Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400029388 Solanum tuberosum HOM05D007010 ORTHO05D008591 1.4e-63 246.1 129 100.0
Solyc12g095940.1 Solanum lycopersicum HOM05D007010 ORTHO05D008591 9.7e-60 233.4 129 94.6
Sopen12g031840 Solanum pennellii HOM05D007010 ORTHO05D008591 8.2e-59 230.3 129 93.8
CAN.G208.75 Capsicum annuum HOM05D007010 ORTHO05D008591 2.7e-38 162.2 131 71.0
Nitab4.5_0011306g0020 Nicotiana tabacum HOM05D007010 ORTHO05D008591 1.2e-28 130.2 119 67.2
Nitab4.5_0000738g0150 Nicotiana tabacum HOM05D007010 ORTHO05D008591 3.7e-27 125.2 119 63.9
Oeu037327.1 Olea europaea HOM05D007010 ORTHO05D008591 5.0e-24 114.8 136 52.9
Thecc.09G051700 Theobroma cacao HOM05D007010 ORTHO05D008591 8.6e-24 114.0 136 50.7
Oeu018653.1 Olea europaea HOM05D007010 ORTHO05D008591 3.6e-22 108.6 106 55.7
Potri.018G056000 Populus trichocarpa HOM05D007010 ORTHO05D008591 2.3e-21 105.9 133 51.1
Gohir.A06G087901 Gossypium hirsutum HOM05D007010 ORTHO05D008591 4.0e-21 105.1 128 48.4
Ciclev10009901m.g Citrus clementina HOM05D007010 ORTHO05D008591 2.6e-20 102.4 131 51.9
Sed0004842 Sechium edule HOM05D007010 ORTHO05D008591 9.8e-20 100.5 95 60.0
TAR383G0702 Trochodendron aralioides HOM05D007010 ORTHO05D008591 9.8e-20 100.5 129 46.5
Hma1.2p1_0450F.1_g155640 Hydrangea macrophylla HOM05D007010 ORTHO05D008591 1.3e-19 100.1 133 48.1
SalBow7G3522 Salvia bowleyana HOM05D007010 ORTHO05D008591 1.7e-19 99.8 133 47.4
Lj7P280T30 Lonicera japonica HOM05D007010 ORTHO05D008591 2.2e-19 99.4 132 47.7
SGA_v2.0_scaffold52G19071 Striga asiatica HOM05D007010 ORTHO05D008591 2.2e-19 99.4 135 48.9
CsaV3_4G035530 Cucumis sativus L. HOM05D007010 ORTHO05D008591 2.9e-19 99.0 143 45.5
ECA240G3686 Erigeron canadensis HOM05D007010 ORTHO05D008591 3.7e-19 98.6 148 47.3
TWI63G1421 Tripterygium wilfordii HOM05D007010 ORTHO05D008591 4.9e-19 98.2 124 46.0
Medtr4g088585 Medicago truncatula HOM05D007010 ORTHO05D008591 8.3e-19 97.4 129 47.3
SalBow2G0398 Salvia bowleyana HOM05D007010 ORTHO05D008591 1.1e-18 97.1 134 47.8
SalBow2G1284 Salvia bowleyana HOM05D007010 ORTHO05D008591 1.1e-18 97.1 134 47.8
Gohir.D06G088700 Gossypium hirsutum HOM05D007010 ORTHO05D008591 2.4e-18 95.9 128 45.3
Nn8g38932 Nelumbo nucifera HOM05D007010 ORTHO05D008591 3.2e-18 95.5 119 47.9
Nn8g38936 Nelumbo nucifera HOM05D007010 ORTHO05D008591 3.2e-18 95.5 119 47.9
Migut.L00284 Erythranthe guttata HOM05D007010 ORTHO05D008591 4.1e-18 95.1 158 43.0
Lalb_Chr05g0218511 Lupinus albus HOM05D007010 ORTHO05D008591 5.4e-18 94.7 125 46.4
Psat7g115760 Pisum sativum HOM05D007010 ORTHO05D008591 5.4e-18 94.7 113 48.7
Lsat_1_v5_gn_9_89520 Lactuca sativa HOM05D007010 ORTHO05D008591 9.2e-18 94.0 139 47.5
Cpa.g.sc7.196 Carica papaya HOM05D007010 ORTHO05D008591 1.6e-17 93.2 131 47.3
Sp6g31840 Schrenkiella parvula HOM05D007010 ORTHO05D008591 1.6e-17 93.2 135 45.2
TAR497G0007 Trochodendron aralioides HOM05D007010 ORTHO05D008591 2.0e-17 92.8 115 50.4
Potri.006G232200 Populus trichocarpa HOM05D007010 ORTHO05D008591 2.7e-17 92.4 151 41.7
THA.LOC104811249 Tarenaya hassleriana HOM05D007010 ORTHO05D008591 2.7e-17 92.4 135 43.7
HanXRQChr13g0410661 Helianthus annuus HOM05D007010 ORTHO05D008591 3.5e-17 92.0 140 45.7
Sp7g31830 Schrenkiella parvula HOM05D007010 ORTHO05D008591 5.9e-17 91.3 126 45.2
Mapoly0094s0032 Marchantia polymorpha HOM05D007010 ORTHO05D008591 2.3e-16 89.4 106 49.1
TPR.G16317 Trifolium pratense HOM05D007010 ORTHO05D008591 2.3e-16 89.4 131 44.3
Duzib168G1521 Durio zibethinus HOM05D007010 ORTHO05D008591 3.0e-16 89.0 98 50.0
QL05p000846 Quercus lobata HOM05D007010 ORTHO05D008591 3.0e-16 89.0 94 54.3
QL05p001142 Quercus lobata HOM05D007010 ORTHO05D008591 3.0e-16 89.0 92 55.4
Glyma.07G198700 Glycine max HOM05D007010 ORTHO05D008591 8.6e-16 87.4 132 46.2
ClCG05G017750 Citrullus lanatus HOM05D007010 ORTHO05D008591 1.1e-15 87.0 98 56.1
Atru.chr1.3280 Acer truncatum HOM05D007010 ORTHO05D008591 1.5e-15 86.7 135 42.2
Nn8g38933 Nelumbo nucifera HOM05D007010 ORTHO05D008591 1.5e-15 86.7 114 46.5
Ca_18571_v3 Cicer arietinum L. HOM05D007010 ORTHO05D008591 1.9e-15 86.3 127 44.9
vmacro00158 Vaccinium macrocarpon HOM05D007010 ORTHO05D008591 4.3e-15 85.1 117 48.7
Eucgr.C02362 Eucalyptus grandis HOM05D007010 ORTHO05D008591 5.6e-15 84.7 129 44.2
Manes.03G046700 Manihot esculenta HOM05D007010 ORTHO05D008591 5.6e-15 84.7 144 39.6
Lj5g0011556 Lotus japonicus HOM05D007010 ORTHO05D008591 7.3e-15 84.3 126 46.0
Pp3c2_14930 Physcomitrium patens HOM05D007010 ORTHO05D008591 7.3e-15 84.3 132 43.2
Hund03353 Selenicereus undatus HOM05D007010 ORTHO05D008591 7.3e-15 84.3 129 43.4
CANSAT56G1710 Cannabis sativa HOM05D007010 ORTHO05D008591 9.5e-15 84.0 117 47.0
FvH4_2g32140 Fragaria vesca HOM05D007010 ORTHO05D008591 1.2e-14 83.6 137 43.1
Haze_03853 Corylus avellana HOM05D007010 ORTHO05D008591 1.6e-14 83.2 94 50.0
Phvul.002G230000 Phaseolus vulgaris HOM05D007010 ORTHO05D008591 1.6e-14 83.2 129 41.9
FAN24G3148 Fragaria x ananassa HOM05D007010 ORTHO05D008591 2.1e-14 82.8 137 43.1
Sc09g0009690 Simmondsia chinensis HOM05D007010 ORTHO05D008591 2.1e-14 82.8 136 44.9
Rhsim11G0045900 Rhododendron simsii HOM05D007010 ORTHO05D008591 3.6e-14 82.0 120 45.8
Lj4g0022512 Lotus japonicus HOM05D007010 ORTHO05D008591 4.7e-14 81.6 123 43.9
Thhalv10027214m.g Eutrema salsugineum HOM05D007010 ORTHO05D008591 1.4e-13 80.1 111 43.2
Dinv27969 Davidia involucrata HOM05D007010 ORTHO05D008591 4.0e-13 78.6 117 47.9
Glyma.13G177700 Glycine max HOM05D007010 ORTHO05D008591 5.2e-13 78.2 128 43.8
Prupe.1G414500 Prunus persica HOM05D007010 ORTHO05D008591 6.8e-13 77.8 173 34.7
Aa31LG3G15440 Aethionema arabicum HOM05D007010 ORTHO05D008591 8.9e-13 77.4 137 40.1
ATR0697G019 Amborella trichopoda HOM05D007010 ORTHO05D008591 1.2e-12 77.0 143 38.5
MD15G1061800 Malus domestica HOM05D007010 ORTHO05D008591 1.5e-12 76.6 159 35.8
VMungo0251G3434 Vigna mungo HOM05D007010 ORTHO05D008591 2.0e-12 76.3 134 40.3
Atru.chr7.2115 Acer truncatum HOM05D007010 ORTHO05D008591 3.4e-12 75.5 130 41.5
FAN27G2071 Fragaria x ananassa HOM05D007010 ORTHO05D008591 9.8e-12 73.9 130 41.5
Sabra06G0180800 Salix brachista HOM05D007010 ORTHO05D008591 1.7e-11 73.2 130 40.0
Gorai.010G102500 Gossypium raimondii HOM05D007010 ORTHO05D008591 2.2e-11 72.8 114 42.1
BcaB03g11855 Brassica carinata HOM05D007010 ORTHO05D008591 2.9e-11 72.4 141 35.5
CARHR201450 Cardamine hirsuta HOM05D007010 ORTHO05D008591 2.9e-11 72.4 152 32.9
Thhalv10014970m.g Eutrema salsugineum HOM05D007010 ORTHO05D008591 2.9e-11 72.4 149 34.9
Sabra06G0180200 Salix brachista HOM05D007010 ORTHO05D008591 3.7e-11 72.0 116 43.1
Dinv23425 Davidia involucrata HOM05D000575 ORTHO05D004448 4.9e-11 71.6 118 44.9
MD08G1044600 Malus domestica HOM05D007010 ORTHO05D008591 4.9e-11 71.6 161 36.6
AL6G22510 Arabidopsis lyrata HOM05D007010 ORTHO05D008591 8.3e-11 70.9 114 40.4
MBI06_g20720_MAGBIO Magnolia biondii HOM05D007010 ORTHO05D008591 1.4e-10 70.1 143 39.2
Aqoxy3G02885 Aquilegia oxysepala HOM05D007010 ORTHO05D008591 2.4e-10 69.3 68 52.9
PSO478G3947 Papaver somniferum HOM05D007010 ORTHO05D008591 2.4e-10 69.3 116 41.4
FAN20G1932 Fragaria x ananassa HOM05D007010 ORTHO05D008591 1.6e-09 66.6 128 39.1
RcHm_v2.0_Chr6g0310541 Rosa chinensis HOM05D007010 ORTHO05D008591 1.6e-09 66.6 50 56.0
BcaC01g00931 Brassica carinata HOM05D007010 ORTHO05D008591 2.0e-09 66.2 157 34.4
C03p86090 Brassica napus HOM05D007010 ORTHO05D008591 2.0e-09 66.2 157 34.4
BolC3t20897H Brassica oleracea HOM05D007010 ORTHO05D008591 2.0e-09 66.2 157 34.4
SEGI_19332 Sequoiadendron giganteum HOM05D007010 ORTHO05D008591 3.5e-09 65.5 102 40.2
Cre09.g395325 Chlamydomonas reinhardtii HOM05D007010 ORTHO05D008591 6.0e-09 64.7 91 39.6
SGA_v2.0_scaffold269G46243 Striga asiatica HOM05D007010 ORTHO05D008591 7.8e-09 64.3 121 41.3
PGR044G1826 Punica granatum HOM05D007010 ORTHO05D008591 2.3e-08 62.8 150 36.7
AT5G11760 Arabidopsis thaliana HOM05D007010 ORTHO05D008591 3.0e-08 62.4 164 33.5
A08p17130 Brassica napus HOM05D007010 ORTHO05D008591 5.0e-08 61.6 162 32.1
AUR62009172 Chenopodium quinoa HOM05D007010 ORTHO05D008591 1.1e-07 60.5 91 41.8
Zm00001eb054150 Zea mays HOM05D007010 ORTHO05D008591 1.5e-07 60.1 112 35.7
Aa31LG8G6820 Aethionema arabicum HOM05D007010 ORTHO05D008591 2.5e-07 59.3 116 36.2
CBR_g70706 Chara braunii HOM05D007010 ORTHO05D008591 2.5e-07 59.3 113 39.8
BraA08t33674Z Brassica rapa HOM05D007010 ORTHO05D008591 4.3e-07 58.5 145 33.1
Cfa017938 Carpinus fangiana HOM05D007010 ORTHO05D008591 7.3e-07 57.8 129 33.3
CiPaw.15G041400 Carya illinoinensis HOM05D007010 ORTHO05D008591 9.5e-07 57.4 117 40.2
Carub.0006s1029 Capsella rubella HOM05D007010 ORTHO05D008591 3.6e-06 55.5 163 30.1
FAN10G4050 Fragaria x ananassa HOM05D007010 ORTHO05D008591 4.7e-06 55.1 36 58.3


User provided reference genes

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