Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 3.8e-63 245.0 153 100.0
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 4.8e-58 228.0 155 87.7
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 1.1e-54 216.9 147 88.4
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 8.3e-50 200.7 153 82.4
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 1.5e-46 189.9 148 79.1
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 7.2e-46 187.6 143 80.4
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 8.0e-45 184.1 147 78.9
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 7.5e-43 177.6 151 68.9
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 1.7e-42 176.4 143 77.6
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 1.7e-42 176.4 143 77.6
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 2.2e-42 176.0 145 76.6
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.8e-42 175.6 147 76.9
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 2.8e-42 175.6 143 81.1
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 2.8e-42 175.6 143 77.6
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 4.9e-42 174.9 142 76.8
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 9.2e-41 170.6 144 71.5
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 1.2e-40 170.2 138 75.4
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 3.5e-40 168.7 144 71.5
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 3.5e-40 168.7 146 71.2
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 1.3e-39 166.8 138 73.2
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 1.3e-39 166.8 137 75.2
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.7e-39 166.4 145 73.1
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.7e-39 166.4 144 69.4
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 3.8e-39 165.2 141 72.3
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 6.6e-39 164.5 141 56.0
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 8.6e-39 164.1 138 74.6
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 1.1e-38 163.7 144 77.8
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 2.5e-38 162.5 144 77.1
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 2.5e-38 162.5 138 78.3
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 3.3e-38 162.2 143 74.1
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 1.2e-37 160.2 143 68.5
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 1.2e-37 160.2 142 59.9
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 1.2e-37 160.2 150 55.3
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.2e-37 160.2 142 59.9
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.2e-37 160.2 150 55.3
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.2e-37 160.2 142 59.9
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 1.2e-37 160.2 146 60.3
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 2.8e-37 159.1 150 54.7
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.8e-37 159.1 150 54.7
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 8.0e-37 157.5 138 71.7
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.0e-36 157.1 146 58.2
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 1.4e-36 156.8 138 71.7
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 1.8e-36 156.4 146 58.9
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 2.3e-36 156.0 138 73.2
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 6.8e-36 154.5 146 71.9
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 1.2e-35 153.7 138 73.9
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 1.2e-35 153.7 143 71.3
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.2e-35 153.7 153 76.5
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 1.5e-35 153.3 150 53.3
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 2.0e-35 152.9 146 66.4
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 7.5e-35 151.0 140 73.6
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 9.8e-35 150.6 143 74.8
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 1.7e-34 149.8 145 70.3
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 2.2e-34 149.4 139 68.3
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 2.2e-34 149.4 139 68.3
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 2.2e-34 149.4 139 68.3
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 2.2e-34 149.4 139 68.3
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 2.2e-34 149.4 139 68.3
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 2.2e-34 149.4 138 58.7
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 6.4e-34 147.9 146 55.5
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 1.1e-33 147.1 138 76.8
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 1.1e-33 147.1 145 57.9
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 1.4e-33 146.7 142 62.0
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.8e-33 146.4 138 73.9
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.8e-33 146.4 138 73.9
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 1.8e-33 146.4 138 73.9
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 2.4e-33 146.0 139 69.1
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 3.2e-33 145.6 146 69.2
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 3.2e-33 145.6 138 73.9
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 4.1e-33 145.2 139 66.9
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 5.4e-33 144.8 137 58.4
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 7.0e-33 144.4 143 51.0
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 9.2e-33 144.1 143 70.6
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 1.2e-32 143.7 137 57.7
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 1.6e-32 143.3 138 73.9
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.6e-32 143.3 140 66.4
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 3.5e-32 142.1 136 66.9
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 3.5e-32 142.1 148 70.9
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 4.6e-32 141.7 142 71.8
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 4.6e-32 141.7 142 65.5
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 5.9e-32 141.4 139 66.9
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 5.9e-32 141.4 137 71.5
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 7.8e-32 141.0 136 66.9
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.0e-31 140.6 141 70.2
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.0e-31 140.6 141 72.3
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 1.0e-31 140.6 139 70.5
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 1.3e-31 140.2 146 69.2
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 1.3e-31 140.2 146 69.2
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.7e-31 139.8 138 71.0
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 2.3e-31 139.4 138 71.7
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 2.3e-31 139.4 112 83.0
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 3.0e-31 139.0 141 70.2
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 3.0e-31 139.0 141 68.8
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 3.0e-31 139.0 126 72.2
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 5.0e-31 138.3 138 72.5
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 5.0e-31 138.3 138 72.5
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 6.6e-31 137.9 150 52.7
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 6.6e-31 137.9 138 72.5
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 6.6e-31 137.9 142 68.3
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 6.6e-31 137.9 138 72.5
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 1.5e-30 136.7 139 72.7
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 2.5e-30 136.0 205 38.5
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 2.5e-30 136.0 144 68.8
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 3.3e-30 135.6 142 69.7
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 3.3e-30 135.6 137 70.1
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 5.6e-30 134.8 138 72.5
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 7.3e-30 134.4 141 70.2
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 9.5e-30 134.0 139 67.6
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 1.6e-29 133.3 138 70.3
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 2.1e-29 132.9 143 54.5
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 2.1e-29 132.9 139 64.7
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 2.8e-29 132.5 138 70.3
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 3.6e-29 132.1 141 52.5
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 3.6e-29 132.1 141 71.6
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 6.2e-29 131.3 126 67.5
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 6.2e-29 131.3 145 67.6
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 1.4e-28 130.2 138 71.0
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 1.8e-28 129.8 143 68.5
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 2.3e-28 129.4 145 66.2
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 2.3e-28 129.4 143 68.5
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 4.0e-28 128.6 144 68.8
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 8.9e-28 127.5 144 50.7
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.2e-27 127.1 150 49.3
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 3.4e-27 125.6 141 68.1
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 2.2e-26 122.9 139 69.1
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 2.9e-26 122.5 144 65.3
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 2.9e-26 122.5 144 65.3
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 2.9e-26 122.5 144 65.3
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 3.7e-26 122.1 144 64.6
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 1.4e-25 120.2 144 66.7
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 2.4e-25 119.4 139 67.6
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 3.2e-25 119.0 143 67.1
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 5.4e-25 118.2 139 66.2
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 7.0e-25 117.9 132 69.7
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 7.0e-25 117.9 132 69.7
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 4.6e-24 115.2 143 64.3
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 7.8e-24 114.4 72 69.4
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 1.3e-23 113.6 130 68.5
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 3.3e-22 109.0 120 53.3
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 8.1e-21 104.4 108 45.4
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 8.1e-21 104.4 78 60.3
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 1.2e-19 100.5 119 51.3
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 1.4e-17 93.6 57 71.9
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 2.4e-17 92.8 52 80.8
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 5.4e-17 91.7 127 46.5
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 1.2e-16 90.5 111 52.3
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 4.6e-16 88.6 148 41.9
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 1.1e-14 84.0 79 84.8
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 9.5e-14 80.9 110 48.2
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 2.9e-10 69.3 76 80.3


User provided reference genes

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