Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400029290 Solanum tuberosum HOM05D006755 ORTHO05D008472 2.7e-128 462.6 355 100.0
Nitab4.5_0000943g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 2.4e-100 369.8 355 82.0
Nitab4.5_0009982g0010 Nicotiana tabacum HOM05D006755 ORTHO05D008472 2.4e-100 369.8 352 81.5
Solyc12g096140.3 Solanum lycopersicum HOM05D006755 ORTHO05D008472 4.5e-99 365.5 357 83.5
Sopen12g032020 Solanum pennellii HOM05D006755 ORTHO05D008472 5.9e-99 365.2 357 83.5
CAN.G947.37 Capsicum annuum HOM05D006755 ORTHO05D008472 1.9e-97 360.1 354 80.5
Peaxi162Scf00876g00046 Petunia axillaris HOM05D006755 ORTHO05D008472 7.4e-94 348.2 357 78.4
Nitab4.5_0002859g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 4.8e-93 345.5 355 79.2
Peaxi162Scf00193g00005 Petunia axillaris HOM05D006755 ORTHO05D008472 1.7e-69 267.3 360 70.0
Nitab4.5_0001968g0030 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.6e-51 207.6 226 88.9
Cc08_g09000 Coffea canephora HOM05D006755 ORTHO05D008472 8.1e-48 195.3 347 54.2
Migut.E01827 Erythranthe guttata HOM05D006755 ORTHO05D008472 1.8e-47 194.1 332 62.3
Oeu033356.1 Olea europaea HOM05D006755 ORTHO05D008472 4.4e-46 189.5 321 66.0
MSTRG.1737 Avicennia marina HOM05D006755 ORTHO05D008472 1.9e-44 184.1 314 68.2
SGA_v2.0_scaffold21G09644 Striga asiatica HOM05D006755 ORTHO05D008472 3.5e-43 179.9 296 67.2
Dinv41852 Davidia involucrata HOM05D006755 ORTHO05D008472 3.6e-40 169.9 299 66.9
Lj9P409T68 Lonicera japonica HOM05D006755 ORTHO05D008472 6.2e-40 169.1 313 64.5
Thecc.02G149300 Theobroma cacao HOM05D006755 ORTHO05D008472 8.1e-40 168.7 292 63.4
PGR142G2394 Punica granatum HOM05D006755 ORTHO05D008472 1.1e-39 168.3 356 57.0
CSS0044736 Camellia sinensis var. sinensis HOM05D006755 ORTHO05D008472 2.3e-39 167.2 227 80.6
Rhsim12G0052500 Rhododendron simsii HOM05D006755 ORTHO05D008472 3.1e-39 166.8 295 66.1
CANSAT25G1067 Cannabis sativa HOM05D006755 ORTHO05D008472 5.2e-39 166.0 347 57.6
CANSAT25G1651 Cannabis sativa HOM05D006755 ORTHO05D008472 6.8e-39 165.6 347 57.9
Gohir.D13G058100 Gossypium hirsutum HOM05D006755 ORTHO05D008472 6.8e-39 165.6 233 78.5
Psat2g160920 Pisum sativum HOM05D006755 ORTHO05D008472 2.0e-38 164.1 256 70.3
arahy.Tifrunner.gnm1.ann1.HWJ5MG Arachis hypogaea HOM05D006755 ORTHO05D008472 3.4e-38 163.3 324 60.2
Gorai.013G065500 Gossypium raimondii HOM05D006755 ORTHO05D008472 4.4e-38 162.9 289 66.4
arahy.Tifrunner.gnm1.ann1.0IBU2N Arachis hypogaea HOM05D006755 ORTHO05D008472 9.9e-38 161.8 321 60.7
Gohir.A13G063800 Gossypium hirsutum HOM05D006755 ORTHO05D008472 2.9e-37 160.2 233 58.8
Glyma.11G065700 Glycine max HOM05D006755 ORTHO05D008472 3.7e-37 159.8 232 72.4
TAR376G0479 Trochodendron aralioides HOM05D006755 ORTHO05D008472 1.1e-36 158.3 339 58.4
Eucgr.I01549 Eucalyptus grandis HOM05D006755 ORTHO05D008472 1.9e-36 157.5 303 63.4
Duzib052G1107 Durio zibethinus HOM05D006755 ORTHO05D008472 3.2e-36 156.8 292 62.7
Hma1.2p1_0052F.1_g030470 Hydrangea macrophylla HOM05D006755 ORTHO05D008472 7.1e-36 155.6 396 52.3
COL.COLO4_04807 Corchorus olitorius HOM05D006755 ORTHO05D008472 4.6e-35 152.9 288 60.8
Manes.15G113000 Manihot esculenta HOM05D006755 ORTHO05D008472 4.6e-35 152.9 313 61.3
Aqoxy4G02640 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 7.8e-35 152.1 261 70.1
DCAR_025005 Daucus carota HOM05D006755 ORTHO05D008472 7.8e-35 152.1 324 60.5
Ca_00389_v3 Cicer arietinum L. HOM05D006755 ORTHO05D008472 1.3e-34 151.4 235 75.3
Lj2g0006557 Lotus japonicus HOM05D006755 ORTHO05D008472 1.7e-34 151.0 298 60.4
Nn6g31560 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.7e-34 151.0 354 55.1
Duzib132G0679 Durio zibethinus HOM05D006755 ORTHO05D008472 2.3e-34 150.6 322 58.1
Ciclev10028759m.g Citrus clementina HOM05D006755 ORTHO05D008472 1.5e-33 147.9 314 60.8
Glyma.01G176900 Glycine max HOM05D006755 ORTHO05D008472 1.9e-33 147.5 336 54.8
TPR.G18806 Trifolium pratense HOM05D006755 ORTHO05D008472 2.5e-33 147.1 335 56.7
Phvul.002G027800 Phaseolus vulgaris HOM05D006755 ORTHO05D008472 3.3e-33 146.7 333 57.1
Carub.0007s0004 Capsella rubella HOM05D006755 ORTHO05D008472 4.3e-33 146.4 293 61.8
CDE02G4616 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 4.3e-33 146.4 210 78.6
ECA233G3571 Erigeron canadensis HOM05D006755 ORTHO05D008472 4.3e-33 146.4 261 60.9
VMungo1215G0649 Vigna mungo HOM05D006755 ORTHO05D008472 4.3e-33 146.4 335 56.7
Aqoxy6G03058 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 5.6e-33 146.0 227 74.9
Lalb_Chr09g0322551 Lupinus albus HOM05D006755 ORTHO05D008472 5.6e-33 146.0 316 56.6
CDE04G3036 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 9.6e-33 145.2 224 77.2
HPP92_025325 Vanilla planifolia HOM05D006755 ORTHO05D008472 9.6e-33 145.2 240 72.9
Aa31LG6G16930 Aethionema arabicum HOM05D006755 ORTHO05D008472 2.1e-32 144.1 317 54.3
Lsat_1_v5_gn_6_28960 Lactuca sativa HOM05D006755 ORTHO05D008472 3.6e-32 143.3 237 70.9
QL11p057006 Quercus lobata HOM05D006755 ORTHO05D008472 3.6e-32 143.3 295 56.9
HanXRQChr07g0186241 Helianthus annuus HOM05D006755 ORTHO05D008472 4.7e-32 142.9 250 63.2
Prupe.8G183200 Prunus persica HOM05D006755 ORTHO05D008472 4.7e-32 142.9 325 60.6
Sp7g37600 Schrenkiella parvula HOM05D006755 ORTHO05D008472 6.2e-32 142.5 318 57.5
EL10Ac9g21570 Beta vulgaris HOM05D006755 ORTHO05D008472 1.1e-31 141.7 255 69.0
Os01g0546500 Oryza sativa ssp. japonica HOM05D006755 ORTHO05D008472 1.4e-31 141.4 210 75.2
AUR62010217 Chenopodium quinoa HOM05D006755 ORTHO05D008472 1.8e-31 141.0 254 70.1
Sc18g0006850 Simmondsia chinensis HOM05D006755 ORTHO05D008472 1.8e-31 141.0 312 61.5
Actinidia26119 Actinidia chinensis HOM05D006755 ORTHO05D008472 2.4e-31 140.6 186 83.9
AL7G10050 Arabidopsis lyrata HOM05D006755 ORTHO05D008472 4.0e-31 139.8 299 57.2
Medtr8g098445 Medicago truncatula HOM05D006755 ORTHO05D008472 4.0e-31 139.8 231 71.4
PSO541G3341 Papaver somniferum HOM05D006755 ORTHO05D008472 4.0e-31 139.8 280 47.9
HPP92_007220 Vanilla planifolia HOM05D006755 ORTHO05D008472 5.2e-31 139.4 337 55.5
CARHR293910 Cardamine hirsuta HOM05D006755 ORTHO05D008472 6.8e-31 139.0 325 56.3
CiPaw.06G113100 Carya illinoinensis HOM05D006755 ORTHO05D008472 2.6e-30 137.1 295 58.0
Thhalv10005467m.g Eutrema salsugineum HOM05D006755 ORTHO05D008472 4.4e-30 136.3 314 58.0
Ah.01g010520 Amaranthus hybridus HOM05D006755 ORTHO05D008472 7.6e-30 135.6 260 66.9
Zm00001eb342190 Zea mays HOM05D006755 ORTHO05D008472 7.6e-30 135.6 267 59.9
vmacro08131 Vaccinium macrocarpon HOM05D006755 ORTHO05D008472 9.9e-30 135.2 184 85.3
BraA06t27405Z Brassica rapa HOM05D006755 ORTHO05D008472 2.2e-29 134.0 292 60.3
PSO675G0405 Papaver somniferum HOM05D006755 ORTHO05D008472 2.2e-29 134.0 281 47.0
TWI75G0077 Tripterygium wilfordii HOM05D006755 ORTHO05D008472 2.2e-29 134.0 319 57.4
Lj2g0026453 Lotus japonicus HOM05D006755 ORTHO05D008472 3.8e-29 133.3 315 59.0
BcaC06g34295 Brassica carinata HOM05D006755 ORTHO05D008472 4.9e-29 132.9 302 59.3
Medtr5g019860 Medicago truncatula HOM05D006755 ORTHO05D008472 6.4e-29 132.5 234 69.7
BolC7t43606H Brassica oleracea HOM05D006755 ORTHO05D008472 8.4e-29 132.1 302 58.6
CsaV3_7G002250 Cucumis sativus L. HOM05D006755 ORTHO05D008472 1.1e-28 131.7 231 72.3
C07p30650 Brassica napus HOM05D006755 ORTHO05D008472 1.4e-28 131.3 302 58.9
MD05G1145100 Malus domestica HOM05D006755 ORTHO05D008472 3.2e-28 130.2 318 59.4
AT4G38150 Arabidopsis thaliana HOM05D006755 ORTHO05D008472 4.2e-28 129.8 190 45.8
BcaC06g31423 Brassica carinata HOM05D006755 ORTHO05D008472 5.4e-28 129.4 292 54.5
A06p45360 Brassica napus HOM05D006755 ORTHO05D008472 7.1e-28 129.0 292 59.6
Sed0010179 Sechium edule HOM05D006755 ORTHO05D008472 7.1e-28 129.0 224 72.8
AUR62013213 Chenopodium quinoa HOM05D006755 ORTHO05D008472 1.2e-27 128.3 247 68.0
SHI05798 Sapria himalayana HOM05D006755 ORTHO05D008472 1.2e-27 128.3 182 79.1
Cfa005407 Carpinus fangiana HOM05D006755 ORTHO05D008472 1.6e-27 127.9 302 54.6
THA.LOC104823440 Tarenaya hassleriana HOM05D006755 ORTHO05D008472 1.6e-27 127.9 323 52.6
Sabra04G0141300 Salix brachista HOM05D006755 ORTHO05D008472 3.9e-26 123.2 358 55.3
MELO3C024165.2 Cucumis melo HOM05D006755 ORTHO05D008472 6.6e-26 122.5 322 56.5
SalBow1G4250 Salvia bowleyana HOM05D006755 ORTHO05D008472 8.1e-24 115.5 262 46.9
Nn1g06229 Nelumbo nucifera HOM05D006755 ORTHO05D008472 5.3e-23 112.8 113 57.5
Nn3g19301 Nelumbo nucifera HOM05D006755 ORTHO05D008472 6.9e-23 112.5 113 54.9
GSVIVG01023844001 Vitis vinifera HOM05D006755 ORTHO05D008472 3.4e-22 110.2 294 31.3
Actinidia20592 Actinidia chinensis HOM05D006755 ORTHO05D008472 4.4e-22 109.8 58 91.4
ATR0605G371 Amborella trichopoda HOM05D006755 ORTHO05D008472 1.7e-21 107.8 111 55.9
Haze_01948 Corylus avellana HOM05D006755 ORTHO05D008472 2.2e-21 107.5 169 43.8
ClCG02G003160 Citrullus lanatus HOM05D006755 ORTHO05D008472 3.8e-21 106.7 256 63.3
Potri.004G209500 Populus trichocarpa HOM05D006755 ORTHO05D008472 4.9e-21 106.3 364 50.8
SEGI_20822 Sequoiadendron giganteum HOM05D006755 ORTHO05D008472 6.4e-21 105.9 216 69.4
FvH4_2g17180 Fragaria vesca HOM05D006755 ORTHO05D008472 1.4e-20 104.8 330 53.9
Hund00104 Selenicereus undatus HOM05D006755 ORTHO05D001720 2.4e-20 104.0 126 48.4
MBI01_g31986_MAGBIO Magnolia biondii HOM05D006755 ORTHO05D008472 9.3e-20 102.1 230 65.2
FAN15G2937 Fragaria x ananassa HOM05D006755 ORTHO05D008472 1.2e-19 101.7 330 53.3
FAN27G0618 Fragaria x ananassa HOM05D006755 ORTHO05D008472 1.3e-18 98.2 330 53.0
Nn6g31556 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.9e-17 94.4 172 57.0
RcHm_v2.0_Chr6g0281671 Rosa chinensis HOM05D006755 ORTHO05D008472 2.5e-17 94.0 195 39.0
Ah.01g017780 Amaranthus hybridus HOM05D006755 ORTHO05D008472 3.3e-17 93.6 233 63.9
Sed0025141 Sechium edule HOM05D006755 ORTHO05D008472 1.3e-16 91.7 90 56.7
Lj6P318T4 Lonicera japonica HOM05D006755 ORTHO05D008472 1.2e-11 75.1 36 100.0
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 1.6e-11 74.7 75 52.0
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 3.5e-11 73.6 75 52.0
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 6.0e-11 72.8 75 52.0
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 6.7e-10 69.3 90 46.7
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 3.3e-09 67.0 71 49.3
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 3.3e-09 67.0 89 46.1
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.6e-09 66.2 61 50.8
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 4.8e-08 63.2 75 48.0
Nn5g27110 Nelumbo nucifera HOM05D006755 ORTHO05D008472 4.8e-08 63.2 146 75.3
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 4.8e-08 63.2 61 49.2
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 6.2e-08 62.8 75 44.0
Oeu053880.1 Olea europaea HOM05D043847 ORTHO05D008472 8.1e-08 62.4 43 72.1
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 8.1e-08 62.4 98 36.7
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 1.1e-07 62.0 61 47.5
MD05G1145400 Malus domestica HOM05D006755 ORTHO05D008472 1.8e-07 61.2 35 85.7
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 3.1e-07 60.5 83 42.2
Glyma.20G089500 Glycine max HOM05D002804 ORTHO05D003755 3.1e-07 60.5 90 38.9
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 4.0e-07 60.1 72 45.8
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 5.3e-07 59.7 108 35.2
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.3e-07 59.7 108 35.2
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 5.3e-07 59.7 72 43.1
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 6.9e-07 59.3 119 37.0
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 9.0e-07 58.9 75 42.7
Lsat_1_v5_gn_9_84161 Lactuca sativa HOM05D002804 ORTHO05D003755 1.2e-06 58.5 87 41.4
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 1.5e-06 58.2 87 41.4
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 2.0e-06 57.8 48 52.1
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 2.6e-06 57.4 75 42.7
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 3.4e-06 57.0 87 36.8
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 5.8e-06 56.2 94 36.2
Lalb_Chr02g0147321 Lupinus albus HOM05D002804 ORTHO05D003755 1.0e-05 55.5 62 43.5


User provided reference genes

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