macrophylla HOM05D001822 ORTHO05D001744 2.0e-11 71.6 51 68.6
Cfa015004 Carpinus fangiana HOM05D001822 ORTHO05D001744 2.6e-11 71.2 45 75.6
CiPaw.06G050000 Carya illinoinensis HOM05D001822 ORTHO05D001744 2.6e-11 71.2 45 75.6
CiPaw.06G050100 Carya illinoinensis HOM05D001822 ORTHO05D001744 2.6e-11 71.2 45 75.6
Haze_10904 Corylus avellana HOM05D001822 ORTHO05D001744 2.6e-11 71.2 45 75.6
Haze_10909 Corylus avellana HOM05D001822 ORTHO05D001744 2.6e-11 71.2 45 75.6
CiPaw.15G145600 Carya illinoinensis HOM05D001822 ORTHO05D001744 4.4e-11 70.5 52 71.2
Zm00001eb253800 Zea mays HOM05D001822 ORTHO05D001744 4.4e-11 70.5 51 64.7
Os02g0734900 Oryza sativa ssp. japonica HOM05D001822 ORTHO05D001744 5.7e-11 70.1 51 64.7
Lsat_1_v5_gn_4_12780 Lactuca sativa HOM05D001822 ORTHO05D001744 1.7e-10 68.6 52 65.4
Dinv19041 Davidia involucrata HOM05D001822 ORTHO05D001744 2.2e-10 68.2 43 79.1
Zm00001eb190330 Zea mays HOM05D001822 ORTHO05D001744 2.2e-10 68.2 51 60.8
HanXRQChr12g0377801 Helianthus annuus HOM05D001822 ORTHO05D001744 2.8e-10 67.8 52 61.5
Migut.L00528 Erythranthe guttata HOM05D001822 ORTHO05D001744 3.7e-10 67.4 52 63.5
Migut.L00638 Erythranthe guttata HOM05D001822 ORTHO05D001744 3.7e-10 67.4 52 63.5
Potri.015G035400 Populus trichocarpa HOM05D001822 ORTHO05D001744 4.8e-10 67.0 46 69.6
C09p60010 Brassica napus HOM05D001822 ORTHO05D001744 8.3e-10 66.2 41 78.0
CSS0022368 Camellia sinensis var. sinensis HOM05D001822 ORTHO05D001744 8.3e-10 66.2 50 66.0
QL10p031259 Quercus lobata HOM05D001822 ORTHO05D001744 1.8e-09 65.1 45 71.1
HanXRQChr15g0476771 Helianthus annuus HOM05D001822 ORTHO05D001744 3.1e-09 64.3 52 67.3
Carub.0004s2157 Capsella rubella HOM05D001822 ORTHO05D001744 9.1e-09 62.8 46 63.0
Eucgr.G02113 Eucalyptus grandis HOM05D001822 ORTHO05D001744 1.6e-08 62.0 51 56.9
SEGI_21602 Sequoiadendron giganteum HOM05D001822 ORTHO05D001744 2.7e-08 61.2 48 56.2
Actinidia06490 Actinidia chinensis HOM05D001822 ORTHO05D001744 7.7e-08 59.7 42 73.8
MELO3C026427.2 Cucumis melo HOM05D001822 ORTHO05D001744 1.7e-07 58.5 37 75.7
MSTRG.909 Avicennia marina HOM05D001822 ORTHO05D001744 1.1e-06 55.8 50 56.0
Pp3c1_4930 Physcomitrium patens HOM05D001822 ORTHO05D001744 3.2e-06 54.3 51 49.0


User provided reference genes

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