Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 1.4e-185 652.9 341 100.0
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 3.8e-180 634.8 341 94.1
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 3.2e-179 631.7 341 93.8
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 5.0e-164 581.3 341 85.9
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 9.4e-163 577.0 341 86.8
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 2.7e-157 558.9 341 85.3
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 2.3e-132 476.1 265 86.0
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 7.3e-131 471.1 297 74.7
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 1.2e-130 470.3 299 74.9
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 8.1e-130 467.6 331 70.7
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 1.4e-129 466.8 330 70.3
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 3.4e-128 462.2 335 69.9
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 7.1e-126 454.5 341 65.7
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.7e-125 452.6 341 65.7
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 2.7e-125 452.6 332 66.6
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 2.7e-125 452.6 332 66.6
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 2.7e-125 452.6 334 66.8
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 2.3e-124 449.5 297 72.1
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 2.3e-124 449.5 296 71.6
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 1.5e-123 446.8 295 72.2
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 2.5e-123 446.0 340 67.1
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 4.3e-123 445.3 296 70.6
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 7.3e-123 444.5 331 65.0
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 9.6e-123 444.1 329 64.1
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 9.6e-123 444.1 329 64.1
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 9.6e-123 444.1 298 69.1
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 9.6e-123 444.1 321 66.7
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 1.2e-122 443.7 302 68.9
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 2.1e-122 443.0 298 69.8
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 2.8e-122 442.6 296 70.3
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 4.7e-122 441.8 295 70.5
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 4.7e-122 441.8 298 69.1
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 3.1e-121 439.1 338 64.5
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 3.1e-121 439.1 295 70.2
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 5.2e-121 438.3 299 69.6
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 8.9e-121 437.6 298 67.8
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 1.2e-120 437.2 298 69.8
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 1.5e-120 436.8 294 72.8
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 2.0e-120 436.4 332 64.5
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 2.6e-120 436.0 296 68.9
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 2.6e-120 436.0 339 65.5
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 3.4e-120 435.6 303 68.0
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 2.2e-119 433.0 302 66.9
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 8.4e-119 431.0 297 68.0
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 1.4e-118 430.3 296 68.2
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.9e-118 429.9 335 64.2
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 4.2e-118 428.7 348 61.8
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 5.4e-118 428.3 298 68.5
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 5.4e-118 428.3 294 69.7
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 1.6e-117 426.8 341 61.0
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 1.6e-117 426.8 302 65.2
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 3.5e-117 425.6 317 65.9
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 4.6e-117 425.2 341 61.0
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 6.0e-117 424.9 299 65.6
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 6.0e-117 424.9 302 67.2
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 7.8e-117 424.5 294 70.7
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.7e-116 423.3 294 70.4
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.3e-116 422.9 298 67.8
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 2.3e-116 422.9 294 69.4
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 3.9e-116 422.2 331 64.4
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 6.6e-116 421.4 298 66.8
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 1.5e-115 420.2 330 62.4
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.9e-115 419.9 296 66.6
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.9e-115 419.9 296 66.6
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 2.5e-115 419.5 339 60.8
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 4.3e-115 418.7 298 66.4
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 5.6e-115 418.3 295 70.2
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 9.6e-115 417.5 302 66.6
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 9.6e-115 417.5 302 66.6
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 9.6e-115 417.5 302 66.2
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.1e-114 416.4 298 67.1
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 2.8e-114 416.0 295 67.8
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 2.8e-114 416.0 295 68.1
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 3.6e-114 415.6 295 68.1
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 4.8e-114 415.2 302 66.2
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 4.8e-114 415.2 301 64.8
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 4.8e-114 415.2 301 67.1
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 4.8e-114 415.2 364 59.6
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 1.4e-113 413.7 379 55.7
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 1.8e-113 413.3 295 68.8
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 1.8e-113 413.3 295 68.8
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 1.8e-113 413.3 295 67.8
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 1.8e-113 413.3 334 60.5
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 4.0e-113 412.1 295 68.8
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 6.9e-113 411.4 310 66.8
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 3.4e-112 409.1 309 66.3
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 4.4e-112 408.7 349 57.9
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 9.9e-112 407.5 296 68.2
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 1.7e-111 406.8 309 64.7
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 3.8e-111 405.6 295 66.4
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 2.4e-110 402.9 295 64.4
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.4e-110 402.9 295 64.7
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.4e-110 402.9 295 64.7
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 3.2e-110 402.5 298 65.1
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 5.4e-110 401.7 289 65.4
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 9.3e-110 401.0 295 65.4
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.1e-109 399.8 295 64.1
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 2.7e-109 399.4 297 64.3
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.9e-108 395.6 294 67.7
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 4.3e-107 392.1 299 61.2
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 9.6e-107 391.0 294 66.7
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 1.6e-106 390.2 303 64.7
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.6e-106 390.2 296 61.5
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.2e-103 379.8 289 63.7
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.8e-103 379.0 289 63.7
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 4.9e-103 378.6 289 63.7
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 4.6e-101 372.1 342 57.9
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 4.6e-101 372.1 295 60.7
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 4.3e-99 365.5 305 59.3
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 3.7e-98 362.5 296 58.1
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.4e-97 359.8 298 59.4
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 2.4e-97 359.8 331 51.1
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 4.3e-91 339.0 272 61.0
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 5.7e-91 338.6 252 71.0
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 1.6e-90 337.0 295 57.6
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 3.1e-89 332.8 290 53.8
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.3e-87 327.4 309 51.5
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 2.5e-83 313.2 253 58.9
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 5.3e-81 305.4 312 56.1
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.4e-78 297.4 305 47.5
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 2.6e-75 286.6 355 43.7
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 3.3e-75 286.2 297 46.1
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 2.0e-72 276.9 296 45.3
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 1.1e-70 271.2 299 45.2
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 7.2e-70 268.5 298 44.0
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 9.4e-70 268.1 270 52.2
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.0e-67 260.4 200 64.0
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 4.2e-62 242.7 265 44.5
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 7.2e-62 241.9 163 67.5
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 9.4e-62 241.5 202 60.9
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 1.5e-51 207.6 173 56.1
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 5.4e-49 199.1 229 46.3
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 2.0e-40 170.6 285 34.7
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 1.0e-36 158.3 84 85.7
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.3e-34 151.4 118 57.6
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 1.3e-34 151.4 115 69.6
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 3.1e-28 130.2 91 62.6
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 4.4e-27 126.3 102 60.8
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 4.9e-26 122.9 120 53.3
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 6.4e-26 122.5 92 59.8
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 6.4e-26 122.5 92 59.8
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 8.3e-26 122.1 73 74.0
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 3.2e-25 120.2 68 76.5
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 8.6e-23 112.1 87 57.5
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 3.3e-22 110.2 70 70.0
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 1.2e-21 108.2 77 62.3
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 1.8e-20 104.4 88 53.4
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 8.3e-18 95.5 177 35.6
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 5.1e-15 86.3 63 61.9
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 9.5e-14 82.0 52 67.3
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 9.5e-14 82.0 58 63.8
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 3.4e-11 73.6 85 48.2
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 1.1e-09 68.6 47 66.0
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.9e-09 67.8 62 51.6
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.2e-08 65.1 91 36.3
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 2.1e-08 64.3 51 54.9


User provided reference genes

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