Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 1.3e-157 559.7 275 100.0
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 5.9e-123 444.5 233 93.6
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 7.7e-123 444.1 254 87.0
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 3.2e-121 438.7 233 91.8
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 8.3e-109 397.5 259 79.5
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 2.8e-96 355.9 246 70.3
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 2.9e-93 345.9 243 69.1
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 9.2e-92 340.9 229 73.4
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 1.0e-90 337.4 261 63.2
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 1.3e-90 337.0 236 70.3
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 1.1e-89 334.0 238 69.7
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 6.2e-88 328.2 233 66.1
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 1.1e-87 327.4 235 64.7
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 1.4e-87 327.0 247 65.6
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 4.0e-87 325.5 230 66.5
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 2.6e-86 322.8 238 65.5
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 3.4e-86 322.4 235 68.1
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 2.9e-85 319.3 256 63.7
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 2.9e-85 319.3 236 65.3
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 2.4e-84 316.2 240 65.4
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 7.1e-84 314.7 238 66.0
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 7.8e-83 311.2 237 63.7
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 1.3e-82 310.5 243 62.6
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 1.3e-82 310.5 234 65.0
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 1.7e-82 310.1 232 63.8
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 1.7e-82 310.1 242 64.5
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 6.6e-82 308.1 239 64.0
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 6.6e-82 308.1 231 64.9
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 1.1e-81 307.4 235 65.1
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 1.5e-81 307.0 236 66.5
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 1.9e-81 306.6 232 63.4
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 1.9e-81 306.6 238 63.9
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 2.5e-81 306.2 258 61.2
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 2.5e-81 306.2 230 66.5
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 4.3e-81 305.4 255 58.4
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 5.6e-81 305.1 234 63.7
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 7.3e-81 304.7 252 59.5
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 7.3e-81 304.7 234 62.0
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 9.5e-81 304.3 242 63.2
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 1.2e-80 303.9 253 59.3
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 1.6e-80 303.5 232 62.5
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 1.6e-80 303.5 233 63.1
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 1.6e-80 303.5 233 62.2
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 2.1e-80 303.1 233 62.7
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 2.1e-80 303.1 257 60.7
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 2.8e-80 302.8 234 63.7
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 2.8e-80 302.8 234 63.7
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 2.3e-79 299.7 233 60.9
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 3.1e-79 299.3 233 60.9
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 4.0e-79 298.9 229 64.2
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 4.0e-79 298.9 253 60.9
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 4.0e-79 298.9 232 60.8
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 5.2e-79 298.5 232 61.6
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 6.8e-79 298.1 238 60.5
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 2.0e-78 296.6 235 61.7
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 3.4e-78 295.8 249 58.6
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 7.6e-78 294.7 234 62.8
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 9.9e-78 294.3 251 59.8
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 1.7e-77 293.5 256 60.5
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 2.2e-77 293.1 242 60.3
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 2.9e-77 292.7 229 61.6
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 3.7e-77 292.4 220 64.5
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 4.9e-77 292.0 236 61.4
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 8.4e-77 291.2 229 63.8
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 1.1e-76 290.8 242 58.7
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 3.5e-75 285.8 221 62.4
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 6.0e-75 285.0 246 60.6
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 1.0e-74 284.3 237 59.9
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 3.0e-74 282.7 238 60.1
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 9.6e-73 277.7 238 57.1
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 5.2e-71 271.9 249 57.4
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 6.8e-71 271.6 231 58.9
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 8.9e-71 271.2 267 54.3
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 1.2e-70 270.8 244 55.7
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 7.6e-70 268.1 243 57.6
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 1.3e-69 267.3 195 66.7
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 4.9e-69 265.4 239 57.7
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 1.9e-68 263.5 239 59.8
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 9.3e-68 261.2 232 64.2
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 1.9e-65 253.4 372 40.1
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 2.5e-65 253.1 240 56.2
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 5.6e-65 251.9 244 54.5
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 7.3e-65 251.5 208 62.0
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 1.6e-64 250.4 199 61.3
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 1.4e-63 247.3 247 51.4
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 9.0e-63 244.6 236 52.1
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 5.8e-62 241.9 200 61.0
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 8.4e-61 238.0 201 58.7
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 1.7e-58 230.3 187 64.2
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 5.6e-57 225.3 233 51.9
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 1.3e-56 224.2 217 50.7
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 3.6e-56 222.6 264 50.4
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 3.6e-56 222.6 264 50.4
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 3.2e-52 209.5 232 48.3
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 9.3e-52 208.0 164 61.0
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 2.1e-51 206.8 267 45.7
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 1.6e-48 197.2 153 63.4
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 2.0e-46 190.3 120 78.3
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 3.4e-46 189.5 160 58.8
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 4.9e-45 185.7 155 56.1
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 1.9e-44 183.7 154 59.7
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 6.0e-43 178.7 130 65.4
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 1.8e-42 177.2 135 64.4
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 3.3e-41 172.9 185 51.9
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 8.2e-40 168.3 123 64.2
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 8.2e-40 168.3 122 64.8
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 1.4e-39 167.5 121 66.9
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 1.8e-39 167.2 124 63.7
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 6.9e-39 165.2 123 63.4
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 6.9e-39 165.2 123 63.4
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 1.5e-38 164.1 132 59.1
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 4.5e-38 162.5 212 42.5
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 7.2e-36 155.2 115 68.7
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 6.7e-34 148.7 108 63.0
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 7.7e-30 135.2 280 33.9
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 1.0e-29 134.8 135 54.1
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 1.1e-25 121.3 248 35.1
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 2.2e-24 117.1 315 30.5
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 3.1e-23 113.2 93 60.2
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 5.3e-23 112.5 87 60.9
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 6.9e-23 112.1 97 59.8
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 6.9e-23 112.1 102 56.9
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 4.5e-22 109.4 95 61.1
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 7.2e-20 102.1 74 62.2
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 1.6e-19 100.9 85 58.8
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 4.7e-19 99.4 166 38.0
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 1.8e-18 97.4 93 50.5
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 1.5e-17 94.4 59 74.6
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 2.6e-14 83.6 64 54.7
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 6.5e-13 79.0 59 61.0
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 1.1e-09 68.2 70 50.0
SHI14999 Sapria himalayana HOM05D005377 ORTHO05D003034 2.2e-08 63.9 43 67.4
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 9.1e-07 58.5 37 73.0


User provided reference genes

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